Wall clock time and date at job start Mon Mar 30 2020 20:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 119.99568 * 2 1 4 4 H 1.48502 * 109.47259 * 269.99849 * 3 2 1 5 5 H 1.48500 * 109.47566 * 29.99434 * 3 2 1 6 6 H 1.48496 * 109.47268 * 150.00052 * 3 2 1 7 7 C 1.38942 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00094 * 359.97438 * 7 2 1 9 9 N 1.37103 * 120.00207 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00062 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00326 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99549 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46661 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46897 * 179.97438 * 14 13 12 16 16 C 1.54266 * 110.03792 * 292.90591 * 15 14 13 17 17 C 1.54961 * 104.16181 * 217.14014 * 16 15 14 18 18 C 1.54885 * 102.77932 * 37.88909 * 17 16 15 19 19 C 1.53875 * 110.03091 * 175.69181 * 15 14 13 20 20 H 0.96997 * 120.00153 * 0.02562 * 1 2 3 21 21 H 0.97003 * 119.99274 * 359.97438 * 9 7 2 22 22 H 1.08995 * 109.47155 * 60.00029 * 12 10 9 23 23 H 1.08997 * 109.47111 * 299.99951 * 12 10 9 24 24 H 1.00902 * 111.00533 * 56.04452 * 13 12 10 25 25 H 1.09000 * 109.47033 * 300.00113 * 14 13 12 26 26 H 1.09001 * 109.46544 * 60.00058 * 14 13 12 27 27 H 1.08999 * 110.01809 * 54.30243 * 15 14 13 28 28 H 1.09000 * 110.48113 * 335.78905 * 16 15 14 29 29 H 1.09008 * 110.48152 * 98.42758 * 16 15 14 30 30 H 1.08994 * 110.72031 * 279.57006 * 17 16 15 31 31 H 1.09004 * 110.91930 * 156.30021 * 17 16 15 32 32 H 1.08998 * 110.48384 * 203.40508 * 18 17 16 33 33 H 1.09003 * 110.59736 * 80.81343 * 18 17 16 34 34 H 1.09005 * 110.03670 * 238.57201 * 19 15 14 35 35 H 1.09003 * 110.03297 * 359.94934 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3800 -1.2032 0.0011 10 6 4.0539 -2.3704 0.0021 11 8 3.4475 -3.4208 0.0031 12 6 5.5609 -2.3702 0.0021 13 7 6.0506 -3.7552 0.0040 14 6 7.5191 -3.7943 0.0046 15 6 7.9905 -5.2499 0.0072 16 6 7.6161 -5.9244 1.3432 17 6 8.8177 -6.8541 1.6483 18 6 10.0297 -6.0144 1.1740 19 6 9.5244 -5.3074 -0.1007 20 1 -0.4850 0.8400 -0.0004 21 1 3.8649 -0.3631 0.0007 22 1 5.9242 -1.8556 0.8916 23 1 5.9242 -1.8572 -0.8883 24 1 5.6751 -4.2726 -0.7767 25 1 7.8964 -3.2914 -0.8858 26 1 7.8956 -3.2893 0.8942 27 1 7.5372 -5.7903 -0.8238 28 1 7.5027 -5.1774 2.1289 29 1 6.7008 -6.5061 1.2334 30 1 8.7429 -7.7804 1.0789 31 1 8.8867 -7.0632 2.7159 32 1 10.8749 -6.6621 0.9414 33 1 10.3086 -5.2818 1.9314 34 1 9.8156 -5.8765 -0.9836 35 1 9.9329 -4.2984 -0.1558 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037258564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:44 Heat of formation + Delta-G solvation = -52.612343 kcal Electronic energy + Delta-G solvation = -15310.458502 eV Core-core repulsion = 12728.493420 eV Total energy + Delta-G solvation = -2581.965082 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.77781 -38.13874 -35.04216 -33.83023 -31.64467 -30.07612 -28.69689 -26.68165 -24.23543 -22.66136 -20.69569 -19.85602 -19.24604 -18.24785 -16.26963 -15.87802 -15.45270 -14.93008 -14.78854 -14.08874 -13.69592 -13.62981 -13.34148 -13.09258 -12.52791 -12.08242 -11.78806 -11.70785 -11.22936 -11.16924 -11.05512 -10.99473 -10.74722 -10.63314 -10.57478 -10.40425 -9.95541 -9.55100 -8.54550 -8.16700 -8.06053 -6.29163 -3.80503 3.04359 3.08038 3.16231 3.77480 4.11002 4.14893 4.58243 4.60530 4.71307 4.95965 5.17017 5.23564 5.36833 5.42800 5.54242 5.58296 5.59922 5.69901 5.75983 5.80373 5.82446 5.86893 5.96266 5.99642 6.06669 6.23484 6.37103 6.46372 7.17963 7.60736 7.65666 8.16923 8.62366 8.97231 9.44809 9.85707 10.84092 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.061632 B = 0.004592 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.203446 B = 6095.866154 C = 6359.584289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.668 5.668 14 C 0.066 3.934 15 C -0.090 4.090 16 C -0.106 4.106 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.120 4.120 20 H 0.273 0.727 21 H 0.370 0.630 22 H 0.086 0.914 23 H 0.043 0.957 24 H 0.349 0.651 25 H 0.024 0.976 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.697 -5.744 0.388 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.300 5.300 14 C -0.063 4.063 15 C -0.109 4.109 16 C -0.144 4.144 17 C -0.167 4.167 18 C -0.161 4.161 19 C -0.158 4.158 20 H 0.084 0.916 21 H 0.203 0.797 22 H 0.104 0.896 23 H 0.061 0.939 24 H 0.169 0.831 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.010 -6.399 1.064 20.087 hybrid contribution 0.746 1.790 -0.925 2.148 sum 19.756 -4.609 0.139 20.287 Atomic orbital electron populations 1.69625 1.05636 1.27463 1.49536 1.25035 0.95495 0.97965 0.97696 0.86664 0.79807 0.84043 0.78834 1.19681 1.20173 1.19481 1.19441 0.79287 0.96636 1.47979 0.86301 1.42216 1.07519 1.06176 1.67244 1.19745 0.88267 0.84531 0.83826 1.90561 1.69474 1.30951 1.53602 1.21700 0.94906 0.90743 1.01136 1.60048 1.06274 1.12290 1.51415 1.22129 0.88224 0.95971 1.00020 1.21760 0.94660 0.95586 0.98901 1.22296 0.97391 0.98158 0.96542 1.22565 0.95246 0.98312 1.00570 1.22341 0.97689 0.98756 0.97356 1.22180 0.95119 1.00541 0.97961 0.91641 0.79704 0.89607 0.93926 0.83134 0.95801 0.91158 0.91167 0.91222 0.91336 0.91879 0.91890 0.92164 0.91803 0.92026 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.05 13.96 55.50 0.77 -25.28 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.57 27.74 -169.99 -4.71 14.85 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.47 6.52 56.52 0.37 -5.11 16 7 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 8 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 9 N -0.59 -14.37 5.09 -10.96 -0.06 -14.43 16 10 C 0.45 10.47 7.82 -10.98 -0.09 10.38 16 11 O -0.56 -15.46 15.78 5.55 0.09 -15.37 16 12 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 13 N -0.67 -10.66 5.93 -115.06 -0.68 -11.34 16 14 C 0.07 0.81 4.74 -3.82 -0.02 0.79 16 15 C -0.09 -0.99 3.09 -89.50 -0.28 -1.27 16 16 C -0.11 -1.22 6.18 -25.03 -0.15 -1.38 16 17 C -0.13 -1.22 6.91 -24.70 -0.17 -1.39 16 18 C -0.12 -1.06 6.83 -25.07 -0.17 -1.24 16 19 C -0.12 -1.09 6.46 -25.61 -0.17 -1.25 16 20 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 22 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 25 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.84 8.02 -51.93 -0.42 0.43 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 29 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 LS Contribution 287.85 15.07 4.34 4.34 Total: -1.00 -31.81 287.85 -7.14 -38.95 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.57 Total: 10.71 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.32 Total: -2.43 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.04 Total: -51.05 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.09 Total: -15.37 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.85 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.81 -7.14 -38.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037258564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.664 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds