Wall clock time and date at job start Mon Mar 30 2020 20:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 120.00271 * 2 1 4 4 O 1.21287 * 119.99358 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00328 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47173 * 59.99565 * 5 3 2 7 7 C 1.53003 * 109.46969 * 299.99926 * 5 3 2 8 8 N 1.46903 * 109.47144 * 180.02562 * 5 3 2 9 9 C 1.48725 * 111.01249 * 174.46408 * 8 5 3 10 10 C 1.54378 * 104.51408 * 158.96657 * 9 8 5 11 11 C 1.54260 * 105.15099 * 336.26277 * 10 9 8 12 12 H 1.09002 * 110.31794 * 118.84625 * 11 10 9 13 13 C 1.50698 * 110.32724 * 240.95405 * 11 10 9 14 14 H 1.07998 * 120.00044 * 118.54724 * 13 11 10 15 15 C 1.37878 * 119.99796 * 298.54540 * 13 11 10 16 16 N 1.31508 * 119.99961 * 179.97438 * 15 13 11 17 17 Si 1.86807 * 120.00207 * 0.02562 * 15 13 11 18 18 H 1.48503 * 109.47150 * 89.99596 * 17 15 13 19 19 H 1.48497 * 109.47005 * 209.99854 * 17 15 13 20 20 H 1.48499 * 109.47052 * 329.99905 * 17 15 13 21 21 C 1.48560 * 110.99952 * 289.96761 * 8 5 3 22 22 H 1.08997 * 109.47195 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47232 * 300.00445 * 1 2 3 24 24 H 1.09010 * 109.46810 * 60.00102 * 1 2 3 25 25 H 0.96999 * 120.00247 * 180.02562 * 2 1 3 26 26 H 1.09006 * 109.47022 * 174.18528 * 7 5 3 27 27 H 1.08995 * 109.47573 * 294.18786 * 7 5 3 28 28 H 1.09003 * 109.46873 * 54.18967 * 7 5 3 29 29 H 1.08994 * 110.39261 * 40.24270 * 9 8 5 30 30 H 1.09003 * 110.50521 * 277.74687 * 9 8 5 31 31 H 1.09007 * 110.32266 * 217.31946 * 10 9 8 32 32 H 1.08999 * 110.32472 * 95.21705 * 10 9 8 33 33 H 0.97002 * 120.00078 * 180.02562 * 16 15 13 34 34 H 1.09006 * 110.40785 * 82.18044 * 21 8 5 35 35 H 1.09001 * 110.40997 * 319.74553 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0096 0.6531 -0.8891 7 6 4.1554 0.4463 1.2502 8 7 4.1355 2.5522 0.0011 9 6 5.6161 2.5944 0.1356 10 6 6.0149 3.9819 -0.4112 11 6 4.8652 4.3887 -1.3558 12 1 4.3908 5.3041 -1.0022 13 6 5.3819 4.5762 -2.7590 14 1 5.0067 3.9565 -3.5599 15 6 6.3337 5.5389 -3.0201 16 7 6.7851 5.7023 -4.2445 17 14 6.9833 6.6104 -1.6346 18 1 8.1683 5.9600 -1.0198 19 1 7.3721 7.9375 -2.1757 20 1 5.9258 6.7853 -0.6068 21 6 3.8670 3.2123 -1.3024 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.9500 -0.8400 -0.0004 26 1 5.2404 0.3552 1.2001 27 1 3.8792 1.0168 2.1369 28 1 3.7095 -0.5470 1.3038 29 1 6.0742 1.8049 -0.4601 30 1 5.9073 2.5000 1.1818 31 1 6.9528 3.9161 -0.9629 32 1 6.1061 4.6986 0.4049 33 1 7.4550 6.3793 -4.4282 34 1 2.8419 3.5816 -1.3375 35 1 4.0508 2.5201 -2.1241 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307471667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:01 Heat of formation + Delta-G solvation = -26.798852 kcal Electronic energy + Delta-G solvation = -16245.743150 eV Core-core repulsion = 13664.897425 eV Total energy + Delta-G solvation = -2580.845725 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86732 -37.80068 -34.50730 -33.81939 -31.93160 -28.98120 -28.42689 -26.82551 -24.20312 -23.38399 -20.77319 -19.83954 -19.27471 -17.19232 -16.55729 -16.12397 -15.33100 -14.98735 -14.70920 -13.88709 -13.79500 -13.63006 -12.76141 -12.50770 -12.38925 -12.29421 -12.21735 -11.98601 -11.70361 -11.22164 -10.91913 -10.49318 -10.44652 -10.10845 -9.74998 -9.50961 -9.40346 -9.08719 -8.90493 -8.51616 -7.89323 -6.03511 -4.02239 2.84371 3.19882 3.32874 3.42517 3.48227 4.46784 4.48041 4.80167 5.07608 5.12970 5.27069 5.29905 5.43939 5.51663 5.61873 5.70343 5.75045 5.89173 6.05532 6.08794 6.29334 6.35262 6.41559 6.70691 6.82671 6.90852 7.11414 7.35048 7.38796 7.57873 7.67093 7.88505 8.41400 8.57022 8.99336 9.59425 11.09550 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045047 B = 0.007011 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.429320 B = 3992.740488 C = 4272.498041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.744 5.744 3 C 0.518 3.482 4 O -0.512 6.512 5 C 0.052 3.948 6 H 0.066 0.934 7 C -0.141 4.141 8 N -0.496 5.496 9 C 0.042 3.958 10 C -0.134 4.134 11 C 0.013 3.987 12 H 0.037 0.963 13 C -0.510 4.510 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.903 5.903 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.294 1.294 20 H -0.262 1.262 21 C 0.052 3.948 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.398 0.602 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.263 0.737 34 H 0.078 0.922 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -13.654 10.450 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.398 5.398 3 C 0.303 3.697 4 O -0.385 6.385 5 C -0.061 4.061 6 H 0.083 0.917 7 C -0.198 4.198 8 N -0.221 5.221 9 C -0.085 4.085 10 C -0.172 4.172 11 C -0.007 4.007 12 H 0.055 0.945 13 C -0.549 4.549 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.542 5.542 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.220 1.220 20 H -0.186 1.186 21 C -0.075 4.075 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.231 0.769 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.050 -12.489 10.782 17.942 hybrid contribution 1.049 -0.346 -0.109 1.110 sum -6.002 -12.835 10.672 17.738 Atomic orbital electron populations 1.21468 0.79953 1.01710 1.02268 1.45828 1.07474 1.08745 1.77724 1.20639 0.89954 0.83458 0.75627 1.90706 1.69960 1.31060 1.46815 1.21744 0.91701 0.93206 0.99421 0.91684 1.21820 1.01845 0.99027 0.97154 1.65368 1.11569 1.11021 1.34106 1.23056 0.87475 0.98391 0.99591 1.22813 1.01184 0.94522 0.98706 1.19874 0.91324 0.94011 0.95448 0.94522 1.21067 1.22432 1.19079 0.92278 0.91021 1.24986 0.96118 0.96625 0.95366 1.69909 1.30448 1.34352 1.19476 0.86899 0.79768 0.79686 0.82893 1.20304 1.22048 1.18618 1.23183 1.00789 0.96474 0.87011 0.91029 0.92438 0.92373 0.76851 0.91344 0.91241 0.92296 0.94226 0.91361 0.91016 0.93371 0.92735 0.90401 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.70 59.85 0.64 1.49 16 2 N -0.74 -8.11 5.57 -67.08 -0.37 -8.49 16 3 C 0.52 8.07 6.96 -10.99 -0.08 8.00 16 4 O -0.51 -10.32 14.85 5.55 0.08 -10.24 16 5 C 0.05 0.78 2.31 -68.87 -0.16 0.62 16 6 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 7 C -0.14 -1.58 8.69 37.16 0.32 -1.26 16 8 N -0.50 -9.48 4.89 -223.26 -1.09 -10.57 16 9 C 0.04 0.77 5.15 -2.09 -0.01 0.76 16 10 C -0.13 -2.95 4.62 -25.35 -0.12 -3.07 16 11 C 0.01 0.32 2.51 -90.39 -0.23 0.10 16 12 H 0.04 0.96 7.28 -51.93 -0.38 0.58 16 13 C -0.51 -14.66 8.96 -34.44 -0.31 -14.97 16 14 H 0.07 2.22 7.83 -52.49 -0.41 1.81 16 15 C 0.07 2.06 5.34 -17.82 -0.10 1.96 16 16 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 17 Si 0.88 22.16 24.63 -169.99 -4.19 17.97 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.26 -6.45 6.48 56.52 0.37 -6.08 16 21 C 0.05 1.17 5.34 -2.19 -0.01 1.15 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 25 H 0.40 3.01 8.18 -40.82 -0.33 2.68 16 26 H 0.07 0.73 7.17 -51.93 -0.37 0.35 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.48 7.41 -51.93 -0.38 0.10 16 29 H 0.04 0.69 8.00 -51.93 -0.42 0.27 16 30 H 0.07 1.08 7.79 -51.93 -0.40 0.68 16 31 H 0.07 1.66 6.47 -51.92 -0.34 1.33 16 32 H 0.05 1.02 7.46 -51.93 -0.39 0.64 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.08 1.83 6.92 -51.93 -0.36 1.47 16 35 H 0.04 0.83 7.39 -51.93 -0.38 0.44 16 LS Contribution 275.82 15.07 4.16 4.16 Total: -1.00 -33.90 275.82 -6.12 -40.01 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.44 Total: -0.43 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.04 Total: -5.21 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.69 Total: -46.25 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.19 Total: 17.97 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.90 -6.12 -40.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307471667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.216 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds