Wall clock time and date at job start Mon Mar 30 2020 20:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 113.99975 * 2 1 4 4 C 1.52998 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47295 * 305.00127 * 4 3 2 6 6 C 1.50697 * 109.47007 * 65.00545 * 4 3 2 7 7 H 1.07999 * 120.00196 * 35.11090 * 6 4 3 8 8 C 1.37882 * 119.99911 * 215.11960 * 6 4 3 9 9 N 1.31518 * 119.99939 * 5.14325 * 8 6 4 10 10 Si 1.86797 * 119.99995 * 185.14520 * 8 6 4 11 11 H 1.48498 * 109.47251 * 89.99707 * 10 8 6 12 12 H 1.48504 * 109.47022 * 209.99876 * 10 8 6 13 13 H 1.48503 * 109.46976 * 329.99497 * 10 8 6 14 14 C 1.50700 * 109.47197 * 185.00283 * 4 3 2 15 15 N 1.38696 * 126.04386 * 295.05066 * 14 4 3 16 16 H 0.97004 * 125.98248 * 0.02562 * 15 14 4 17 17 C 1.34758 * 108.03343 * 180.24838 * 15 14 4 18 18 O 1.21790 * 125.94766 * 179.77062 * 17 15 14 19 19 N 1.34760 * 108.10784 * 359.77024 * 17 15 14 20 20 H 0.97000 * 125.98830 * 180.02562 * 19 17 15 21 21 C 1.32864 * 126.04419 * 114.89197 * 14 4 3 22 22 C 1.50708 * 126.04078 * 0.02562 * 21 14 4 23 23 H 1.08995 * 109.46951 * 299.99628 * 1 2 3 24 24 H 1.08998 * 109.46972 * 60.00039 * 1 2 3 25 25 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47029 * 59.99834 * 3 2 1 27 27 H 1.08997 * 109.47376 * 300.00214 * 3 2 1 28 28 H 0.96994 * 120.00149 * 180.02562 * 9 8 6 29 29 H 1.08997 * 109.46989 * 179.71649 * 22 21 14 30 30 H 1.09002 * 109.46775 * 59.71460 * 22 21 14 31 31 H 1.09002 * 109.46955 * 299.71613 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9893 0.5463 -1.2868 7 1 3.4630 0.7530 -2.2069 8 6 5.0764 -0.3019 -1.2900 9 7 5.6549 -0.6337 -0.1564 10 14 5.7276 -0.9796 -2.9043 11 1 6.7581 -0.0589 -3.4479 12 1 6.3309 -2.3166 -2.6724 13 1 4.6112 -1.1021 -3.8759 14 6 4.1479 2.5559 0.1245 15 7 4.0532 3.5792 -0.8069 16 1 3.5803 3.5379 -1.6529 17 6 4.7370 4.6393 -0.3330 18 8 4.8694 5.7129 -0.8926 19 7 5.2490 4.3047 0.8678 20 1 5.7868 4.8766 1.4375 21 6 4.8717 2.9995 1.1467 22 6 5.2257 2.2198 2.3869 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 6.4198 -1.2301 -0.1586 29 1 5.8319 2.8413 3.0460 30 1 5.7887 1.3292 2.1078 31 1 4.3124 1.9252 2.9038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259707788.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:04 Heat of formation + Delta-G solvation = -50.810092 kcal Electronic energy + Delta-G solvation = -16012.932065 eV Core-core repulsion = 13295.212041 eV Total energy + Delta-G solvation = -2717.720025 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.45091 -37.23944 -36.24807 -33.83023 -32.73819 -31.11793 -29.33388 -26.31922 -25.15269 -24.48057 -21.67381 -21.39737 -19.11686 -17.33043 -16.28149 -15.71033 -15.52380 -15.26787 -14.84509 -14.69926 -14.32317 -13.86433 -12.77200 -12.59356 -12.44733 -12.36404 -11.79417 -11.41001 -11.16976 -10.94194 -10.89322 -10.62678 -10.48287 -9.93289 -9.78240 -9.39006 -9.33594 -8.84295 -8.57106 -6.75723 -6.13705 -4.16516 3.11514 3.28951 3.34739 3.37763 3.43262 3.64136 4.36627 4.37164 4.70360 5.23684 5.70183 5.74844 5.76228 5.89635 6.02394 6.09409 6.12417 6.28979 6.39533 6.56929 6.59122 6.73564 6.89589 7.38141 7.47491 7.77482 7.84837 8.01233 8.16278 8.23911 8.87913 9.09194 9.47609 10.95012 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.011948 C = 0.009206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.105764 B = 2342.990959 C = 3040.762391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.078 3.922 4 C 0.093 3.907 5 H 0.097 0.903 6 C -0.506 4.506 7 H 0.056 0.944 8 C 0.075 3.925 9 N -0.881 5.881 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.090 3.910 15 N -0.625 5.625 16 H 0.426 0.574 17 C 0.645 3.355 18 O -0.606 6.606 19 N -0.637 5.637 20 H 0.420 0.580 21 C -0.034 4.034 22 C -0.066 4.066 23 H 0.029 0.971 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.024 0.976 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 2.281 4.435 6.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.002 3.998 4 C 0.073 3.927 5 H 0.115 0.885 6 C -0.544 4.544 7 H 0.074 0.926 8 C -0.129 4.129 9 N -0.517 5.517 10 Si 0.720 3.280 11 H -0.208 1.208 12 H -0.211 1.211 13 H -0.198 1.198 14 C -0.016 4.016 15 N -0.266 5.266 16 H 0.266 0.734 17 C 0.345 3.655 18 O -0.488 6.488 19 N -0.281 5.281 20 H 0.259 0.741 21 C -0.137 4.137 22 C -0.124 4.124 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.095 0.905 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.239 2.641 4.169 6.506 hybrid contribution 0.350 0.111 -1.102 1.161 sum -3.889 2.753 3.068 5.667 Atomic orbital electron populations 1.22640 0.83554 1.01649 0.98812 1.88055 1.17084 1.28269 1.94980 1.22618 0.96723 0.83395 0.97113 1.17597 0.87292 0.85976 1.01851 0.88501 1.20778 1.13437 1.27230 0.92940 0.92604 1.24908 0.96458 0.95302 0.96263 1.69856 1.22062 1.34738 1.25089 0.86588 0.79172 0.78281 0.83947 1.20752 1.21113 1.19793 1.21009 1.02159 0.91837 0.86629 1.43182 1.49285 1.12553 1.21553 0.73423 1.16196 0.82495 0.84508 0.82329 1.90997 1.69166 1.23939 1.64733 1.43067 1.50932 1.14294 1.19785 0.74149 1.19770 1.08017 0.85362 1.00513 1.20122 1.01526 0.99141 0.91637 0.95217 0.95054 0.90492 0.95829 0.95235 0.92688 0.93070 0.89166 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.52 10.46 -35.23 -0.37 -7.89 16 3 C 0.08 1.56 5.29 37.16 0.20 1.75 16 4 C 0.09 2.08 2.52 -92.93 -0.23 1.85 16 5 H 0.10 2.38 6.47 -51.93 -0.34 2.04 16 6 C -0.51 -12.81 8.05 -34.44 -0.28 -13.09 16 7 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 8 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 9 N -0.88 -23.43 12.77 55.43 0.71 -22.72 16 10 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.09 1.89 5.67 -81.34 -0.46 1.42 16 15 N -0.63 -12.65 6.15 -12.60 -0.08 -12.73 16 16 H 0.43 7.99 8.96 -40.82 -0.37 7.62 16 17 C 0.64 13.52 9.32 -86.95 -0.81 12.71 16 18 O -0.61 -14.27 18.06 5.11 0.09 -14.18 16 19 N -0.64 -11.54 6.15 -12.60 -0.08 -11.61 16 20 H 0.42 6.22 8.96 -40.82 -0.37 5.86 16 21 C -0.03 -0.64 7.18 -81.33 -0.58 -1.23 16 22 C -0.07 -1.07 9.57 36.01 0.34 -0.73 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 274.18 15.07 4.13 4.13 Total: -1.00 -30.33 274.18 -5.42 -35.75 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.99 Total: 7.44 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.81 Total: 6.12 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.55 Total: -47.07 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.28 Total: -22.07 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.33 -5.42 -35.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259707788.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.062 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds