Wall clock time and date at job start Mon Mar 30 2020 20:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47474 * 2 1 4 4 H 1.08996 * 109.47368 * 305.28831 * 3 2 1 5 5 N 1.46903 * 109.46924 * 65.28683 * 3 2 1 6 6 C 1.46900 * 111.00085 * 205.43797 * 5 3 2 7 7 C 1.50698 * 109.47181 * 174.81149 * 6 5 3 8 8 H 1.08000 * 119.99973 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99935 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99881 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99923 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46795 * 59.99814 * 11 9 7 13 13 H 1.48497 * 109.47215 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47328 * 299.99948 * 11 9 7 15 15 C 1.50697 * 109.47358 * 185.28308 * 3 2 1 16 16 N 1.29030 * 124.91419 * 104.99974 * 15 3 2 17 17 C 1.31780 * 117.12436 * 179.97438 * 16 15 3 18 18 C 1.33643 * 114.50075 * 359.97438 * 17 16 15 19 19 S 1.70976 * 124.91995 * 284.70019 * 15 3 2 20 20 H 1.08994 * 109.47373 * 294.93045 * 1 2 3 21 21 H 1.09002 * 109.46318 * 54.92858 * 1 2 3 22 22 H 1.08999 * 109.47204 * 174.92420 * 1 2 3 23 23 H 1.09005 * 109.47325 * 240.00164 * 2 1 3 24 24 H 1.09008 * 109.46806 * 120.00160 * 2 1 3 25 25 H 1.00902 * 111.00230 * 81.48623 * 5 3 2 26 26 H 1.09005 * 109.46818 * 54.81413 * 6 5 3 27 27 H 1.08998 * 109.47132 * 294.81120 * 6 5 3 28 28 H 0.97001 * 119.99776 * 179.97438 * 10 9 7 29 29 H 1.07997 * 122.75111 * 180.02562 * 17 16 15 30 30 H 1.08005 * 126.03722 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6016 1.9830 -0.8388 5 7 1.6574 2.0971 1.2582 6 6 1.5677 3.5535 1.0878 7 6 1.0514 4.1771 2.3589 8 1 0.8133 3.5538 3.2081 9 6 0.8821 5.5432 2.4372 10 7 1.1716 6.3020 1.4028 11 14 0.2414 6.3161 4.0125 12 1 1.1693 6.0049 5.1294 13 1 0.1509 7.7883 3.8403 14 1 -1.1046 5.7696 4.3202 15 6 3.5414 1.4445 -0.1308 16 7 4.1887 1.7505 -1.2042 17 6 5.5044 1.7012 -1.1470 18 6 5.9941 1.3336 0.0409 19 16 4.6336 1.0485 1.1236 20 1 -0.3634 0.4331 0.9318 21 1 -0.3632 0.5905 -0.8411 22 1 -0.3633 -1.0236 -0.0909 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8901 25 1 2.2989 1.8587 1.9996 26 1 0.8865 3.7821 0.2682 27 1 2.5558 3.9543 0.8617 28 1 1.0521 7.2631 1.4578 29 1 6.1352 1.9392 -1.9907 30 1 7.0393 1.2321 0.2934 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070634310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:15 Heat of formation + Delta-G solvation = 34.210067 kcal Electronic energy + Delta-G solvation = -13383.074004 eV Core-core repulsion = 11111.793601 eV Total energy + Delta-G solvation = -2271.280403 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.46586 -36.57792 -33.17985 -31.42503 -30.11218 -27.30277 -25.39789 -23.65386 -21.70430 -20.75801 -19.81571 -17.76355 -16.33892 -15.59542 -14.90339 -14.48146 -14.28170 -14.18138 -13.60432 -13.20048 -12.59879 -12.25324 -11.92901 -11.46666 -11.27107 -11.22716 -10.99279 -10.74901 -10.59398 -10.47617 -9.94426 -9.38691 -9.29486 -9.11272 -8.67323 -8.48166 -7.57819 -6.03533 -4.06409 0.95150 1.59580 2.00095 3.08842 3.33350 3.37315 3.40104 4.35572 4.43889 5.02459 5.26087 5.30278 5.31982 5.46996 5.59038 5.66501 5.87639 6.07261 6.19337 6.25901 6.35671 6.52980 6.79018 7.14080 7.33761 7.71203 7.98573 8.08713 8.21811 8.47866 9.01238 9.58176 11.07223 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.026656 B = 0.008036 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.155116 B = 3483.448144 C = 4022.428892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C 0.154 3.846 4 H 0.103 0.897 5 N -0.666 5.666 6 C 0.194 3.806 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.900 3.100 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.045 3.955 16 N -0.480 5.480 17 C 0.039 3.961 18 C -0.275 4.275 19 S 0.119 5.881 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.328 0.672 26 H 0.032 0.968 27 H -0.012 1.012 28 H 0.262 0.738 29 H 0.171 0.829 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 -11.730 -2.185 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C 0.038 3.962 4 H 0.121 0.879 5 N -0.296 5.296 6 C 0.067 3.933 7 C -0.554 4.554 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.727 3.273 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.235 4.235 16 N -0.194 5.194 17 C -0.112 4.112 18 C -0.415 4.415 19 S 0.373 5.627 20 H 0.092 0.908 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.146 0.854 26 H 0.050 0.950 27 H 0.005 0.995 28 H 0.072 0.928 29 H 0.188 0.812 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.229 -11.761 -1.760 12.991 hybrid contribution 1.475 1.159 -0.073 1.877 sum 6.704 -10.602 -1.834 12.677 Atomic orbital electron populations 1.21611 0.94408 1.00245 1.03409 1.21503 0.97346 0.94084 1.01190 1.20633 0.81910 0.96939 0.96673 0.87939 1.60993 1.52157 1.13609 1.02804 1.19651 0.95621 0.79924 0.98085 1.21089 1.43744 0.91660 0.98889 0.91861 1.24989 0.95623 0.97219 0.96666 1.69961 1.48531 1.05148 1.29850 0.86538 0.79520 0.77911 0.83305 1.20251 1.21348 1.20080 1.28857 1.03501 0.99807 0.91369 1.66321 1.07486 1.17447 1.28166 1.21813 0.90277 1.01223 0.97908 1.27008 1.03618 1.13415 0.97443 1.83900 0.97918 1.63051 1.17843 0.90821 0.93017 0.93680 0.92341 0.92032 0.85395 0.94994 0.99454 0.92815 0.81193 0.80970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.74 37.16 0.36 -1.63 16 2 C -0.10 -1.51 5.59 -26.73 -0.15 -1.66 16 3 C 0.15 2.80 2.51 -68.86 -0.17 2.62 16 4 H 0.10 2.04 7.71 -51.93 -0.40 1.63 16 5 N -0.67 -13.95 5.76 -109.22 -0.63 -14.58 16 6 C 0.19 5.07 5.26 -4.98 -0.03 5.04 16 7 C -0.52 -14.51 9.36 -34.44 -0.32 -14.83 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.32 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 11 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 15 C 0.04 0.80 6.16 -13.46 -0.08 0.72 16 16 N -0.48 -8.76 10.54 -11.86 -0.13 -8.89 16 17 C 0.04 0.60 11.35 -19.18 -0.22 0.38 16 18 C -0.28 -3.75 11.37 29.12 0.33 -3.42 16 19 S 0.12 1.81 21.96 -107.50 -2.36 -0.55 16 20 H 0.07 1.17 7.90 -51.93 -0.41 0.76 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 25 H 0.33 6.60 7.42 -39.29 -0.29 6.31 16 26 H 0.03 0.90 7.93 -51.93 -0.41 0.49 16 27 H -0.01 -0.36 8.10 -51.93 -0.42 -0.78 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 273.07 15.07 4.12 4.12 Total: -1.00 -30.70 273.07 -7.68 -38.37 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.02 Total: 2.33 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -0.38 Total: -11.25 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.02 Total: -49.68 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.36 Total: -0.55 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.70 -7.68 -38.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.584 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds