Wall clock time and date at job start Mon Mar 30 2020 20:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47473 * 2 1 4 4 C 1.50708 * 109.46891 * 240.00794 * 2 1 3 5 5 H 1.08002 * 119.99405 * 275.01981 * 4 2 1 6 6 C 1.37874 * 120.00104 * 95.01853 * 4 2 1 7 7 N 1.31513 * 119.99533 * 184.91572 * 6 4 2 8 8 Si 1.86794 * 120.00083 * 4.91644 * 6 4 2 9 9 H 1.48496 * 109.47500 * 84.83647 * 8 6 4 10 10 H 1.48507 * 109.46863 * 204.83655 * 8 6 4 11 11 H 1.48499 * 109.47405 * 324.83090 * 8 6 4 12 12 C 1.50694 * 109.47441 * 120.00375 * 2 1 3 13 13 C 1.38258 * 120.00080 * 59.99858 * 12 2 1 14 14 C 1.38208 * 120.00262 * 179.70022 * 13 12 2 15 15 C 1.38260 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.38208 * 120.00310 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00447 * 180.02562 * 16 15 14 18 18 F 1.39890 * 109.47391 * 119.99671 * 17 16 15 19 19 F 1.39898 * 109.47096 * 240.00224 * 17 16 15 20 20 C 1.38210 * 120.00156 * 239.72277 * 12 2 1 21 21 H 1.09002 * 109.47654 * 54.97542 * 1 2 3 22 22 H 1.08998 * 109.47594 * 174.97846 * 1 2 3 23 23 H 1.09005 * 109.46866 * 294.97876 * 1 2 3 24 24 H 0.97005 * 119.99510 * 180.02562 * 7 6 4 25 25 H 1.08003 * 119.99622 * 359.72707 * 13 12 2 26 26 H 1.07996 * 119.99902 * 180.02562 * 14 13 12 27 27 H 1.08001 * 120.00039 * 180.02562 * 15 14 13 28 28 H 1.08998 * 109.46770 * 359.97438 * 17 16 15 29 29 H 1.08007 * 120.00100 * 0.27528 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.1350 -1.7854 -1.2294 6 6 2.3605 0.0124 -2.3580 7 7 2.7061 -0.6128 -3.4622 8 14 2.3143 1.8793 -2.3170 9 1 3.6000 2.3947 -1.7816 10 1 2.1067 2.3996 -3.6923 11 1 1.1994 2.3279 -1.4446 12 6 2.0323 -0.7104 1.2303 13 6 1.6984 -2.0341 1.4491 14 6 2.1642 -2.6876 2.5743 15 6 2.9638 -2.0173 3.4815 16 6 3.2977 -0.6941 3.2630 17 6 4.1697 0.0363 4.2515 18 9 5.3326 0.4770 3.6109 19 9 3.4737 1.1365 4.7634 20 6 2.8317 -0.0405 2.1372 21 1 -0.3634 0.5898 -0.8415 22 1 -0.3634 -1.0237 -0.0899 23 1 -0.3633 0.4340 0.9316 24 1 2.9374 -0.1044 -4.2553 25 1 1.0738 -2.5576 0.7404 26 1 1.9036 -3.7216 2.7449 27 1 3.3282 -2.5280 4.3606 28 1 4.4362 -0.6361 5.0669 29 1 3.0926 0.9935 1.9664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260385708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:49 Heat of formation + Delta-G solvation = -93.250890 kcal Electronic energy + Delta-G solvation = -15208.510698 eV Core-core repulsion = 12345.570035 eV Total energy + Delta-G solvation = -2862.940662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.79786 -46.79031 -38.97443 -34.63937 -31.94492 -31.21451 -29.11603 -25.75306 -25.24138 -22.66501 -21.62956 -19.53774 -17.23666 -17.02128 -16.84040 -16.74547 -15.64875 -14.52009 -14.39988 -13.79548 -13.73313 -13.17609 -13.05669 -12.62172 -12.49829 -12.43679 -12.22517 -11.63152 -11.41407 -11.13391 -10.84395 -10.74720 -10.46172 -9.83466 -9.72159 -9.20592 -8.59683 -8.56572 -8.06821 -6.14287 -4.13985 1.60856 1.87299 3.26140 3.34302 3.35402 3.92432 4.15834 4.33479 4.36846 4.75071 5.17995 5.24385 5.30143 5.35218 5.71688 5.88505 5.97451 6.11281 6.37380 6.41350 6.57835 6.68109 6.75787 6.85669 6.93960 7.18439 7.36959 7.49099 7.66789 8.42862 8.89053 9.47288 10.98481 Molecular weight = 226.09amu Principal moments of inertia in cm(-1) A = 0.028006 B = 0.008758 C = 0.007738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.530691 B = 3196.189399 C = 3617.644566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.037 3.963 3 H 0.040 0.960 4 C -0.508 4.508 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.263 1.263 12 C -0.028 4.028 13 C -0.088 4.088 14 C -0.126 4.126 15 C -0.114 4.114 16 C -0.176 4.176 17 C 0.315 3.685 18 F -0.202 7.202 19 F -0.205 7.205 20 C -0.093 4.093 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.024 0.976 24 H 0.265 0.735 25 H 0.127 0.873 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 -0.684 14.103 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.018 3.982 3 H 0.058 0.942 4 C -0.546 4.546 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.700 3.300 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.188 1.188 12 C -0.028 4.028 13 C -0.106 4.106 14 C -0.144 4.144 15 C -0.132 4.132 16 C -0.177 4.177 17 C 0.261 3.739 18 F -0.183 7.183 19 F -0.186 7.186 20 C -0.111 4.111 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.145 0.855 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.014 -0.617 13.892 13.905 hybrid contribution 0.192 1.075 -0.209 1.112 sum 0.206 0.459 13.683 13.692 Atomic orbital electron populations 1.22001 0.97789 1.00747 0.98675 1.18372 0.92846 0.95727 0.91271 0.94230 1.20914 1.44063 0.95408 0.94190 0.90482 1.25028 0.94326 0.98301 0.95239 1.69889 1.45853 1.35906 1.01698 0.86917 0.79286 0.86453 0.77332 1.20002 1.21367 1.18801 1.20443 0.93568 0.94166 0.94608 1.21208 0.98810 0.94442 0.96164 1.21047 0.98763 0.99573 0.95026 1.20641 0.99713 0.93067 0.99820 1.20169 1.03460 0.95950 0.98078 1.20391 0.78144 0.83316 0.92030 1.93005 1.50238 1.91031 1.84057 1.92987 1.79962 1.57798 1.87850 1.20896 0.97299 0.99879 0.93058 0.93408 0.93240 0.95652 0.92493 0.85483 0.86165 0.86397 0.87055 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.91 37.15 0.33 -2.44 15 2 C 0.04 0.85 2.14 -92.93 -0.20 0.65 15 3 H 0.04 0.93 5.03 -51.93 -0.26 0.67 15 4 C -0.51 -13.82 8.64 -34.44 -0.30 -14.12 15 5 H 0.08 2.26 7.65 -52.49 -0.40 1.85 15 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 15 7 N -0.90 -26.93 13.96 55.43 0.77 -26.16 15 8 Si 0.87 21.29 26.99 -169.99 -4.59 16.70 15 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 11 H -0.26 -6.11 6.82 56.52 0.39 -5.72 15 12 C -0.03 -0.57 4.77 -104.63 -0.50 -1.07 15 13 C -0.09 -1.63 8.65 -39.58 -0.34 -1.97 15 14 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 15 15 C -0.11 -1.64 9.67 -39.58 -0.38 -2.02 15 16 C -0.18 -2.85 5.37 -104.62 -0.56 -3.41 15 17 C 0.31 4.34 5.45 36.00 0.20 4.54 15 18 F -0.20 -3.22 17.26 2.25 0.04 -3.18 15 19 F -0.20 -3.08 17.26 2.25 0.04 -3.04 15 20 C -0.09 -1.79 9.22 -39.58 -0.37 -2.15 15 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.05 0.97 7.57 -51.93 -0.39 0.58 15 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 15 24 H 0.27 7.49 8.31 -40.82 -0.34 7.16 15 25 H 0.13 2.33 7.56 -52.48 -0.40 1.93 15 26 H 0.12 1.48 8.06 -52.49 -0.42 1.05 15 27 H 0.12 1.25 7.95 -52.49 -0.42 0.83 15 28 H 0.11 1.06 7.88 -51.93 -0.41 0.65 15 29 H 0.12 2.26 7.95 -52.48 -0.42 1.85 15 LS Contribution 259.06 15.07 3.90 3.90 Total: -1.00 -29.91 259.06 -5.56 -35.47 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -3.11 Total: -1.36 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -2.62 Total: -22.35 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.77 Total: -26.16 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.08 Total: -6.21 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.70 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.91 -5.56 -35.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.778 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds