Wall clock time and date at job start Mon Mar 30 2020 20:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46995 * 2 1 4 4 C 1.50702 * 109.47214 * 239.99896 * 2 1 3 5 5 H 1.08000 * 119.99962 * 240.00565 * 4 2 1 6 6 C 1.37878 * 120.00073 * 59.99503 * 4 2 1 7 7 N 1.31518 * 119.99801 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00086 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47259 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47501 * 120.00570 * 8 6 4 11 11 H 1.48505 * 109.47051 * 240.00282 * 8 6 4 12 12 C 1.50703 * 109.47121 * 119.99601 * 2 1 3 13 13 C 1.39373 * 119.50193 * 60.00267 * 12 2 1 14 14 C 1.36095 * 120.98824 * 179.97438 * 13 12 2 15 15 C 1.40546 * 119.65123 * 359.97438 * 14 13 12 16 16 C 1.40538 * 121.28195 * 180.02562 * 15 14 13 17 17 C 1.36099 * 119.65130 * 179.97438 * 16 15 14 18 18 C 1.39379 * 120.98764 * 359.97438 * 17 16 15 19 19 C 1.36085 * 120.98780 * 359.97438 * 18 17 16 20 20 C 1.40537 * 119.65749 * 0.02562 * 19 18 17 21 21 C 1.36086 * 119.50505 * 239.97572 * 12 2 1 22 22 H 1.09000 * 109.47196 * 60.00009 * 1 2 3 23 23 H 1.09003 * 109.47451 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47092 * 300.00239 * 1 2 3 25 25 H 0.97003 * 119.99850 * 179.97438 * 7 6 4 26 26 H 1.07999 * 119.51069 * 0.02562 * 13 12 2 27 27 H 1.07998 * 120.17687 * 179.72646 * 14 13 12 28 28 H 1.07996 * 120.17519 * 359.97438 * 16 15 14 29 29 H 1.08000 * 119.50460 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.49947 * 179.97438 * 18 17 16 31 31 H 1.08001 * 120.17314 * 180.02562 * 19 18 17 32 32 H 1.07996 * 120.17534 * 0.04866 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1455 -2.2878 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1465 -0.1874 -4.8165 12 6 2.0323 -0.7103 1.2305 13 6 1.6893 -2.0447 1.4408 14 6 2.1266 -2.7156 2.5413 15 6 2.9368 -2.0559 3.4814 16 6 3.4078 -2.7157 4.6294 17 6 4.1909 -2.0450 5.5178 18 6 4.5347 -0.7109 5.3069 19 6 4.0979 -0.0403 4.2062 20 6 3.2873 -0.6997 3.2664 21 6 2.8145 -0.0394 2.1194 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7093 1.1616 -3.4845 26 1 1.0679 -2.5543 0.7194 27 1 1.8492 -3.7482 2.6934 28 1 3.1498 -3.7495 4.8056 29 1 4.5519 -2.5545 6.3990 30 1 5.1571 -0.2018 6.0278 31 1 4.3726 0.9932 4.0557 32 1 3.0719 0.9946 1.9435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034412754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:49:16 Heat of formation + Delta-G solvation = 25.611558 kcal Electronic energy + Delta-G solvation = -14566.016122 eV Core-core repulsion = 12262.459252 eV Total energy + Delta-G solvation = -2303.556870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 226.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86125 -36.67382 -33.83685 -32.25217 -31.02604 -29.03619 -27.93912 -25.15556 -22.91818 -22.75524 -21.42859 -20.03957 -16.86998 -16.61366 -15.75159 -15.58675 -14.55421 -14.26076 -13.61909 -13.22770 -13.18460 -12.88647 -12.63723 -12.08719 -11.59702 -11.51990 -11.12996 -11.00476 -10.86179 -10.52209 -10.42672 -10.19269 -10.07364 -9.48956 -9.42693 -8.97082 -8.40772 -7.89231 -7.31568 -6.04049 -4.11121 1.02947 1.54460 2.57574 3.27116 3.35424 3.39603 3.54218 4.39852 4.68273 5.00584 5.14730 5.26859 5.28738 5.49985 5.55812 5.72947 5.84087 6.01890 6.12425 6.17790 6.44833 6.59989 6.67766 6.73136 6.82301 6.84135 7.01311 7.16032 7.19373 7.27964 7.33413 7.62570 7.71196 7.92862 8.06352 8.35658 8.91726 9.53813 11.01528 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.043150 B = 0.006459 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.746062 B = 4334.113493 C = 4423.760518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.067 3.933 3 H 0.036 0.964 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.023 4.023 13 C -0.086 4.086 14 C -0.128 4.128 15 C -0.066 4.066 16 C -0.103 4.103 17 C -0.137 4.137 18 C -0.130 4.130 19 C -0.107 4.107 20 C -0.044 4.044 21 C -0.135 4.135 22 H 0.086 0.914 23 H 0.028 0.972 24 H 0.009 0.991 25 H 0.260 0.740 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 -4.023 11.821 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 H 0.054 0.946 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.023 4.023 13 C -0.104 4.104 14 C -0.146 4.146 15 C -0.066 4.066 16 C -0.121 4.121 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.125 4.125 20 C -0.044 4.044 21 C -0.153 4.153 22 H 0.105 0.895 23 H 0.048 0.952 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.335 -3.909 11.679 12.760 hybrid contribution 0.362 -0.448 -0.898 1.066 sum 3.697 -4.357 10.782 12.202 Atomic orbital electron populations 1.21784 0.97535 0.99329 1.00363 1.17975 0.92978 0.95532 0.88618 0.94608 1.21127 1.31185 1.12452 0.89817 0.92387 1.24958 0.95009 0.94993 0.98965 1.69897 1.36687 1.22862 1.23363 0.86521 0.78674 0.79765 0.83011 1.19739 1.20971 1.20978 1.20435 0.92585 0.93629 0.95645 1.20941 0.98550 0.94667 0.96263 1.20957 0.99249 0.99324 0.95034 1.18027 0.99398 0.93548 0.95674 1.20948 0.97989 0.99230 0.93961 1.20663 1.00158 0.94992 0.99667 1.20689 1.01137 0.94913 0.98025 1.21005 0.97723 0.99562 0.94215 1.18135 0.97660 0.93235 0.95389 1.20945 1.00365 0.99954 0.94014 0.89540 0.95242 0.97201 0.92962 0.85733 0.86443 0.86361 0.86863 0.86798 0.86119 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.78 37.16 0.33 -2.83 16 2 C 0.07 1.67 2.46 -92.92 -0.23 1.44 16 3 H 0.04 0.95 7.82 -51.93 -0.41 0.54 16 4 C -0.51 -13.68 8.22 -34.44 -0.28 -13.96 16 5 H 0.06 1.57 7.59 -52.49 -0.40 1.17 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C -0.02 -0.50 4.70 -104.97 -0.49 -0.99 16 13 C -0.09 -1.71 8.58 -39.93 -0.34 -2.05 16 14 C -0.13 -2.21 9.77 -39.48 -0.39 -2.60 16 15 C -0.07 -1.15 5.74 -106.83 -0.61 -1.76 16 16 C -0.10 -1.49 9.77 -39.48 -0.39 -1.88 16 17 C -0.14 -1.80 9.95 -39.93 -0.40 -2.20 16 18 C -0.13 -1.74 9.95 -39.93 -0.40 -2.14 16 19 C -0.11 -1.64 9.77 -39.49 -0.39 -2.02 16 20 C -0.04 -0.80 5.74 -106.83 -0.61 -1.41 16 21 C -0.13 -2.68 9.37 -39.48 -0.37 -3.05 16 22 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 23 H 0.03 0.66 7.34 -51.93 -0.38 0.28 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.12 2.45 7.52 -52.49 -0.39 2.06 16 27 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.12 2.26 7.89 -52.49 -0.41 1.84 16 LS Contribution 271.26 15.07 4.09 4.09 Total: -1.00 -28.44 271.26 -8.95 -37.40 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.98 Total: 0.69 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -4.66 Total: -33.87 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.63 Total: -24.34 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.44 -8.95 -37.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034412754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.008 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds