Wall clock time and date at job start Mon Mar 30 2020 20:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 C 1.39372 * 119.50515 * 299.73194 * 12 2 1 14 14 C 1.36094 * 120.99016 * 179.73097 * 13 12 2 15 15 C 1.40535 * 119.65079 * 0.55251 * 14 13 12 16 16 C 1.40541 * 121.28268 * 179.72993 * 15 14 13 17 17 C 1.36099 * 119.65702 * 180.02562 * 16 15 14 18 18 C 1.39379 * 120.98076 * 359.95310 * 17 16 15 19 19 C 1.36083 * 120.99587 * 0.02562 * 18 17 16 20 20 C 1.40538 * 119.65522 * 359.97438 * 19 18 17 21 21 C 1.36096 * 119.50605 * 119.99875 * 12 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 26 26 H 1.07998 * 119.50499 * 359.97438 * 13 12 2 27 27 H 1.07994 * 120.17904 * 180.27756 * 14 13 12 28 28 H 1.07995 * 120.17265 * 0.02562 * 16 15 14 29 29 H 1.07989 * 119.50822 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.49817 * 180.02562 * 18 17 16 31 31 H 1.08004 * 120.17866 * 179.97438 * 19 18 17 32 32 H 1.08006 * 120.16934 * 359.95758 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 6 1.6941 -2.0465 -1.4378 14 6 2.1267 -2.7157 -2.5410 15 6 2.9363 -2.0560 -3.4814 16 6 3.4068 -2.7157 -4.6298 17 6 4.1893 -2.0450 -5.5186 18 6 4.5320 -0.7104 -5.3084 19 6 4.0946 -0.0394 -4.2083 20 6 3.2844 -0.6989 -3.2681 21 6 2.8142 -0.0394 -2.1196 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.9026 -0.5283 4.4376 26 1 1.0761 -2.5572 -0.7142 27 1 1.8529 -3.7496 -2.6909 28 1 3.1486 -3.7494 -4.8060 29 1 4.5498 -2.5543 -6.4000 30 1 5.1541 -0.2012 -6.0296 31 1 4.3685 0.9945 -4.0584 32 1 3.0713 0.9948 -1.9438 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034412753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:49:13 Heat of formation + Delta-G solvation = 34.162251 kcal Electronic energy + Delta-G solvation = -14611.131707 eV Core-core repulsion = 12307.945623 eV Total energy + Delta-G solvation = -2303.186084 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.94468 -36.82950 -33.90954 -32.31063 -31.43014 -29.19907 -28.37364 -25.09134 -23.13261 -22.82480 -21.51106 -20.06974 -16.95478 -16.76564 -16.10529 -15.61629 -14.69301 -14.33016 -13.71213 -13.42527 -13.19958 -12.96601 -12.76676 -12.39155 -12.18526 -11.71681 -11.55104 -11.16649 -10.95608 -10.53681 -10.41311 -10.16045 -9.97222 -9.57293 -9.38465 -9.12701 -8.60789 -7.96966 -7.39660 -6.11306 -4.11565 0.96615 1.47381 2.50707 3.24272 3.34942 3.37319 3.46378 4.36843 4.58898 4.94659 5.10065 5.20816 5.23338 5.44485 5.47889 5.63584 5.76353 5.86071 6.02311 6.10384 6.28775 6.34454 6.38881 6.53313 6.56691 6.70051 6.71494 6.83035 6.89439 7.07152 7.13079 7.21600 7.53401 7.55514 7.70501 8.46531 8.92504 9.49482 11.01490 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.047914 B = 0.006711 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.236567 B = 4171.166330 C = 4331.635163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.035 3.965 3 H 0.036 0.964 4 C -0.510 4.510 5 H 0.076 0.924 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.266 1.266 12 C -0.018 4.018 13 C -0.085 4.085 14 C -0.125 4.125 15 C -0.064 4.064 16 C -0.103 4.103 17 C -0.135 4.135 18 C -0.129 4.129 19 C -0.107 4.107 20 C -0.045 4.045 21 C -0.132 4.132 22 H 0.054 0.946 23 H 0.031 0.969 24 H 0.042 0.958 25 H 0.265 0.735 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 -0.313 -14.918 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.054 0.946 4 C -0.548 4.548 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.191 1.191 12 C -0.018 4.018 13 C -0.103 4.103 14 C -0.143 4.143 15 C -0.064 4.064 16 C -0.121 4.121 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.125 4.125 20 C -0.045 4.045 21 C -0.150 4.150 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.145 0.855 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.688 -0.318 -14.714 14.733 hybrid contribution -0.516 0.737 0.325 0.956 sum 0.172 0.418 -14.389 14.396 Atomic orbital electron populations 1.22155 0.98295 1.00989 0.98706 1.18418 0.92052 0.96232 0.91709 0.94569 1.20928 1.32229 1.13657 0.87990 0.90548 1.24994 0.95688 0.96629 0.95762 1.69890 1.45459 1.40298 0.97946 0.86834 0.80575 0.83754 0.76935 1.20561 1.22489 1.19148 1.19976 0.93387 0.93679 0.94743 1.20929 0.98703 0.94424 0.96201 1.20962 0.99050 0.99408 0.94848 1.18046 0.99180 0.93480 0.95663 1.20963 0.97962 0.99305 0.93887 1.20683 0.99973 0.94959 0.99659 1.20702 1.01041 0.94908 0.98018 1.20998 0.97681 0.99586 0.94209 1.18102 0.97813 0.93264 0.95342 1.20918 1.00112 0.99951 0.93971 0.92672 0.95020 0.93987 0.92558 0.85467 0.86237 0.86241 0.86769 0.86730 0.86091 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.48 37.16 0.32 -2.76 16 2 C 0.03 0.80 2.05 -92.92 -0.19 0.61 16 3 H 0.04 0.85 6.88 -51.93 -0.36 0.49 16 4 C -0.51 -14.04 8.79 -34.44 -0.30 -14.34 16 5 H 0.08 2.30 7.83 -52.49 -0.41 1.89 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 8 Si 0.89 21.63 24.37 -169.99 -4.14 17.49 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.21 16 10 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.27 -6.20 6.53 56.52 0.37 -5.83 16 12 C -0.02 -0.37 4.71 -104.97 -0.49 -0.86 16 13 C -0.08 -1.63 8.58 -39.93 -0.34 -1.97 16 14 C -0.12 -2.10 9.77 -39.49 -0.39 -2.49 16 15 C -0.06 -1.07 5.74 -106.83 -0.61 -1.68 16 16 C -0.10 -1.44 9.77 -39.48 -0.39 -1.83 16 17 C -0.13 -1.71 9.95 -39.93 -0.40 -2.11 16 18 C -0.13 -1.66 9.95 -39.93 -0.40 -2.06 16 19 C -0.11 -1.57 9.77 -39.49 -0.39 -1.95 16 20 C -0.05 -0.79 5.74 -106.83 -0.61 -1.40 16 21 C -0.13 -2.49 9.37 -39.48 -0.37 -2.86 16 22 H 0.05 1.12 7.36 -51.93 -0.38 0.74 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.93 3.27 -51.93 -0.17 0.76 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.13 2.46 7.53 -52.49 -0.40 2.06 16 27 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 28 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.12 2.11 7.89 -52.48 -0.41 1.69 16 LS Contribution 264.44 15.07 3.99 3.99 Total: -1.00 -29.99 264.44 -7.89 -37.88 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -3.85 Total: 0.79 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -4.66 Total: -33.78 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.77 Total: -26.36 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.99 -7.89 -37.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034412753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.041 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds