Wall clock time and date at job start Mon Mar 30 2020 20:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46634 * 2 1 4 4 O 1.42900 * 109.46755 * 240.00728 * 2 1 3 5 5 C 1.50695 * 109.47205 * 120.00381 * 2 1 3 6 6 C 1.38119 * 120.01829 * 95.00224 * 5 2 1 7 7 C 1.38489 * 120.03788 * 180.29788 * 6 5 2 8 8 F 1.35100 * 119.95307 * 179.69965 * 7 6 5 9 9 C 1.38531 * 120.08739 * 359.44661 * 7 6 5 10 10 C 1.38059 * 120.04187 * 0.54774 * 9 7 6 11 11 C 1.38848 * 120.02529 * 275.02079 * 5 2 1 12 12 O 1.35779 * 120.03877 * 359.95919 * 11 5 2 13 13 C 1.34828 * 116.99684 * 174.42344 * 12 11 5 14 14 H 1.07994 * 120.00102 * 5.06267 * 13 12 11 15 15 C 1.38642 * 119.99887 * 185.06497 * 13 12 11 16 16 N 1.31565 * 120.00166 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99899 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47334 * 60.00084 * 17 15 13 19 19 H 1.48501 * 109.46974 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47199 * 299.99833 * 17 15 13 21 21 H 1.09003 * 109.46634 * 299.99278 * 1 2 3 22 22 H 1.08993 * 109.47100 * 59.99644 * 1 2 3 23 23 H 1.09001 * 109.46583 * 179.97438 * 1 2 3 24 24 H 0.96703 * 113.99748 * 179.97438 * 4 2 1 25 25 H 1.07992 * 119.97702 * 0.02562 * 6 5 2 26 26 H 1.08000 * 119.97183 * 180.27954 * 9 7 6 27 27 H 1.08004 * 120.01952 * 179.70110 * 10 9 7 28 28 H 0.97000 * 120.00288 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0324 -0.7105 1.2304 6 6 2.3611 -2.0506 1.1687 7 6 2.8169 -2.7054 2.3006 8 9 3.1321 -4.0177 2.2398 9 6 2.9550 -2.0153 3.4939 10 6 2.6277 -0.6757 3.5595 11 6 2.1648 -0.0185 2.4268 12 8 1.8427 1.2990 2.4893 13 6 1.8835 1.8822 3.7042 14 1 2.2415 1.3264 4.5582 15 6 1.4659 3.1953 3.8572 16 7 1.0302 3.8726 2.8168 17 14 1.5219 4.0031 5.5406 18 1 2.9205 4.0109 6.0396 19 1 1.0261 5.3990 5.4365 20 1 0.6641 3.2416 6.4837 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 2.9703 -0.7113 -1.2332 25 1 2.2583 -2.5890 0.2382 26 1 3.3150 -2.5267 4.3744 27 1 2.7309 -0.1392 4.4911 28 1 0.7384 4.7914 2.9238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087111663.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:48 Heat of formation + Delta-G solvation = -106.813029 kcal Electronic energy + Delta-G solvation = -15416.616646 eV Core-core repulsion = 12540.715096 eV Total energy + Delta-G solvation = -2875.901550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.11965 -39.43136 -37.06001 -35.80628 -32.44467 -31.46995 -29.33432 -28.11834 -25.47888 -23.32131 -21.68008 -20.47368 -18.23439 -17.46578 -16.91600 -16.09290 -15.28698 -14.92259 -14.65264 -14.23526 -13.89039 -13.74765 -13.30667 -13.24203 -12.37015 -11.90196 -11.79936 -11.70162 -11.56737 -11.26365 -11.09323 -10.76767 -10.61050 -10.41921 -9.86906 -9.29814 -8.93272 -8.35372 -7.26207 -6.58963 -4.17745 1.85407 2.03743 3.05834 3.06721 3.09840 3.85128 4.25081 4.71296 4.92265 5.01054 5.08300 5.30325 5.54171 5.67158 5.89001 5.92783 6.05519 6.30873 6.45048 6.54397 6.63202 6.74658 6.83560 6.91810 7.03456 7.20222 7.62181 7.83262 8.05776 8.85953 9.50068 10.57796 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.027976 B = 0.009113 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.619261 B = 3071.709207 C = 3930.803462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.159 3.841 3 H 0.073 0.927 4 O -0.571 6.571 5 C -0.175 4.175 6 C -0.091 4.091 7 C -0.010 4.010 8 F -0.160 7.160 9 C -0.100 4.100 10 C -0.211 4.211 11 C 0.152 3.848 12 O -0.166 6.166 13 C -0.397 4.397 14 H 0.093 0.907 15 C 0.043 3.957 16 N -0.856 5.856 17 Si 0.942 3.058 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.269 1.269 21 H 0.078 0.922 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.374 0.626 25 H 0.131 0.869 26 H 0.120 0.880 27 H 0.138 0.862 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 -5.686 -0.750 6.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.101 3.899 3 H 0.090 0.910 4 O -0.376 6.376 5 C -0.177 4.177 6 C -0.110 4.110 7 C -0.029 4.029 8 F -0.139 7.139 9 C -0.119 4.119 10 C -0.230 4.230 11 C 0.097 3.903 12 O -0.069 6.069 13 C -0.473 4.473 14 H 0.110 0.890 15 C -0.162 4.162 16 N -0.490 5.490 17 Si 0.766 3.234 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.194 1.194 21 H 0.097 0.903 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.220 0.780 25 H 0.149 0.851 26 H 0.138 0.862 27 H 0.155 0.845 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.006 -5.359 -1.085 5.559 hybrid contribution 0.759 0.166 1.194 1.425 sum 1.765 -5.192 0.109 5.485 Atomic orbital electron populations 1.21666 0.92893 1.01830 1.02611 1.20372 0.94857 0.94200 0.80509 0.90958 1.86433 1.26438 1.80600 1.44163 1.19491 1.09298 0.93575 0.95339 1.20481 0.99452 0.93680 0.97346 1.17266 1.11574 0.78399 0.95700 1.91373 1.91882 1.33392 1.97227 1.20778 1.00385 0.94610 0.96126 1.21014 1.07764 0.94326 0.99903 1.19127 0.93110 0.85392 0.92681 1.83965 1.74397 1.15965 1.32540 1.21302 1.45302 0.96310 0.84366 0.88982 1.25288 0.95787 0.95531 0.99600 1.70014 1.38616 1.10703 1.29682 0.85768 0.79124 0.78445 0.80080 1.19423 1.20175 1.19395 0.90313 0.92427 0.92764 0.77965 0.85128 0.86199 0.84492 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.55 37.16 0.35 -2.07 15 2 C 0.16 3.02 3.52 -27.88 -0.10 2.92 15 3 H 0.07 1.50 7.69 -51.93 -0.40 1.10 15 4 O -0.57 -9.50 12.17 -35.23 -0.43 -9.93 15 5 C -0.18 -3.52 5.05 -104.44 -0.53 -4.05 15 6 C -0.09 -1.68 9.31 -39.53 -0.37 -2.05 15 7 C -0.01 -0.18 7.30 -39.38 -0.29 -0.47 15 8 F -0.16 -2.91 17.27 2.25 0.04 -2.87 15 9 C -0.10 -1.86 10.02 -39.54 -0.40 -2.25 15 10 C -0.21 -4.36 9.16 -39.41 -0.36 -4.72 15 11 C 0.15 3.43 6.62 -39.12 -0.26 3.17 15 12 O -0.17 -4.33 8.90 -0.04 0.00 -4.33 15 13 C -0.40 -10.36 9.49 30.88 0.29 -10.06 15 14 H 0.09 2.21 5.20 -52.49 -0.27 1.94 15 15 C 0.04 1.12 5.49 -17.52 -0.10 1.03 15 16 N -0.86 -23.59 13.67 55.48 0.76 -22.83 15 17 Si 0.94 19.44 29.55 -169.99 -5.02 14.41 15 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 20 H -0.27 -5.41 7.11 56.52 0.40 -5.00 15 21 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 24 H 0.37 4.88 9.06 45.56 0.41 5.29 15 25 H 0.13 2.20 7.35 -52.49 -0.39 1.81 15 26 H 0.12 1.90 8.06 -52.49 -0.42 1.48 15 27 H 0.14 2.76 5.64 -52.48 -0.30 2.47 15 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 LS Contribution 254.11 15.07 3.83 3.83 Total: -1.00 -28.26 254.11 -4.34 -32.60 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -1.77 Total: 7.67 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -1.75 Total: -18.55 kcal Atomic # 7 Polarization: -23.59 SS G_CDS: 0.76 Total: -22.83 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.43 Total: -14.26 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.26 -4.34 -32.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087111663.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.213 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds