Wall clock time and date at job start Mon Mar 30 2020 20:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46413 * 2 1 4 4 C 1.53045 * 109.45659 * 119.97579 * 2 1 3 5 5 C 1.53122 * 109.27506 * 179.19697 * 4 2 1 6 6 C 1.53124 * 109.21037 * 302.31072 * 5 4 2 7 7 H 1.08998 * 109.49918 * 177.62629 * 6 5 4 8 8 C 1.50694 * 109.50278 * 297.74703 * 6 5 4 9 9 N 1.34778 * 120.00390 * 300.00064 * 8 6 5 10 10 O 1.21284 * 119.99903 * 120.00439 * 8 6 5 11 11 C 1.53171 * 109.20700 * 57.62874 * 6 5 4 12 12 N 1.46846 * 109.46350 * 240.02501 * 2 1 3 13 13 C 1.46900 * 110.99667 * 54.15082 * 12 2 1 14 14 C 1.50698 * 109.46814 * 191.44227 * 13 12 2 15 15 H 1.08005 * 120.00407 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00056 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99857 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00164 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47123 * 60.00521 * 18 16 14 20 20 H 1.48502 * 109.47051 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47064 * 300.00390 * 18 16 14 22 22 H 1.08999 * 109.47340 * 293.07227 * 1 2 3 23 23 H 1.09002 * 109.46413 * 53.06559 * 1 2 3 24 24 H 1.08995 * 109.47174 * 173.06406 * 1 2 3 25 25 H 1.08997 * 109.50481 * 59.25652 * 4 2 1 26 26 H 1.09001 * 109.49899 * 299.13191 * 4 2 1 27 27 H 1.08997 * 109.52462 * 62.24795 * 5 4 2 28 28 H 1.08997 * 109.52393 * 182.37808 * 5 4 2 29 29 H 0.97004 * 119.99670 * 359.97438 * 9 8 6 30 30 H 0.96996 * 119.99921 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.44422 * 180.83227 * 11 6 5 32 32 H 1.09000 * 109.44942 * 60.88181 * 11 6 5 33 33 H 1.09000 * 109.47031 * 311.44042 * 13 12 2 34 34 H 1.08996 * 109.47490 * 71.44546 * 13 12 2 35 35 H 0.97007 * 120.00340 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 3.5709 -0.7361 1.2357 6 6 4.0561 -1.4194 -0.0458 7 1 5.1452 -1.3953 -0.0811 8 6 3.5827 -2.8500 -0.0634 9 7 3.9564 -3.6956 0.9173 10 8 2.8656 -3.2405 -0.9602 11 6 3.4865 -0.6777 -1.2590 12 7 2.0193 -0.6917 -1.1993 13 6 1.4374 -0.1105 -2.4165 14 6 1.7318 -1.0069 -3.5915 15 1 2.2945 -1.9176 -3.4484 16 6 1.2819 -0.6650 -4.8492 17 7 0.5963 0.4436 -5.0234 18 14 1.6474 -1.7759 -6.3059 19 1 1.0568 -3.1171 -6.0661 20 1 1.0590 -1.1883 -7.5363 21 1 3.1172 -1.9049 -6.4735 22 1 -0.3634 0.4027 0.9454 23 1 -0.3632 0.6176 -0.8215 24 1 -0.3633 -1.0201 -0.1241 25 1 1.6658 -1.7448 1.2576 26 1 1.6894 -0.1982 2.1400 27 1 3.9456 0.2869 1.2674 28 1 3.9379 -1.2855 2.1027 29 1 4.5303 -3.3834 1.6343 30 1 3.6520 -4.6165 0.9058 31 1 3.8176 -1.1699 -2.1735 32 1 3.8404 0.3532 -1.2530 33 1 0.3586 -0.0150 -2.2936 34 1 1.8716 0.8737 -2.5926 35 1 0.2794 0.6840 -5.9082 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042428708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:52 Heat of formation + Delta-G solvation = -69.784239 kcal Electronic energy + Delta-G solvation = -16729.735604 eV Core-core repulsion = 14147.025893 eV Total energy + Delta-G solvation = -2582.709711 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13322 -38.86260 -35.52297 -34.54222 -33.52002 -33.10444 -29.00486 -28.05704 -25.52574 -23.89913 -22.99198 -21.39297 -19.95919 -18.44086 -17.94019 -17.25242 -16.97593 -16.31057 -15.96844 -15.35550 -15.09948 -14.75971 -14.59833 -14.06983 -13.71907 -13.47728 -13.10634 -12.87205 -12.72713 -12.64743 -12.54425 -12.40933 -12.04713 -11.72353 -11.56400 -11.08033 -10.89536 -10.54582 -10.51273 -10.35249 -8.75564 -8.16750 -6.23955 1.35358 1.39942 1.48337 2.02698 2.41139 2.83220 3.13641 3.36309 3.80586 3.95154 4.07070 4.12124 4.41226 4.47889 4.53210 4.73291 4.78224 4.85112 4.90732 5.05647 5.10227 5.11175 5.19075 5.25245 5.33086 5.42927 5.51830 5.73371 6.15726 6.17960 6.49724 6.77442 6.85261 6.94654 7.44092 7.73393 8.93501 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.029133 B = 0.009535 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.863563 B = 2935.725741 C = 3532.543059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.067 3.933 3 H 0.024 0.976 4 C -0.105 4.105 5 C -0.101 4.101 6 C -0.103 4.103 7 H 0.126 0.874 8 C 0.515 3.485 9 N -0.844 5.844 10 O -0.563 6.563 11 C 0.080 3.920 12 N -0.524 5.524 13 C 0.208 3.792 14 C -0.511 4.511 15 H 0.053 0.947 16 C -0.001 4.001 17 N -0.936 5.936 18 Si 0.963 3.037 19 H -0.276 1.276 20 H -0.277 1.277 21 H -0.269 1.269 22 H 0.084 0.916 23 H 0.031 0.969 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.414 0.586 30 H 0.401 0.599 31 H 0.048 0.952 32 H 0.024 0.976 33 H 0.014 0.986 34 H -0.046 1.046 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.701 -3.304 17.037 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.041 4.041 3 H 0.042 0.958 4 C -0.143 4.143 5 C -0.139 4.139 6 C -0.124 4.124 7 H 0.144 0.856 8 C 0.300 3.700 9 N -0.410 5.410 10 O -0.439 6.439 11 C -0.049 4.049 12 N -0.249 5.249 13 C 0.082 3.918 14 C -0.549 4.549 15 H 0.071 0.929 16 C -0.198 4.198 17 N -0.578 5.578 18 Si 0.788 3.212 19 H -0.202 1.202 20 H -0.202 1.202 21 H -0.194 1.194 22 H 0.103 0.897 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.245 0.755 30 H 0.231 0.769 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.032 0.968 34 H -0.028 1.028 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.008 -3.753 16.284 18.531 hybrid contribution 0.132 0.309 -1.139 1.188 sum 8.140 -3.444 15.145 17.536 Atomic orbital electron populations 1.21802 0.95201 1.01049 1.01347 1.21792 0.95461 0.94901 0.91956 0.95791 1.21636 0.96353 1.00359 0.95970 1.21612 0.94988 1.01922 0.95378 1.21528 1.02301 0.91524 0.97075 0.85578 1.20734 0.79348 0.88553 0.81371 1.43677 1.54987 1.14212 1.28087 1.90862 1.37110 1.78344 1.37590 1.21713 0.88484 0.96947 0.97717 1.61931 1.06503 1.54587 1.01858 1.19380 0.93992 0.91044 0.87420 1.21462 1.33611 1.07072 0.92758 0.92906 1.25848 0.95306 0.96855 1.01791 1.70074 1.38849 1.25238 1.23595 0.85532 0.78694 0.78766 0.78159 1.20179 1.20202 1.19416 0.89689 0.94981 0.93864 0.92966 0.88805 0.89865 0.87569 0.75454 0.76861 0.93387 0.95749 0.96836 1.02843 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.55 71.98 0.62 -4.47 16 2 C 0.07 2.51 2.44 44.94 0.11 2.62 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.11 -2.80 5.12 30.65 0.16 -2.64 16 5 C -0.10 -2.08 5.43 30.68 0.17 -1.91 16 6 C -0.10 -2.84 3.04 -11.44 -0.03 -2.88 16 7 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 8 C 0.52 16.21 6.14 87.65 0.54 16.75 16 9 N -0.84 -16.01 8.76 -173.53 -1.52 -17.53 16 10 O -0.56 -25.83 16.08 -3.04 -0.05 -25.88 16 11 C 0.08 3.29 4.29 86.37 0.37 3.66 16 12 N -0.52 -24.53 3.34 -875.36 -2.92 -27.45 16 13 C 0.21 12.04 4.46 85.56 0.38 12.42 16 14 C -0.51 -32.04 8.44 25.60 0.22 -31.82 16 15 H 0.05 3.43 7.22 -2.91 -0.02 3.41 16 16 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 17 N -0.94 -59.79 13.29 21.45 0.28 -59.50 16 18 Si 0.96 48.54 29.54 68.60 2.03 50.57 16 19 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 22 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.03 1.35 6.50 -2.39 -0.02 1.33 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.05 1.57 7.35 -2.39 -0.02 1.55 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.11 1.29 7.51 -2.39 -0.02 1.27 16 29 H 0.41 4.23 8.22 -92.71 -0.76 3.47 16 30 H 0.40 7.20 8.93 -92.71 -0.83 6.37 16 31 H 0.05 2.32 6.74 -2.39 -0.02 2.31 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.01 0.84 5.74 -2.39 -0.01 0.83 16 34 H -0.05 -2.86 8.11 -2.39 -0.02 -2.88 16 35 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 Total: -1.00 -81.45 277.31 0.30 -81.14 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -0.50 Total: 6.53 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 2.98 Total: -7.87 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -4.16 Total: -104.49 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -81.45 0.30 -81.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042428708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.356 kcal (2) G-P(sol) polarization free energy of solvation -81.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds