Wall clock time and date at job start Mon Mar 30 2020 20:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46969 * 2 1 4 4 C 1.34522 * 126.69294 * 89.97369 * 3 2 1 5 5 O 1.21537 * 123.77089 * 0.03570 * 4 3 2 6 6 N 1.33798 * 112.46095 * 180.02562 * 4 3 2 7 7 C 1.46499 * 124.17782 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.46992 * 90.02623 * 7 6 4 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99594 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99875 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47061 * 90.00257 * 12 10 8 14 14 H 1.48497 * 109.46906 * 209.99430 * 12 10 8 15 15 H 1.48498 * 109.47403 * 329.99876 * 12 10 8 16 16 C 1.34765 * 111.63852 * 0.23508 * 6 4 3 17 17 O 1.21243 * 127.15158 * 179.73580 * 16 6 4 18 18 C 1.47317 * 126.68928 * 270.02179 * 3 2 1 19 19 H 1.08994 * 110.60279 * 61.43353 * 18 3 2 20 20 C 1.53005 * 110.59493 * 298.64461 * 18 3 2 21 21 H 1.08994 * 109.47130 * 60.00174 * 1 2 3 22 22 H 1.09004 * 109.46897 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46666 * 299.99512 * 1 2 3 24 24 H 1.09000 * 109.46647 * 239.99721 * 2 1 3 25 25 H 1.08999 * 109.46724 * 119.99659 * 2 1 3 26 26 H 1.09002 * 109.47391 * 330.02613 * 7 6 4 27 27 H 1.09001 * 109.46813 * 210.02670 * 7 6 4 28 28 H 0.97002 * 119.99739 * 180.02562 * 11 10 8 29 29 H 1.08994 * 109.47225 * 59.99997 * 20 18 3 30 30 H 1.09003 * 109.46950 * 180.02562 * 20 18 3 31 31 H 1.09007 * 109.46887 * 300.00037 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2858 2.1392 1.0787 5 8 2.1504 1.7560 2.2241 6 7 2.7177 3.3621 0.7497 7 6 3.0818 4.3955 1.7222 8 6 4.5467 4.2773 2.0560 9 1 5.1465 3.5095 1.5901 10 6 5.1213 5.1500 2.9555 11 7 6.3997 5.0472 3.2464 12 14 4.0840 6.4785 3.7609 13 1 3.5003 5.9543 5.0218 14 1 4.9359 7.6569 4.0622 15 1 2.9914 6.8803 2.8390 16 6 2.7709 3.5275 -0.5867 17 8 3.1161 4.5220 -1.1882 18 6 2.3113 2.2112 -1.1813 19 1 1.4123 2.3571 -1.7800 20 6 3.4198 1.5764 -2.0236 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.4909 4.2656 2.6289 27 1 2.8842 5.3797 1.2975 28 1 6.8040 5.6609 3.8795 29 1 3.1026 0.5881 -2.3562 30 1 3.6218 2.2047 -2.8911 31 1 4.3249 1.4846 -1.4232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260309917.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:46 Heat of formation + Delta-G solvation = -41.723874 kcal Electronic energy + Delta-G solvation = -16137.758360 eV Core-core repulsion = 13420.432343 eV Total energy + Delta-G solvation = -2717.326017 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.78292 -38.00353 -36.16656 -35.04654 -32.90273 -31.96181 -29.83000 -28.15925 -24.72065 -23.72374 -22.39278 -20.96700 -19.56940 -17.30893 -16.89778 -16.24475 -15.78527 -15.32143 -14.86518 -14.27310 -13.85013 -13.80816 -13.61032 -13.02163 -12.61456 -12.48795 -12.46779 -11.97672 -11.95674 -11.76658 -11.28494 -11.12052 -10.67107 -10.37575 -10.11086 -9.65905 -9.50610 -8.85599 -8.65480 -8.55809 -6.14916 -4.16217 2.19885 2.62259 3.27227 3.32884 3.34384 3.47684 3.71413 4.34516 4.41413 4.76326 4.95153 5.04167 5.17269 5.21359 5.29480 5.50086 5.54412 5.69626 5.74087 6.04895 6.12593 6.15733 6.41837 6.65486 6.68687 6.92945 7.43514 7.84148 8.01130 8.34571 8.72565 8.84990 9.41787 10.98069 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.034548 B = 0.008814 C = 0.008026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.266969 B = 3175.997781 C = 3487.746550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.149 3.851 3 N -0.633 5.633 4 C 0.701 3.299 5 O -0.540 6.540 6 N -0.554 5.554 7 C 0.220 3.780 8 C -0.537 4.537 9 H 0.076 0.924 10 C 0.078 3.922 11 N -0.891 5.891 12 Si 0.876 3.124 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.264 1.264 16 C 0.523 3.477 17 O -0.474 6.474 18 C 0.090 3.910 19 H 0.115 0.885 20 C -0.147 4.147 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.267 0.733 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -8.739 -9.834 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.028 3.972 3 N -0.374 5.374 4 C 0.403 3.597 5 O -0.413 6.413 6 N -0.297 5.297 7 C 0.101 3.899 8 C -0.575 4.575 9 H 0.094 0.906 10 C -0.126 4.126 11 N -0.528 5.528 12 Si 0.702 3.298 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.188 1.188 16 C 0.309 3.691 17 O -0.345 6.345 18 C -0.018 4.018 19 H 0.133 0.867 20 C -0.205 4.205 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.627 -8.370 -9.331 16.433 hybrid contribution -0.340 0.697 0.504 0.925 sum -10.967 -7.673 -8.827 16.033 Atomic orbital electron populations 1.22219 0.95983 1.02200 1.02628 1.21170 0.93834 0.78814 1.03392 1.47804 1.70173 1.14088 1.05324 1.15937 0.77818 0.80841 0.85083 1.90919 1.57236 1.74356 1.18796 1.46495 1.59124 1.14783 1.09250 1.19928 0.98059 0.84938 0.86967 1.21118 0.91762 1.17962 1.26624 0.90557 1.24785 0.94968 0.97099 0.95721 1.69878 1.10947 1.37834 1.34165 0.86850 0.80705 0.81740 0.80513 1.19649 1.20637 1.18830 1.20647 0.76747 0.88900 0.82813 1.90743 1.44692 1.32623 1.66410 1.22041 1.00788 0.89559 0.89400 0.86708 1.21881 0.97618 1.01112 0.99892 0.92518 0.91347 0.91990 0.90056 0.89506 0.93565 0.93301 0.92286 0.91002 0.90105 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.24 37.16 0.38 -1.24 16 2 C 0.15 1.65 6.73 -4.04 -0.03 1.62 16 3 N -0.63 -9.63 2.74 -172.40 -0.47 -10.10 16 4 C 0.70 14.58 8.31 -88.02 -0.73 13.85 16 5 O -0.54 -12.98 17.15 5.33 0.09 -12.89 16 6 N -0.55 -12.38 2.59 -122.02 -0.32 -12.69 16 7 C 0.22 5.62 4.52 -5.19 -0.02 5.59 16 8 C -0.54 -15.88 9.94 -34.44 -0.34 -16.22 16 9 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 10 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 11 N -0.89 -27.66 13.96 55.43 0.77 -26.88 16 12 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 16 C 0.52 10.26 7.67 -10.56 -0.08 10.18 16 17 O -0.47 -10.46 17.75 5.59 0.10 -10.36 16 18 C 0.09 1.24 4.03 -68.20 -0.27 0.97 16 19 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 20 C -0.15 -1.68 9.46 37.16 0.35 -1.33 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.65 7.35 -51.93 -0.38 0.27 16 25 H 0.09 1.05 8.03 -51.93 -0.42 0.63 16 26 H 0.05 1.18 7.29 -51.93 -0.38 0.80 16 27 H 0.05 1.23 7.06 -51.93 -0.37 0.87 16 28 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.07 0.60 7.42 -51.93 -0.39 0.22 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 271.15 15.07 4.09 4.09 Total: -1.00 -34.97 271.15 -5.31 -40.28 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -4.06 Total: -4.02 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: -0.85 Total: 15.62 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.01 Total: -49.68 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.19 Total: -23.25 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.97 -5.31 -40.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309917.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.447 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds