Wall clock time and date at job start Mon Mar 30 2020 20:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 H 1.09004 * 109.47294 * 182.73811 * 3 2 1 5 5 C 1.50703 * 109.47423 * 62.73741 * 3 2 1 6 6 H 1.07998 * 120.00060 * 242.82392 * 5 3 2 7 7 C 1.37879 * 119.99588 * 62.82139 * 5 3 2 8 8 N 1.31520 * 119.99570 * 190.85931 * 7 5 3 9 9 Si 1.86797 * 120.00244 * 10.86734 * 7 5 3 10 10 H 1.48494 * 109.47369 * 94.74400 * 9 7 5 11 11 H 1.48503 * 109.47007 * 214.74313 * 9 7 5 12 12 H 1.48502 * 109.47032 * 334.73931 * 9 7 5 13 13 N 1.46901 * 109.47193 * 302.73831 * 3 2 1 14 14 C 1.46898 * 111.00081 * 174.35094 * 13 3 2 15 15 C 1.46897 * 110.99798 * 298.30733 * 13 3 2 16 16 C 1.52998 * 109.47198 * 168.86751 * 15 13 3 17 17 C 1.53006 * 109.47244 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47148 * 179.97438 * 17 16 15 19 19 C 1.52994 * 117.50190 * 243.75155 * 18 17 16 20 20 C 1.52994 * 117.49786 * 175.08566 * 18 17 16 21 21 H 1.08999 * 109.47065 * 184.26578 * 1 2 3 22 22 H 1.08995 * 109.47432 * 304.27514 * 1 2 3 23 23 H 1.09003 * 109.46555 * 64.27074 * 1 2 3 24 24 H 1.09001 * 109.47327 * 239.99392 * 2 1 3 25 25 H 1.09005 * 109.46792 * 119.99641 * 2 1 3 26 26 H 0.96996 * 119.99458 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.47465 * 60.00300 * 14 13 3 28 28 H 1.09003 * 109.46935 * 180.02562 * 14 13 3 29 29 H 1.09003 * 109.46759 * 299.99710 * 14 13 3 30 30 H 1.09006 * 109.46976 * 288.86552 * 15 13 3 31 31 H 1.09005 * 109.47706 * 48.86544 * 15 13 3 32 32 H 1.08996 * 109.47081 * 299.99931 * 16 15 13 33 33 H 1.09001 * 109.47314 * 59.99704 * 16 15 13 34 34 H 1.08996 * 109.47396 * 300.00192 * 17 16 15 35 35 H 1.09001 * 109.46836 * 59.99866 * 17 16 15 36 36 H 1.09010 * 115.54745 * 29.42325 * 18 17 16 37 37 H 1.09000 * 117.50031 * 359.97438 * 19 18 17 38 38 H 1.08995 * 117.50263 * 145.02674 * 19 18 17 39 39 H 1.08999 * 117.50052 * 214.98026 * 20 18 17 40 40 H 1.08999 * 117.50137 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1290 1.4428 -0.0491 5 6 1.5939 2.1331 1.2630 6 1 0.9325 2.9851 1.2078 7 6 2.0302 1.6771 2.4889 8 7 1.4819 2.1343 3.5935 9 14 3.4000 0.4104 2.5809 10 1 4.7014 1.1012 2.7658 11 1 3.1556 -0.5004 3.7280 12 1 3.4317 -0.3766 1.3220 13 7 1.4971 2.1538 -1.1650 14 6 1.8564 3.5777 -1.1268 15 6 1.9452 1.5312 -2.4178 16 6 1.1513 2.1132 -3.5890 17 6 1.6184 1.4651 -4.8939 18 6 0.8241 2.0467 -6.0651 19 6 -0.0753 1.0916 -6.8523 20 6 1.2233 1.6095 -7.4758 21 1 -0.3633 -1.0248 0.0764 22 1 -0.3634 0.5787 0.8491 23 1 -0.3632 0.4462 -0.9258 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7891 1.8138 4.4559 27 1 2.9417 3.6788 -1.1302 28 1 1.4415 4.0806 -2.0004 29 1 1.4521 4.0302 -0.2213 30 1 3.0068 1.7310 -2.5634 31 1 1.7817 0.4546 -2.3673 32 1 0.0897 1.9134 -3.4433 33 1 1.3147 3.1897 -3.6395 34 1 2.6799 1.6652 -5.0394 35 1 1.4553 0.3885 -4.8437 36 1 0.4776 3.0721 -5.9351 37 1 -0.1008 0.0488 -6.5362 38 1 -1.0132 1.4886 -7.2407 39 1 1.1391 2.3469 -8.2741 40 1 2.0516 0.9072 -7.5696 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400769607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:48 Heat of formation + Delta-G solvation = 19.747330 kcal Electronic energy + Delta-G solvation = -16082.382284 eV Core-core repulsion = 13704.813959 eV Total energy + Delta-G solvation = -2377.568325 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.11763 -37.24773 -33.69988 -31.84845 -31.22965 -27.31475 -26.26947 -24.32685 -22.49808 -22.40021 -20.88254 -20.42521 -18.86789 -16.44216 -15.74613 -15.49178 -14.78136 -14.30926 -14.16863 -13.84122 -13.22311 -12.83369 -12.57755 -12.23200 -11.95943 -11.73450 -11.66355 -11.47407 -11.09262 -10.98349 -10.92092 -10.64896 -10.48403 -10.29357 -10.06221 -9.97785 -9.91315 -9.72069 -9.09310 -8.86448 -8.44087 -7.24775 -6.05151 -3.99882 3.28235 3.37771 3.40298 3.72110 4.44080 4.52421 4.82598 4.86305 5.01471 5.25261 5.28130 5.38138 5.51205 5.60006 5.73974 5.84938 5.93929 6.00337 6.04247 6.06768 6.13088 6.23949 6.29370 6.33230 6.39743 6.48869 6.57311 6.63257 6.84867 6.87215 7.03976 7.15458 7.24881 7.54675 7.71431 8.03060 8.17173 8.71015 9.03696 9.59692 11.07592 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046143 B = 0.005716 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.662370 B = 4897.167422 C = 5001.249586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.188 3.812 4 H -0.011 1.011 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.856 3.144 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.525 5.525 14 C 0.036 3.964 15 C 0.048 3.952 16 C -0.110 4.110 17 C -0.088 4.088 18 C -0.146 4.146 19 C -0.182 4.182 20 C -0.187 4.187 21 H 0.019 0.981 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.027 0.973 25 H 0.057 0.943 26 H 0.262 0.738 27 H 0.009 0.991 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.018 0.982 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -2.051 -16.754 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 C 0.081 3.919 4 H 0.007 0.993 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.684 3.316 10 H -0.211 1.211 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.248 5.248 14 C -0.112 4.112 15 C -0.081 4.081 16 C -0.148 4.148 17 C -0.126 4.126 18 C -0.165 4.165 19 C -0.219 4.219 20 C -0.224 4.224 21 H 0.039 0.961 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.424 -2.102 -16.513 16.652 hybrid contribution 1.712 -0.626 0.186 1.832 sum 1.287 -2.728 -16.327 16.603 Atomic orbital electron populations 1.21476 0.95683 0.98212 1.02823 1.22041 0.97132 0.97830 0.98812 1.19630 0.91757 0.91077 0.89471 0.99308 1.20911 1.29598 1.15562 0.87909 0.90064 1.24863 0.96200 0.96048 0.95662 1.69934 1.41047 1.44803 0.97676 0.87417 0.83218 0.82497 0.78472 1.21074 1.21321 1.17168 1.61921 1.59560 1.02183 1.01171 1.22266 0.97287 0.89913 1.01741 1.22162 0.95706 0.99571 0.90619 1.21558 1.00892 0.99800 0.92531 1.21173 0.98770 0.99688 0.93003 1.22375 1.02559 0.99432 0.92089 1.23028 0.94494 0.99640 1.04722 1.22965 0.98943 1.03975 0.96508 0.96147 0.91180 0.93162 0.95419 0.92458 0.92791 0.97200 0.93520 0.90141 0.96384 0.91116 0.91253 0.92201 0.92012 0.92003 0.87901 0.88853 0.89126 0.89172 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.52 37.16 0.35 -2.27 16 2 C -0.12 -2.66 4.54 -26.73 -0.12 -2.78 16 3 C 0.19 4.45 1.31 -68.86 -0.09 4.36 16 4 H -0.01 -0.26 7.07 -51.93 -0.37 -0.63 16 5 C -0.50 -13.74 7.15 -34.44 -0.25 -13.99 16 6 H 0.08 2.43 6.64 -52.49 -0.35 2.08 16 7 C 0.07 2.10 5.39 -17.82 -0.10 2.00 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 9 Si 0.86 21.10 25.75 -169.99 -4.38 16.72 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.25 -5.73 5.07 56.52 0.29 -5.44 16 13 N -0.52 -10.83 3.82 -236.28 -0.90 -11.73 16 14 C 0.04 0.71 9.03 60.06 0.54 1.25 16 15 C 0.05 0.82 4.80 -3.83 -0.02 0.81 16 16 C -0.11 -1.56 5.13 -26.73 -0.14 -1.69 16 17 C -0.09 -1.05 5.50 -26.73 -0.15 -1.19 16 18 C -0.15 -1.55 5.73 -90.63 -0.52 -2.07 16 19 C -0.18 -1.76 10.18 -26.69 -0.27 -2.03 16 20 C -0.19 -1.74 10.25 -26.69 -0.27 -2.01 16 21 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.07 1.67 7.17 -51.93 -0.37 1.30 16 23 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 24 H 0.03 0.55 6.36 -51.93 -0.33 0.22 16 25 H 0.06 1.33 4.19 -51.93 -0.22 1.12 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.05 0.78 6.35 -51.93 -0.33 0.45 16 29 H 0.08 1.74 6.19 -51.93 -0.32 1.42 16 30 H 0.02 0.31 8.11 -51.93 -0.42 -0.11 16 31 H 0.07 1.22 5.91 -51.93 -0.31 0.92 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.84 6.51 -51.93 -0.34 0.50 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.73 7.87 -51.93 -0.41 0.32 16 36 H 0.10 1.09 8.08 -51.92 -0.42 0.67 16 37 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -28.74 302.78 -8.17 -36.92 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.20 Total: -0.58 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -1.03 Total: -19.63 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.13 Total: -37.99 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.38 Total: 16.72 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.74 -8.17 -36.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400769607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.664 kcal (2) G-P(sol) polarization free energy of solvation -28.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds