Wall clock time and date at job start Mon Mar 30 2020 20:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47474 * 2 1 4 4 H 1.08996 * 109.47368 * 305.28831 * 3 2 1 5 5 N 1.46903 * 109.46924 * 65.28683 * 3 2 1 6 6 C 1.46900 * 111.00085 * 205.43797 * 5 3 2 7 7 C 1.50698 * 109.47181 * 174.81149 * 6 5 3 8 8 H 1.08000 * 119.99973 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99935 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99881 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99923 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46795 * 59.99814 * 11 9 7 13 13 H 1.48497 * 109.47215 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47328 * 299.99948 * 11 9 7 15 15 C 1.50697 * 109.47358 * 185.28308 * 3 2 1 16 16 N 1.29030 * 124.91419 * 104.99974 * 15 3 2 17 17 C 1.31780 * 117.12436 * 179.97438 * 16 15 3 18 18 C 1.33643 * 114.50075 * 359.97438 * 17 16 15 19 19 S 1.70976 * 124.91995 * 284.70019 * 15 3 2 20 20 H 1.08994 * 109.47373 * 294.93045 * 1 2 3 21 21 H 1.09002 * 109.46318 * 54.92858 * 1 2 3 22 22 H 1.08999 * 109.47204 * 174.92420 * 1 2 3 23 23 H 1.09005 * 109.47325 * 240.00164 * 2 1 3 24 24 H 1.09008 * 109.46806 * 120.00160 * 2 1 3 25 25 H 1.00902 * 111.00230 * 81.48623 * 5 3 2 26 26 H 1.09005 * 109.46818 * 54.81413 * 6 5 3 27 27 H 1.08998 * 109.47132 * 294.81120 * 6 5 3 28 28 H 0.97001 * 119.99776 * 179.97438 * 10 9 7 29 29 H 1.07997 * 122.75111 * 180.02562 * 17 16 15 30 30 H 1.08005 * 126.03722 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6016 1.9830 -0.8388 5 7 1.6574 2.0971 1.2582 6 6 1.5677 3.5535 1.0878 7 6 1.0514 4.1771 2.3589 8 1 0.8133 3.5538 3.2081 9 6 0.8821 5.5432 2.4372 10 7 1.1716 6.3020 1.4028 11 14 0.2414 6.3161 4.0125 12 1 1.1693 6.0049 5.1294 13 1 0.1509 7.7883 3.8403 14 1 -1.1046 5.7696 4.3202 15 6 3.5414 1.4445 -0.1308 16 7 4.1887 1.7505 -1.2042 17 6 5.5044 1.7012 -1.1470 18 6 5.9941 1.3336 0.0409 19 16 4.6336 1.0485 1.1236 20 1 -0.3634 0.4331 0.9318 21 1 -0.3632 0.5905 -0.8411 22 1 -0.3633 -1.0236 -0.0909 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8901 25 1 2.2989 1.8587 1.9996 26 1 0.8865 3.7821 0.2682 27 1 2.5558 3.9543 0.8617 28 1 1.0521 7.2631 1.4578 29 1 6.1352 1.9392 -1.9907 30 1 7.0393 1.2321 0.2934 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070634310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:15 Heat of formation + Delta-G solvation = 12.928225 kcal Electronic energy + Delta-G solvation = -13383.996854 eV Core-core repulsion = 11111.793601 eV Total energy + Delta-G solvation = -2272.203253 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 226.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74002 -38.12424 -35.16610 -33.12490 -31.38221 -29.01310 -27.07343 -24.98519 -23.67833 -22.11129 -21.08467 -19.11706 -18.40553 -16.98840 -16.67244 -16.01183 -15.67798 -15.61917 -15.01987 -14.39188 -14.36863 -14.09809 -13.63472 -13.05707 -12.74982 -12.71122 -12.47795 -12.47024 -12.17965 -11.93789 -11.70081 -11.31704 -10.72145 -10.63608 -10.38072 -9.87811 -9.37807 -8.22561 -6.34786 -0.27470 0.38547 0.78543 1.41573 1.45430 1.53338 1.85893 2.39658 3.10015 3.11871 3.42982 4.05122 4.17750 4.23183 4.35960 4.51948 4.61471 4.70384 4.95469 5.03239 5.13294 5.18690 5.19886 5.29577 5.58427 5.60131 5.96067 6.29236 6.54437 6.79041 6.83021 7.36005 8.88730 Molecular weight = 226.08amu Principal moments of inertia in cm(-1) A = 0.026656 B = 0.008036 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.155116 B = 3483.448144 C = 4022.428892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 C 0.155 3.845 4 H 0.074 0.926 5 N -0.658 5.658 6 C 0.215 3.785 7 C -0.534 4.534 8 H 0.070 0.930 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.974 3.026 12 H -0.265 1.265 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.008 3.992 16 N -0.508 5.508 17 C 0.016 3.984 18 C -0.253 4.253 19 S 0.139 5.861 20 H 0.054 0.946 21 H 0.042 0.958 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.334 0.666 26 H 0.000 1.000 27 H -0.047 1.047 28 H 0.265 0.735 29 H 0.199 0.801 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.208 -12.809 -0.892 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C 0.040 3.960 4 H 0.092 0.908 5 N -0.288 5.288 6 C 0.087 3.913 7 C -0.572 4.572 8 H 0.088 0.912 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.798 3.202 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.190 1.190 15 C -0.271 4.271 16 N -0.224 5.224 17 C -0.135 4.135 18 C -0.393 4.393 19 S 0.392 5.608 20 H 0.073 0.927 21 H 0.061 0.939 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.153 0.847 26 H 0.018 0.982 27 H -0.029 1.029 28 H 0.073 0.927 29 H 0.216 0.784 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.110 -12.874 -0.472 14.258 hybrid contribution 1.308 1.453 -0.534 2.026 sum 7.418 -11.421 -1.006 13.656 Atomic orbital electron populations 1.21589 0.94060 1.01761 1.01981 1.21465 0.97529 0.91691 1.02486 1.20573 0.83036 0.98291 0.94092 0.90765 1.60867 1.52993 1.10370 1.04555 1.19194 0.92693 0.82970 0.96448 1.21474 1.43804 0.92327 0.99564 0.91207 1.25987 0.95593 0.97808 1.00361 1.70109 1.49599 1.05506 1.32289 0.85367 0.79269 0.76776 0.78791 1.18936 1.21015 1.19037 1.28576 1.03512 1.02189 0.92808 1.66293 1.09330 1.17663 1.29110 1.22285 0.89446 1.02058 0.99663 1.27515 1.04917 1.10721 0.96103 1.83740 0.97847 1.62216 1.16973 0.92700 0.93917 0.90725 0.90882 0.90694 0.84684 0.98178 1.02923 0.92671 0.78432 0.76999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.74 71.98 0.70 -3.11 16 2 C -0.09 -2.68 5.59 30.59 0.17 -2.51 16 3 C 0.15 5.78 2.51 44.17 0.11 5.89 16 4 H 0.07 3.15 7.71 -2.39 -0.02 3.13 16 5 N -0.66 -28.24 5.76 -499.46 -2.88 -31.12 16 6 C 0.21 11.73 5.26 85.56 0.45 12.18 16 7 C -0.53 -30.50 9.36 25.60 0.24 -30.26 16 8 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 9 C 0.00 0.04 5.46 84.66 0.46 0.51 16 10 N -0.94 -57.52 13.29 21.45 0.28 -57.23 16 11 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 C 0.01 0.30 6.16 88.52 0.55 0.84 16 16 N -0.51 -18.59 10.54 -191.45 -2.02 -20.61 16 17 C 0.02 0.45 11.35 83.66 0.95 1.40 16 18 C -0.25 -6.22 11.37 66.78 0.76 -5.46 16 19 S 0.14 4.02 21.96 -56.49 -1.24 2.78 16 20 H 0.05 1.73 7.90 -2.39 -0.02 1.71 16 21 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 24 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.33 13.55 7.42 -89.69 -0.67 12.88 16 26 H 0.00 0.01 7.93 -2.38 -0.02 -0.01 16 27 H -0.05 -2.84 8.10 -2.39 -0.02 -2.86 16 28 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.20 4.29 8.06 -2.91 -0.02 4.26 16 30 H 0.21 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -67.54 273.07 1.02 -66.52 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.46 Total: 13.80 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 4.39 Total: -20.53 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -4.61 Total: -108.96 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.24 Total: 2.78 kcal Total: -67.54 1.02 -66.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.447 kcal (2) G-P(sol) polarization free energy of solvation -67.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds