Wall clock time and date at job start Mon Mar 30 2020 20:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47601 * 2 1 4 4 C 1.50692 * 109.53528 * 58.81317 * 3 2 1 5 5 O 1.21293 * 120.00220 * 245.25798 * 4 3 2 6 6 N 1.34783 * 119.99779 * 65.25974 * 4 3 2 7 7 C 1.37097 * 119.99609 * 184.95254 * 6 4 3 8 8 H 1.07999 * 120.00439 * 359.97438 * 7 6 4 9 9 C 1.38954 * 119.99740 * 180.02562 * 7 6 4 10 10 N 1.31413 * 119.99987 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99803 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47099 * 59.99884 * 11 9 7 13 13 H 1.48501 * 109.46889 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47092 * 299.99312 * 11 9 7 15 15 C 1.53114 * 109.50517 * 178.91731 * 3 2 1 16 16 C 1.53118 * 109.16382 * 177.59316 * 15 3 2 17 17 C 1.53037 * 109.27643 * 302.34633 * 16 15 3 18 18 N 1.46846 * 109.52430 * 59.17338 * 17 16 15 19 19 C 1.46838 * 111.20166 * 298.25867 * 18 17 16 20 20 H 1.09003 * 109.47403 * 185.51997 * 1 2 3 21 21 H 1.09011 * 109.47186 * 305.51827 * 1 2 3 22 22 H 1.09002 * 109.47167 * 65.51699 * 1 2 3 23 23 H 1.08999 * 109.47054 * 239.99586 * 2 1 3 24 24 H 1.09005 * 109.47363 * 120.00098 * 2 1 3 25 25 H 0.96994 * 120.00048 * 4.94930 * 6 4 3 26 26 H 0.96993 * 119.99735 * 180.02562 * 10 9 7 27 27 H 1.09006 * 109.52105 * 297.49499 * 15 3 2 28 28 H 1.08999 * 109.52522 * 57.62147 * 15 3 2 29 29 H 1.09000 * 109.50137 * 62.28407 * 16 15 3 30 30 H 1.08996 * 109.50798 * 182.36095 * 16 15 3 31 31 H 1.09003 * 109.46161 * 179.19435 * 17 16 15 32 32 H 1.08998 * 109.45963 * 299.15607 * 17 16 15 33 33 H 1.00901 * 110.99709 * 174.16173 * 18 17 16 34 34 H 1.09001 * 109.46526 * 301.72992 * 19 18 17 35 35 H 1.09000 * 109.46698 * 181.75483 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5147 2.1627 1.2149 5 8 0.7438 3.0899 1.0842 6 7 1.9016 1.7766 2.4470 7 6 1.3471 2.3636 3.5549 8 1 0.6006 3.1357 3.4405 9 6 1.7463 1.9659 4.8250 10 7 2.6549 1.0268 4.9642 11 14 0.9913 2.7662 6.3347 12 1 -0.4765 2.5405 6.3328 13 1 1.5820 2.1688 7.5592 14 1 1.2680 4.2250 6.3121 15 6 3.5709 1.4433 0.0273 16 6 4.0739 2.8882 -0.0336 17 6 3.5317 3.5591 -1.2978 18 7 2.0637 3.5333 -1.2759 19 6 1.5568 2.1552 -1.2652 20 1 -0.3634 -1.0229 0.0989 21 1 -0.3634 0.5971 0.8365 22 1 -0.3633 0.4259 -0.9353 23 1 1.8932 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 2.5722 1.0834 2.5497 26 1 2.9333 0.7489 5.8508 27 1 3.9191 0.9750 0.9479 28 1 3.9509 0.8879 -0.8302 29 1 3.7260 3.4320 0.8447 30 1 5.1636 2.8936 -0.0568 31 1 3.8764 4.5925 -1.3369 32 1 3.8914 3.0231 -2.1761 33 1 1.6814 4.0531 -2.0517 34 1 1.9257 1.6257 -2.1436 35 1 0.4670 2.1688 -1.2806 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062859607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:46 Heat of formation + Delta-G solvation = -51.041132 kcal Electronic energy + Delta-G solvation = -16865.884674 eV Core-core repulsion = 14283.987725 eV Total energy + Delta-G solvation = -2581.896949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.72052 -36.55222 -33.84601 -33.73674 -31.62323 -30.70380 -28.73335 -25.10301 -23.65580 -23.37028 -21.39464 -20.30775 -18.03751 -17.48533 -16.25651 -15.32910 -14.69789 -14.38434 -14.11249 -13.81462 -13.49722 -13.36264 -12.83140 -12.53940 -12.25931 -12.15150 -11.63102 -11.47414 -11.23173 -10.97357 -10.88616 -10.61079 -10.49356 -10.34704 -10.12640 -9.84588 -9.72230 -9.32248 -8.07494 -7.83914 -7.75349 -6.27167 -3.66391 3.28251 3.32424 3.37378 4.14283 4.28138 4.58782 4.97491 5.08226 5.21043 5.41543 5.44062 5.46071 5.66196 5.73817 5.77812 5.88521 5.90154 6.00679 6.06957 6.19637 6.24040 6.34494 6.39211 6.55119 6.60071 6.68417 6.76823 6.88287 7.50477 7.68071 7.81787 8.22712 8.81032 9.35358 9.75153 10.29277 10.91300 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031598 B = 0.009074 C = 0.008484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.917821 B = 3084.875707 C = 3299.578029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.072 4.072 4 C 0.474 3.526 5 O -0.569 6.569 6 N -0.573 5.573 7 C -0.292 4.292 8 H 0.099 0.901 9 C 0.019 3.981 10 N -0.907 5.907 11 Si 0.926 3.074 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.275 1.275 15 C -0.109 4.109 16 C -0.120 4.120 17 C 0.062 3.938 18 N -0.669 5.669 19 C 0.092 3.908 20 H 0.049 0.951 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.389 0.611 26 H 0.269 0.731 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.019 0.981 33 H 0.335 0.665 34 H 0.019 0.981 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -1.774 -10.803 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.076 4.076 4 C 0.259 3.741 5 O -0.452 6.452 6 N -0.210 5.210 7 C -0.422 4.422 8 H 0.117 0.883 9 C -0.181 4.181 10 N -0.549 5.549 11 Si 0.753 3.247 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 C -0.147 4.147 16 C -0.158 4.158 17 C -0.067 4.067 18 N -0.299 5.299 19 C -0.037 4.037 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.222 0.778 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.152 0.848 34 H 0.038 0.962 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.680 -1.149 -10.021 10.225 hybrid contribution 0.340 -0.375 0.009 0.506 sum 2.020 -1.524 -10.012 10.326 Atomic orbital electron populations 1.21797 0.95550 1.01148 1.02406 1.21512 0.96555 0.94713 1.01894 1.20872 0.95463 0.95295 0.95929 1.19353 0.85153 0.86082 0.83477 1.90518 1.38610 1.30255 1.85768 1.41849 1.38397 1.36558 1.04199 1.19618 1.20374 1.18696 0.83487 0.88293 1.25176 0.97021 0.96998 0.98929 1.69603 1.31196 1.29962 1.24182 0.86000 0.79078 0.79224 0.80372 1.20121 1.21159 1.20089 1.21632 0.94152 0.97013 1.01871 1.21590 0.99010 0.96059 0.99144 1.21882 0.88664 0.99836 0.96343 1.60014 1.06234 1.14138 1.49532 1.21653 1.00221 0.87848 0.94017 0.93236 0.91527 0.93042 0.92286 0.91235 0.77769 0.92139 0.91228 0.92420 0.90299 0.92053 0.91426 0.96300 0.84758 0.96249 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.27 37.15 0.34 -2.15 16 2 C -0.11 -1.77 4.96 -26.74 -0.13 -1.90 16 3 C -0.07 -1.31 0.43 -155.58 -0.07 -1.38 16 4 C 0.47 11.27 3.70 -10.99 -0.04 11.23 16 5 O -0.57 -15.55 14.94 5.55 0.08 -15.47 16 6 N -0.57 -14.75 5.15 -10.96 -0.06 -14.80 16 7 C -0.29 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.96 7.17 -52.49 -0.38 2.58 16 9 C 0.02 0.53 5.50 -17.47 -0.10 0.43 16 10 N -0.91 -25.23 13.05 55.50 0.72 -24.50 16 11 Si 0.93 21.67 29.55 -169.99 -5.02 16.64 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C -0.11 -1.81 4.68 -26.61 -0.12 -1.93 16 16 C -0.12 -2.01 5.84 -26.65 -0.16 -2.17 16 17 C 0.06 0.94 6.55 -3.83 -0.03 0.91 16 18 N -0.67 -11.38 5.84 -113.82 -0.66 -12.04 16 19 C 0.09 1.55 4.46 -3.84 -0.02 1.53 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.07 1.33 6.99 -51.92 -0.36 0.97 16 22 H 0.05 0.77 6.78 -51.93 -0.35 0.42 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.39 9.79 6.85 -40.82 -0.28 9.51 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.07 1.21 7.14 -51.93 -0.37 0.84 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.63 7.35 -51.93 -0.38 1.25 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.33 4.82 8.90 -39.29 -0.35 4.47 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 1.41 6.51 -51.93 -0.34 1.07 16 LS Contribution 276.07 15.07 4.16 4.16 Total: -1.00 -31.10 276.07 -6.56 -37.66 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.33 Total: 12.21 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.46 Total: -3.86 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.00 Total: -51.35 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.08 Total: -15.47 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.10 -6.56 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062859607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.380 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds