Wall clock time and date at job start Mon Mar 30 2020 20:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47219 * 2 1 4 4 H 1.09003 * 109.47288 * 54.79967 * 3 2 1 5 5 C 1.50695 * 109.47267 * 174.80494 * 3 2 1 6 6 H 1.08001 * 119.99932 * 120.00206 * 5 3 2 7 7 C 1.37878 * 119.99864 * 299.99884 * 5 3 2 8 8 N 1.31518 * 120.00010 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00011 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46787 * 90.00331 * 9 7 5 11 11 H 1.48498 * 109.47332 * 209.99928 * 9 7 5 12 12 H 1.48501 * 109.47020 * 330.00276 * 9 7 5 13 13 N 1.46903 * 109.47076 * 294.80580 * 3 2 1 14 14 C 1.46899 * 111.00050 * 153.74508 * 13 3 2 15 15 C 1.53002 * 109.47254 * 175.86863 * 14 13 3 16 16 H 1.09009 * 109.46921 * 54.99657 * 15 14 13 17 17 C 1.53006 * 109.47217 * 295.00036 * 15 14 13 18 18 C 1.52993 * 109.47389 * 174.99568 * 15 14 13 19 19 C 1.53775 * 113.61800 * 277.49805 * 18 15 14 20 20 C 1.53783 * 87.08453 * 220.01574 * 19 18 15 21 21 C 1.53785 * 113.61507 * 179.97438 * 18 15 14 22 22 H 1.09002 * 109.46711 * 306.18660 * 1 2 3 23 23 H 1.08991 * 109.47522 * 66.19151 * 1 2 3 24 24 H 1.09002 * 109.46778 * 186.19783 * 1 2 3 25 25 H 1.09001 * 109.47218 * 240.00154 * 2 1 3 26 26 H 1.08999 * 109.47567 * 120.00231 * 2 1 3 27 27 H 0.97000 * 120.00098 * 180.02562 * 8 7 5 28 28 H 1.00900 * 111.00248 * 29.78353 * 13 3 2 29 29 H 1.08994 * 109.47382 * 55.87021 * 14 13 3 30 30 H 1.09000 * 109.46816 * 295.86463 * 14 13 3 31 31 H 1.08999 * 109.46634 * 300.00124 * 17 15 14 32 32 H 1.08998 * 109.46913 * 59.99695 * 17 15 14 33 33 H 1.08994 * 109.47011 * 179.97438 * 17 15 14 34 34 H 1.09002 * 112.85119 * 48.80697 * 18 15 14 35 35 H 1.08995 * 113.61483 * 334.56541 * 19 18 15 36 36 H 1.09004 * 113.61674 * 105.47145 * 19 18 15 37 37 H 1.08996 * 113.61581 * 270.88641 * 20 19 18 38 38 H 1.09000 * 113.68991 * 139.98924 * 20 19 18 39 39 H 1.08998 * 113.61478 * 254.53074 * 21 18 15 40 40 H 1.08992 * 113.61383 * 25.35308 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6027 1.9825 0.8398 5 6 3.5415 1.4444 0.1286 6 1 4.1492 1.8881 -0.6460 7 6 4.1393 0.8798 1.2354 8 7 5.4496 0.8819 1.3479 9 14 3.0880 0.1130 2.5756 10 1 2.8672 -1.3234 2.2705 11 1 3.7816 0.2404 3.8825 12 1 1.7796 0.8125 2.6393 13 7 1.6554 2.0978 -1.2572 14 6 1.5471 3.5522 -1.0811 15 6 1.2470 4.2084 -2.4303 16 1 0.3555 3.7555 -2.8643 17 6 2.4343 4.0021 -3.3731 18 6 1.0109 5.7063 -2.2276 19 6 -0.4194 6.0494 -1.7790 20 6 -0.3425 7.2584 -2.7262 21 6 0.7002 6.4628 -3.5300 22 1 -0.3633 0.6068 0.8295 23 1 -0.3634 0.4148 -0.9401 24 1 -0.3633 -1.0217 0.1110 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8702 0.4844 2.1263 28 1 0.7956 1.7121 -1.6178 29 1 2.4864 3.9416 -0.6887 30 1 0.7411 3.7744 -0.3818 31 1 3.3257 4.4550 -2.9391 32 1 2.6025 2.9349 -3.5175 33 1 2.2203 4.4692 -4.3344 34 1 1.7848 6.1788 -1.6227 35 1 -1.1603 5.3076 -2.0771 36 1 -0.4931 6.3234 -0.7265 37 1 0.0605 8.1558 -2.2569 38 1 -1.2663 7.4453 -3.2737 39 1 1.5301 7.0703 -3.8907 40 1 0.2669 5.8337 -4.3075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692906708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:39 Heat of formation + Delta-G solvation = -16.986755 kcal Electronic energy + Delta-G solvation = -16193.169212 eV Core-core repulsion = 13814.007977 eV Total energy + Delta-G solvation = -2379.161235 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18122 -38.32209 -35.24975 -34.05476 -31.82337 -29.12188 -27.28423 -25.99766 -25.33195 -24.00196 -21.75989 -21.21283 -20.18400 -18.85158 -17.04952 -16.52338 -16.27496 -15.93782 -15.54844 -15.23306 -14.82839 -14.16214 -13.90960 -13.67422 -13.52032 -13.28735 -13.16903 -12.94195 -12.85093 -12.46876 -12.40050 -12.21218 -12.04084 -11.64703 -11.59945 -11.31878 -11.25303 -11.21543 -10.89366 -10.79151 -10.59320 -8.97295 -8.26994 -6.28119 1.27395 1.32846 1.43018 2.31291 3.05755 3.45931 3.78417 3.82042 3.96808 4.06569 4.17876 4.28642 4.34505 4.42581 4.52811 4.55361 4.71421 4.82729 4.91778 4.93154 4.94484 4.96452 5.04869 5.08737 5.11496 5.13293 5.15780 5.21614 5.24017 5.37559 5.46166 5.54116 5.58705 5.73304 5.74232 6.10512 6.54800 6.78659 7.01454 7.36384 8.90622 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033310 B = 0.006630 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.392600 B = 4221.928414 C = 4490.872821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.194 3.806 4 H -0.010 1.010 5 C -0.497 4.497 6 H 0.030 0.970 7 C 0.005 3.995 8 N -0.953 5.953 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.300 1.300 12 H -0.250 1.250 13 N -0.679 5.679 14 C 0.077 3.923 15 C -0.064 4.064 16 H 0.077 0.923 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.128 4.128 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.334 0.666 29 H 0.036 0.964 30 H 0.020 0.980 31 H 0.029 0.971 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 7.773 -7.217 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.085 3.915 4 H 0.007 0.993 5 C -0.535 4.535 6 H 0.049 0.951 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.228 1.228 12 H -0.175 1.175 13 N -0.311 5.311 14 C -0.053 4.053 15 C -0.083 4.083 16 H 0.095 0.905 17 C -0.186 4.186 18 C -0.131 4.131 19 C -0.175 4.175 20 C -0.173 4.173 21 C -0.166 4.166 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.154 0.846 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.344 7.755 -7.358 17.889 hybrid contribution -0.172 -0.419 1.474 1.542 sum -14.516 7.337 -5.883 17.296 Atomic orbital electron populations 1.21833 0.94284 1.02389 1.02023 1.22006 0.96417 0.98106 1.00811 1.19394 0.93460 0.91120 0.87522 0.99261 1.21320 0.91778 1.35917 1.04521 0.95124 1.25837 0.95916 0.96843 1.00492 1.70059 1.10856 1.47771 1.30755 0.85842 0.79343 0.79599 0.77539 1.19003 1.22783 1.17457 1.60300 1.37544 1.03500 1.29728 1.21844 0.98405 0.88298 0.96737 1.21036 0.98656 0.94427 0.94167 0.90462 1.21594 0.97047 1.01312 0.98666 1.22582 0.97493 0.94265 0.98806 1.22975 0.96367 0.98710 0.99455 1.22788 0.99685 0.96841 0.97947 1.22897 0.99131 0.98460 0.96092 0.93458 0.91021 0.91248 0.91827 0.94388 0.92734 0.84643 0.94486 0.96161 0.95142 0.93407 0.91578 0.90818 0.89691 0.92247 0.90144 0.90393 0.91560 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.63 71.98 0.69 -3.84 16 2 C -0.14 -5.60 5.01 30.59 0.15 -5.45 16 3 C 0.19 9.17 1.62 44.17 0.07 9.24 16 4 H -0.01 -0.49 6.89 -2.39 -0.02 -0.51 16 5 C -0.50 -29.35 9.19 25.60 0.24 -29.12 16 6 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 7 C 0.01 0.31 5.45 84.65 0.46 0.78 16 8 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 9 Si 0.95 46.06 24.41 68.60 1.67 47.73 16 10 H -0.26 -12.09 6.83 99.48 0.68 -11.41 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.25 -11.30 6.53 99.48 0.65 -10.65 16 13 N -0.68 -27.29 5.73 -495.46 -2.84 -30.13 16 14 C 0.08 2.82 4.83 86.30 0.42 3.23 16 15 C -0.06 -1.82 2.31 -10.79 -0.02 -1.84 16 16 H 0.08 1.96 7.94 -2.38 -0.02 1.95 16 17 C -0.13 -3.92 8.88 71.98 0.64 -3.28 16 18 C -0.11 -2.73 3.13 -10.27 -0.03 -2.76 16 19 C -0.14 -2.84 7.63 31.12 0.24 -2.60 16 20 C -0.14 -2.34 8.08 31.14 0.25 -2.08 16 21 C -0.13 -2.47 6.68 31.14 0.21 -2.26 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 1.88 6.65 -2.39 -0.02 1.87 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.04 1.68 3.22 -2.39 -0.01 1.67 16 27 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 28 H 0.33 11.33 6.61 -89.69 -0.59 10.73 16 29 H 0.04 1.63 7.98 -2.39 -0.02 1.61 16 30 H 0.02 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.64 7.75 -2.39 -0.02 1.62 16 33 H 0.07 1.63 7.45 -2.39 -0.02 1.61 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 1.64 7.96 -2.39 -0.02 1.62 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 Total: -1.00 -66.86 305.34 2.75 -64.11 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.30 Total: 19.42 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 3.31 Total: -39.99 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -2.54 Total: -91.27 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Total: -66.86 2.75 -64.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692906708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.123 kcal (2) G-P(sol) polarization free energy of solvation -66.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds