Wall clock time and date at job start Mon Mar 30 2020 20:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 113.99975 * 2 1 4 4 C 1.52998 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47295 * 305.00127 * 4 3 2 6 6 C 1.50697 * 109.47007 * 65.00545 * 4 3 2 7 7 H 1.07999 * 120.00196 * 35.11090 * 6 4 3 8 8 C 1.37882 * 119.99911 * 215.11960 * 6 4 3 9 9 N 1.31518 * 119.99939 * 5.14325 * 8 6 4 10 10 Si 1.86797 * 119.99995 * 185.14520 * 8 6 4 11 11 H 1.48498 * 109.47251 * 89.99707 * 10 8 6 12 12 H 1.48504 * 109.47022 * 209.99876 * 10 8 6 13 13 H 1.48503 * 109.46976 * 329.99497 * 10 8 6 14 14 C 1.50700 * 109.47197 * 185.00283 * 4 3 2 15 15 N 1.38696 * 126.04386 * 295.05066 * 14 4 3 16 16 H 0.97004 * 125.98248 * 0.02562 * 15 14 4 17 17 C 1.34758 * 108.03343 * 180.24838 * 15 14 4 18 18 O 1.21790 * 125.94766 * 179.77062 * 17 15 14 19 19 N 1.34760 * 108.10784 * 359.77024 * 17 15 14 20 20 H 0.97000 * 125.98830 * 180.02562 * 19 17 15 21 21 C 1.32864 * 126.04419 * 114.89197 * 14 4 3 22 22 C 1.50708 * 126.04078 * 0.02562 * 21 14 4 23 23 H 1.08995 * 109.46951 * 299.99628 * 1 2 3 24 24 H 1.08998 * 109.46972 * 60.00039 * 1 2 3 25 25 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47029 * 59.99834 * 3 2 1 27 27 H 1.08997 * 109.47376 * 300.00214 * 3 2 1 28 28 H 0.96994 * 120.00149 * 180.02562 * 9 8 6 29 29 H 1.08997 * 109.46989 * 179.71649 * 22 21 14 30 30 H 1.09002 * 109.46775 * 59.71460 * 22 21 14 31 31 H 1.09002 * 109.46955 * 299.71613 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9893 0.5463 -1.2868 7 1 3.4630 0.7530 -2.2069 8 6 5.0764 -0.3019 -1.2900 9 7 5.6549 -0.6337 -0.1564 10 14 5.7276 -0.9796 -2.9043 11 1 6.7581 -0.0589 -3.4479 12 1 6.3309 -2.3166 -2.6724 13 1 4.6112 -1.1021 -3.8759 14 6 4.1479 2.5559 0.1245 15 7 4.0532 3.5792 -0.8069 16 1 3.5803 3.5379 -1.6529 17 6 4.7370 4.6393 -0.3330 18 8 4.8694 5.7129 -0.8926 19 7 5.2490 4.3047 0.8678 20 1 5.7868 4.8766 1.4375 21 6 4.8717 2.9995 1.1467 22 6 5.2257 2.2198 2.3869 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 6.4198 -1.2301 -0.1586 29 1 5.8319 2.8413 3.0460 30 1 5.7887 1.3292 2.1078 31 1 4.3124 1.9252 2.9038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259707788.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:04 Heat of formation + Delta-G solvation = -73.013733 kcal Electronic energy + Delta-G solvation = -16013.894887 eV Core-core repulsion = 13295.212041 eV Total energy + Delta-G solvation = -2718.682847 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.04832 -38.77015 -37.90277 -35.56670 -34.39341 -32.83153 -30.84409 -27.69542 -26.85818 -26.03663 -23.28273 -23.04707 -20.73229 -19.07024 -18.02985 -17.22694 -17.10389 -16.84614 -16.50481 -16.33227 -15.94362 -15.36237 -14.40341 -14.07402 -14.02907 -13.91471 -13.33644 -12.89481 -12.74418 -12.64020 -12.62334 -12.24699 -12.06661 -11.53456 -11.45646 -11.19377 -11.05569 -10.55371 -10.31453 -8.38134 -8.07391 -6.14793 1.40489 1.45583 1.51402 1.57649 1.88254 2.01572 2.46379 2.82825 3.22410 3.34367 4.36368 4.40803 4.49306 4.55760 4.66968 4.68320 4.81698 4.90255 4.97876 5.03577 5.08122 5.24697 5.46080 5.66022 5.81059 5.86757 6.17390 6.44562 6.57324 6.64120 6.96005 7.49558 7.50053 8.98590 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.011948 C = 0.009206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.105764 B = 2342.990959 C = 3040.762391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.084 3.916 4 C 0.097 3.903 5 H 0.074 0.926 6 C -0.512 4.512 7 H 0.048 0.952 8 C 0.031 3.969 9 N -0.903 5.903 10 Si 0.939 3.061 11 H -0.285 1.285 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.062 3.938 15 N -0.620 5.620 16 H 0.429 0.571 17 C 0.635 3.365 18 O -0.635 6.635 19 N -0.619 5.619 20 H 0.436 0.564 21 C -0.017 4.017 22 C -0.063 4.063 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.092 0.908 26 H 0.043 0.957 27 H 0.033 0.967 28 H 0.262 0.738 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.996 2.605 5.102 7.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.007 3.993 4 C 0.077 3.923 5 H 0.092 0.908 6 C -0.550 4.550 7 H 0.066 0.934 8 C -0.170 4.170 9 N -0.541 5.541 10 Si 0.767 3.233 11 H -0.212 1.212 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.045 4.045 15 N -0.261 5.261 16 H 0.270 0.730 17 C 0.335 3.665 18 O -0.520 6.520 19 N -0.263 5.263 20 H 0.278 0.722 21 C -0.121 4.121 22 C -0.121 4.121 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.111 0.889 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.663 2.961 4.852 7.352 hybrid contribution 0.412 0.012 -1.265 1.330 sum -4.251 2.973 3.587 6.306 Atomic orbital electron populations 1.22885 0.80839 1.03260 1.00229 1.87991 1.20174 1.28687 1.95269 1.22490 0.95026 0.83603 0.98137 1.17411 0.89164 0.86237 0.99504 0.90751 1.21041 1.13043 1.27054 0.93877 0.93401 1.25478 0.97090 0.96100 0.98366 1.69938 1.22498 1.35543 1.26078 0.85851 0.78445 0.77630 0.81423 1.21186 1.20927 1.19617 1.20818 1.04027 0.91743 0.87869 1.43150 1.49002 1.12257 1.21658 0.73032 1.16289 0.82964 0.84242 0.83014 1.90972 1.70331 1.25033 1.65656 1.42987 1.50149 1.14154 1.19020 0.72160 1.20206 1.05812 0.85367 1.00746 1.20169 1.02535 0.98353 0.91020 0.93248 0.94070 0.88917 0.93933 0.94879 0.92879 0.89551 0.91477 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.93 16 2 O -0.40 -16.14 10.46 -148.98 -1.56 -17.69 16 3 C 0.08 3.25 5.29 71.98 0.38 3.63 16 4 C 0.10 4.31 2.52 -12.29 -0.03 4.27 16 5 H 0.07 3.65 6.47 -2.39 -0.02 3.64 16 6 C -0.51 -25.91 8.05 25.60 0.21 -25.71 16 7 H 0.05 2.44 7.82 -2.91 -0.02 2.41 16 8 C 0.03 1.60 5.45 84.66 0.46 2.06 16 9 N -0.90 -48.22 12.77 21.45 0.27 -47.95 16 10 Si 0.94 42.56 29.54 68.60 2.03 44.58 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 14 C 0.06 2.52 5.67 40.30 0.23 2.75 16 15 N -0.62 -24.59 6.15 -311.98 -1.92 -26.51 16 16 H 0.43 15.93 8.96 -92.71 -0.83 15.10 16 17 C 0.64 25.85 9.32 179.07 1.67 27.52 16 18 O -0.63 -29.37 18.06 -4.64 -0.08 -29.45 16 19 N -0.62 -21.10 6.15 -311.97 -1.92 -23.02 16 20 H 0.44 11.75 8.96 -92.71 -0.83 10.92 16 21 C -0.02 -0.63 7.18 40.30 0.29 -0.34 16 22 C -0.06 -1.89 9.57 71.24 0.68 -1.21 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -63.73 274.18 1.45 -62.28 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.51 Total: 22.85 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 5.14 Total: 14.91 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -3.56 Total: -97.47 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -1.64 Total: -47.15 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -63.73 1.45 -62.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259707788.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.736 kcal (2) G-P(sol) polarization free energy of solvation -63.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds