Wall clock time and date at job start Mon Mar 30 2020 20:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 115.55847 * 2 1 4 4 C 1.52998 * 117.49865 * 214.31150 * 2 1 3 5 5 C 1.52996 * 117.49915 * 145.68689 * 2 1 3 6 6 C 1.53004 * 117.51942 * 0.02562 * 5 2 1 7 7 C 1.52999 * 117.50268 * 214.97982 * 5 2 1 8 8 N 1.46890 * 109.47676 * 179.97438 * 7 5 2 9 9 C 1.46901 * 111.00688 * 179.97438 * 8 7 5 10 10 C 1.52992 * 109.47859 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99711 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46794 * 90.00022 * 17 15 13 19 19 H 1.48502 * 109.47140 * 210.00005 * 17 15 13 20 20 H 1.48501 * 109.46982 * 330.00118 * 17 15 13 21 21 H 1.09005 * 109.47153 * 274.31242 * 1 2 3 22 22 H 1.08995 * 109.47447 * 34.31241 * 1 2 3 23 23 H 1.09002 * 109.47005 * 154.31331 * 1 2 3 24 24 H 1.08993 * 117.49983 * 145.02267 * 4 2 1 25 25 H 1.09001 * 117.49772 * 359.97438 * 4 2 1 26 26 H 1.08996 * 109.47442 * 299.88552 * 6 5 2 27 27 H 1.09000 * 109.46897 * 59.88309 * 6 5 2 28 28 H 1.09003 * 109.47253 * 179.88126 * 6 5 2 29 29 H 1.09005 * 109.47077 * 59.98394 * 7 5 2 30 30 H 1.09002 * 109.46769 * 299.99105 * 7 5 2 31 31 H 1.00909 * 111.00262 * 56.04820 * 8 7 5 32 32 H 1.09002 * 109.46980 * 59.99769 * 9 8 7 33 33 H 1.09001 * 109.46628 * 300.00190 * 9 8 7 34 34 H 1.09002 * 109.47103 * 59.99734 * 10 9 8 35 35 H 1.08998 * 109.46862 * 300.00546 * 10 9 8 36 36 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 37 37 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 40 40 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1209 0.7650 6 6 1.3593 -2.1567 1.4712 7 6 3.5490 -0.7759 1.4715 8 7 4.0712 -1.9718 2.1459 9 6 5.3342 -1.6778 2.8362 10 6 5.8463 -2.9446 3.5245 11 6 7.1620 -2.6385 4.2428 12 6 7.6743 -3.9055 4.9306 13 6 8.9700 -3.6037 5.6387 14 1 9.3865 -2.6080 5.6015 15 6 9.6235 -4.5989 6.3340 16 7 10.7545 -4.3357 6.9515 17 14 8.9027 -6.3210 6.3990 18 1 9.4227 -7.1186 5.2595 19 1 9.2900 -6.9719 7.6764 20 1 7.4223 -6.2415 6.3129 21 1 -0.3634 0.0773 1.0248 22 1 -0.3634 0.8488 -0.5793 23 1 -0.3633 -0.9261 -0.4455 24 1 3.1715 -0.8752 -1.2682 25 1 1.6112 -1.8587 -1.2679 26 1 0.7311 -1.6582 2.2094 27 1 0.7289 -2.6595 0.7378 28 1 1.9930 -2.8904 1.9695 29 1 3.3702 0.0075 2.2081 30 1 4.2753 -0.4259 0.7379 31 1 4.1846 -2.7340 1.4944 32 1 5.1682 -0.9004 3.5820 33 1 6.0728 -1.3346 2.1117 34 1 6.0123 -3.7217 2.7784 35 1 5.1078 -3.2883 4.2488 36 1 6.9963 -1.8612 4.9889 37 1 7.9002 -2.2950 3.5181 38 1 6.9362 -4.2493 5.6553 39 1 7.8400 -4.6824 4.1843 40 1 11.2141 -5.0358 7.4410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704271663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:51:18 Heat of formation + Delta-G solvation = -7.831512 kcal Electronic energy + Delta-G solvation = -15031.595829 eV Core-core repulsion = 12652.831595 eV Total energy + Delta-G solvation = -2378.764233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14223 -36.35722 -34.05135 -32.13551 -29.98948 -28.44214 -28.06284 -25.65632 -23.58010 -21.30946 -21.15035 -19.99131 -18.74454 -16.65453 -16.26548 -15.48061 -14.89539 -14.39655 -14.21400 -13.83694 -13.61670 -13.49319 -12.85744 -12.60736 -12.38958 -12.20899 -12.10793 -11.75943 -11.74436 -11.55785 -11.21765 -11.05517 -10.73451 -10.54185 -10.07114 -9.84439 -9.70477 -9.63919 -9.42200 -9.11579 -8.49822 -8.39711 -6.00462 -3.97934 3.33904 3.41017 3.45376 3.46040 4.07239 4.49254 4.50631 4.61118 4.71945 4.93490 5.05361 5.28881 5.33940 5.34734 5.45228 5.48881 5.55539 5.57673 5.58811 5.74028 5.76140 5.84671 5.90717 5.99192 6.06075 6.07828 6.15466 6.33026 6.41166 6.70047 6.80147 6.93398 7.12289 7.37303 7.40067 7.51163 7.84989 8.59022 9.04923 9.62629 11.13214 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.066182 B = 0.003562 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.971526 B = 7859.743516 C = 8091.403519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.150 4.150 3 H 0.100 0.900 4 C -0.177 4.177 5 C -0.118 4.118 6 C -0.109 4.109 7 C 0.095 3.905 8 N -0.686 5.686 9 C 0.058 3.942 10 C -0.118 4.118 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.520 4.520 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.265 1.265 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.340 0.660 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.015 0.985 39 H 0.010 0.990 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.568 6.519 -14.474 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.169 4.169 3 H 0.119 0.881 4 C -0.214 4.214 5 C -0.119 4.119 6 C -0.166 4.166 7 C -0.034 4.034 8 N -0.317 5.317 9 C -0.070 4.070 10 C -0.156 4.156 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.558 4.558 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.545 5.545 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.189 1.189 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.028 0.972 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.811 6.535 -13.791 25.007 hybrid contribution 0.494 -0.766 -0.724 1.164 sum -19.316 5.768 -14.515 24.841 Atomic orbital electron populations 1.21313 0.92859 1.01642 1.01824 1.22411 0.95304 0.94384 1.04822 0.88145 1.23323 1.02387 1.01571 0.94077 1.21634 0.97627 1.00077 0.92545 1.21232 0.98287 0.97680 0.99433 1.21424 0.92676 0.93207 0.96100 1.60526 1.29858 1.07754 1.33546 1.22058 0.88595 0.99155 0.97208 1.21663 0.98405 0.95977 0.99529 1.21416 0.94030 0.99955 0.98544 1.19570 0.96671 0.93520 0.95378 1.21201 1.05200 0.98345 1.31022 0.91148 1.25057 0.94675 0.98937 0.95013 1.69924 1.16574 1.33621 1.34429 0.86752 0.80252 0.84777 0.77361 1.20370 1.21451 1.18932 0.92126 0.92458 0.92591 0.89188 0.88892 0.92619 0.93444 0.90132 0.90825 0.95360 0.84279 0.91156 0.95523 0.92786 0.91637 0.92819 0.93112 0.96635 0.97219 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.22 37.16 0.34 -0.52 16 2 C -0.15 -1.26 6.13 -90.62 -0.56 -1.81 16 3 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.18 -1.50 9.47 -26.73 -0.25 -1.75 16 5 C -0.12 -1.11 2.51 -154.51 -0.39 -1.50 16 6 C -0.11 -1.03 8.76 37.16 0.33 -0.71 16 7 C 0.10 1.02 5.82 -3.83 -0.02 0.99 16 8 N -0.69 -8.26 5.02 -113.79 -0.57 -8.83 16 9 C 0.06 0.80 5.68 -3.83 -0.02 0.78 16 10 C -0.12 -1.91 5.47 -26.74 -0.15 -2.06 16 11 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 13 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 14 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 17 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 21 H 0.06 0.44 8.03 -51.93 -0.42 0.02 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.39 7.77 -51.93 -0.40 -0.01 16 24 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 25 H 0.09 0.74 7.96 -51.93 -0.41 0.32 16 26 H 0.05 0.53 8.03 -51.93 -0.42 0.11 16 27 H 0.05 0.40 7.77 -51.93 -0.40 0.00 16 28 H 0.08 0.85 6.69 -51.93 -0.35 0.50 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.30 7.90 -51.93 -0.41 -0.11 16 31 H 0.34 3.88 8.61 -39.29 -0.34 3.54 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -30.44 319.73 -8.77 -39.21 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.73 Total: -2.03 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -1.40 Total: -22.96 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.20 Total: -36.60 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.44 -8.77 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704271663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.378 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds