Wall clock time and date at job start Mon Mar 30 2020 20:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47219 * 2 1 4 4 H 1.09003 * 109.47288 * 54.79967 * 3 2 1 5 5 C 1.50695 * 109.47267 * 174.80494 * 3 2 1 6 6 H 1.08001 * 119.99932 * 120.00206 * 5 3 2 7 7 C 1.37878 * 119.99864 * 299.99884 * 5 3 2 8 8 N 1.31518 * 120.00010 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00011 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46787 * 90.00331 * 9 7 5 11 11 H 1.48498 * 109.47332 * 209.99928 * 9 7 5 12 12 H 1.48501 * 109.47020 * 330.00276 * 9 7 5 13 13 N 1.46903 * 109.47076 * 294.80580 * 3 2 1 14 14 C 1.46899 * 111.00050 * 153.74508 * 13 3 2 15 15 C 1.53002 * 109.47254 * 175.86863 * 14 13 3 16 16 H 1.09009 * 109.46921 * 54.99657 * 15 14 13 17 17 C 1.53006 * 109.47217 * 295.00036 * 15 14 13 18 18 C 1.52993 * 109.47389 * 174.99568 * 15 14 13 19 19 C 1.53775 * 113.61800 * 277.49805 * 18 15 14 20 20 C 1.53783 * 87.08453 * 220.01574 * 19 18 15 21 21 C 1.53785 * 113.61507 * 179.97438 * 18 15 14 22 22 H 1.09002 * 109.46711 * 306.18660 * 1 2 3 23 23 H 1.08991 * 109.47522 * 66.19151 * 1 2 3 24 24 H 1.09002 * 109.46778 * 186.19783 * 1 2 3 25 25 H 1.09001 * 109.47218 * 240.00154 * 2 1 3 26 26 H 1.08999 * 109.47567 * 120.00231 * 2 1 3 27 27 H 0.97000 * 120.00098 * 180.02562 * 8 7 5 28 28 H 1.00900 * 111.00248 * 29.78353 * 13 3 2 29 29 H 1.08994 * 109.47382 * 55.87021 * 14 13 3 30 30 H 1.09000 * 109.46816 * 295.86463 * 14 13 3 31 31 H 1.08999 * 109.46634 * 300.00124 * 17 15 14 32 32 H 1.08998 * 109.46913 * 59.99695 * 17 15 14 33 33 H 1.08994 * 109.47011 * 179.97438 * 17 15 14 34 34 H 1.09002 * 112.85119 * 48.80697 * 18 15 14 35 35 H 1.08995 * 113.61483 * 334.56541 * 19 18 15 36 36 H 1.09004 * 113.61674 * 105.47145 * 19 18 15 37 37 H 1.08996 * 113.61581 * 270.88641 * 20 19 18 38 38 H 1.09000 * 113.68991 * 139.98924 * 20 19 18 39 39 H 1.08998 * 113.61478 * 254.53074 * 21 18 15 40 40 H 1.08992 * 113.61383 * 25.35308 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6027 1.9825 0.8398 5 6 3.5415 1.4444 0.1286 6 1 4.1492 1.8881 -0.6460 7 6 4.1393 0.8798 1.2354 8 7 5.4496 0.8819 1.3479 9 14 3.0880 0.1130 2.5756 10 1 2.8672 -1.3234 2.2705 11 1 3.7816 0.2404 3.8825 12 1 1.7796 0.8125 2.6393 13 7 1.6554 2.0978 -1.2572 14 6 1.5471 3.5522 -1.0811 15 6 1.2470 4.2084 -2.4303 16 1 0.3555 3.7555 -2.8643 17 6 2.4343 4.0021 -3.3731 18 6 1.0109 5.7063 -2.2276 19 6 -0.4194 6.0494 -1.7790 20 6 -0.3425 7.2584 -2.7262 21 6 0.7002 6.4628 -3.5300 22 1 -0.3633 0.6068 0.8295 23 1 -0.3634 0.4148 -0.9401 24 1 -0.3633 -1.0217 0.1110 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8702 0.4844 2.1263 28 1 0.7956 1.7121 -1.6178 29 1 2.4864 3.9416 -0.6887 30 1 0.7411 3.7744 -0.3818 31 1 3.3257 4.4550 -2.9391 32 1 2.6025 2.9349 -3.5175 33 1 2.2203 4.4692 -4.3344 34 1 1.7848 6.1788 -1.6227 35 1 -1.1603 5.3076 -2.0771 36 1 -0.4931 6.3234 -0.7265 37 1 0.0605 8.1558 -2.2569 38 1 -1.2663 7.4453 -3.2737 39 1 1.5301 7.0703 -3.8907 40 1 0.2669 5.8337 -4.3075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692906708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:39 Heat of formation + Delta-G solvation = 1.663634 kcal Electronic energy + Delta-G solvation = -16192.360471 eV Core-core repulsion = 13814.007977 eV Total energy + Delta-G solvation = -2378.352493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.14501 -36.66466 -33.76150 -31.96273 -30.37145 -27.24713 -26.10962 -25.03719 -23.86703 -22.33719 -20.08685 -19.84413 -19.15386 -16.71431 -15.46872 -15.28923 -14.88445 -14.32760 -14.07577 -13.78722 -12.90515 -12.78729 -12.46773 -12.41544 -12.19769 -12.07867 -11.73727 -11.45179 -11.37617 -11.13187 -10.81663 -10.63187 -10.45492 -10.25965 -10.19660 -10.06030 -9.82545 -9.67179 -9.30877 -9.13843 -8.48140 -7.26487 -5.99944 -3.96078 3.27952 3.38607 3.40466 4.44195 4.67343 4.73032 4.80134 4.93103 5.21154 5.30411 5.42586 5.64659 5.72392 5.76419 5.79746 5.82636 5.84346 5.90928 5.92128 5.98843 6.04934 6.08745 6.23470 6.38784 6.47693 6.49196 6.52435 6.57501 6.65831 6.73679 6.81650 6.89680 6.95750 7.23525 7.77604 8.05540 8.35380 8.82633 9.13144 9.63752 11.13637 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033310 B = 0.006630 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.392600 B = 4221.928414 C = 4490.872821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.189 3.811 4 H -0.001 1.001 5 C -0.492 4.492 6 H 0.081 0.919 7 C 0.065 3.935 8 N -0.903 5.903 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.673 5.673 14 C 0.073 3.927 15 C -0.075 4.075 16 H 0.059 0.941 17 C -0.133 4.133 18 C -0.103 4.103 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.134 4.134 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.262 0.738 28 H 0.316 0.684 29 H 0.076 0.924 30 H 0.012 0.988 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.845 7.774 -6.782 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.081 3.919 4 H 0.016 0.984 5 C -0.530 4.530 6 H 0.099 0.901 7 C -0.136 4.136 8 N -0.542 5.542 9 Si 0.713 3.287 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.304 5.304 14 C -0.057 4.057 15 C -0.094 4.094 16 H 0.078 0.922 17 C -0.190 4.190 18 C -0.122 4.122 19 C -0.175 4.175 20 C -0.182 4.182 21 C -0.171 4.171 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.036 7.749 -6.896 15.146 hybrid contribution -1.280 -0.480 1.427 1.976 sum -12.315 7.269 -5.469 15.310 Atomic orbital electron populations 1.21907 0.98254 1.00472 1.00720 1.22121 0.92902 1.00577 1.01729 1.19612 0.96800 0.89139 0.86399 0.98369 1.21054 0.89135 1.36979 1.05881 0.90124 1.24968 0.94739 0.96110 0.97768 1.69891 1.08661 1.46027 1.29612 0.86949 0.80681 0.79767 0.81336 1.20646 1.22567 1.19390 1.60478 1.36179 1.02439 1.31259 1.21873 1.00155 0.89363 0.94307 1.21108 0.98538 0.93113 0.96660 0.92208 1.21644 0.97420 1.02767 0.97205 1.22575 0.96747 0.95821 0.97086 1.22950 0.97578 0.97793 0.99218 1.22824 0.99307 0.97379 0.98664 1.22902 0.98689 0.98609 0.96934 0.93665 0.93122 0.93685 0.91353 0.92929 0.92818 0.86726 0.90598 0.96986 0.93098 0.91247 0.94298 0.89345 0.90418 0.91869 0.90552 0.92003 0.91870 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.63 37.16 0.36 -2.34 16 2 C -0.14 -2.93 5.01 -26.73 -0.13 -3.06 16 3 C 0.19 4.47 1.62 -68.87 -0.11 4.36 16 4 H 0.00 -0.03 6.89 -51.93 -0.36 -0.39 16 5 C -0.49 -13.99 9.19 -34.44 -0.32 -14.30 16 6 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 7 C 0.06 1.89 5.45 -17.82 -0.10 1.80 16 8 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 9 Si 0.88 22.20 24.41 -169.99 -4.15 18.05 16 10 H -0.28 -6.84 6.83 56.52 0.39 -6.46 16 11 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 12 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 13 N -0.67 -13.63 5.73 -107.96 -0.62 -14.25 16 14 C 0.07 1.33 4.83 -3.82 -0.02 1.31 16 15 C -0.08 -1.11 2.31 -90.62 -0.21 -1.32 16 16 H 0.06 0.84 7.94 -51.92 -0.41 0.43 16 17 C -0.13 -2.03 8.88 37.16 0.33 -1.70 16 18 C -0.10 -1.32 3.13 -89.81 -0.28 -1.60 16 19 C -0.14 -1.59 7.63 -25.92 -0.20 -1.78 16 20 C -0.14 -1.46 8.08 -25.89 -0.21 -1.67 16 21 C -0.13 -1.46 6.68 -25.89 -0.17 -1.63 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.77 6.65 -51.93 -0.35 0.43 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.05 1.22 3.22 -51.93 -0.17 1.06 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.32 5.69 6.61 -39.29 -0.26 5.43 16 29 H 0.08 1.59 7.98 -51.93 -0.41 1.17 16 30 H 0.01 0.22 8.13 -51.93 -0.42 -0.21 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.18 7.75 -51.93 -0.40 0.78 16 33 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 0.88 7.96 -51.93 -0.41 0.46 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -29.67 305.34 -7.87 -37.54 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.41 Total: 3.22 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.06 Total: -21.94 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.15 Total: -41.47 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.15 Total: 18.05 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.67 -7.87 -37.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692906708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.200 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds