Wall clock time and date at job start Mon Mar 30 2020 20:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00219 * 2 1 4 4 C 1.50699 * 112.84625 * 301.23659 * 3 2 1 5 5 O 1.21273 * 119.99936 * 132.38811 * 4 3 2 6 6 N 1.34785 * 119.99937 * 312.38317 * 4 3 2 7 7 C 1.46497 * 119.99702 * 185.06577 * 6 4 3 8 8 H 1.08996 * 109.47354 * 35.00901 * 7 6 4 9 9 C 1.52997 * 109.47320 * 275.00170 * 7 6 4 10 10 C 1.50702 * 109.46816 * 155.00287 * 7 6 4 11 11 H 1.08002 * 120.00311 * 35.06100 * 10 7 6 12 12 C 1.37874 * 119.99904 * 215.05755 * 10 7 6 13 13 N 1.31525 * 119.99906 * 184.25448 * 12 10 7 14 14 Si 1.86804 * 120.00242 * 4.25836 * 12 10 7 15 15 H 1.48491 * 109.47206 * 87.07402 * 14 12 10 16 16 H 1.48498 * 109.47062 * 207.07445 * 14 12 10 17 17 H 1.48501 * 109.46633 * 327.07165 * 14 12 10 18 18 C 1.53781 * 113.69282 * 72.50406 * 3 2 1 19 19 C 1.53786 * 87.08097 * 89.12752 * 18 3 2 20 20 C 1.53780 * 113.61330 * 170.04407 * 3 2 1 21 21 H 1.08995 * 109.47450 * 185.69776 * 1 2 3 22 22 H 1.09004 * 109.47151 * 305.70181 * 1 2 3 23 23 H 1.09004 * 109.46930 * 65.69499 * 1 2 3 24 24 H 1.00899 * 111.00036 * 236.04108 * 2 1 3 25 25 H 0.96995 * 119.99896 * 5.06701 * 6 4 3 26 26 H 1.09003 * 109.46750 * 295.34364 * 9 7 6 27 27 H 1.08998 * 109.47108 * 55.34197 * 9 7 6 28 28 H 1.09001 * 109.47234 * 175.34356 * 9 7 6 29 29 H 0.96999 * 119.99772 * 180.02562 * 13 12 10 30 30 H 1.08997 * 113.61177 * 203.67334 * 18 3 2 31 31 H 1.09001 * 113.61097 * 334.58068 * 18 3 2 32 32 H 1.08996 * 113.61308 * 270.88759 * 19 18 3 33 33 H 1.08995 * 113.68568 * 139.98778 * 19 18 3 34 34 H 1.09000 * 113.61631 * 25.34148 * 20 3 2 35 35 H 1.09004 * 113.61407 * 156.16795 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5328 2.1758 -1.1874 5 8 1.0944 3.2952 -1.0279 6 7 1.6064 1.6511 -2.4268 7 6 1.2617 2.4709 -3.5909 8 1 1.5697 3.5013 -3.4137 9 6 -0.2504 2.4226 -3.8191 10 6 1.9708 1.9372 -4.8088 11 1 2.1252 0.8742 -4.9214 12 6 2.4225 2.8059 -5.7795 13 7 2.9662 2.3360 -6.8811 14 14 2.2622 4.6503 -5.5302 15 1 3.4473 5.1547 -4.7911 16 1 2.1797 5.3231 -6.8515 17 1 1.0322 4.9392 -4.7499 18 6 1.8217 2.1000 1.3430 19 6 3.1876 1.5190 1.7453 20 6 3.5118 1.4491 0.2436 21 1 -0.3634 -1.0225 0.1020 22 1 -0.3634 0.5997 0.8346 23 1 -0.3633 0.4230 -0.9366 24 1 1.8305 -0.5262 -0.7813 25 1 1.8875 0.7307 -2.5479 26 1 -0.5464 1.4060 -4.0779 27 1 -0.7652 2.7304 -2.9090 28 1 -0.5167 3.0970 -4.6330 29 1 3.2843 2.9472 -7.5638 30 1 1.8187 3.1863 1.2532 31 1 0.9929 1.7213 1.9412 32 1 3.1226 0.5419 2.2238 33 1 3.8163 2.2190 2.2956 34 1 4.0475 0.5449 -0.0457 35 1 3.9711 2.3568 -0.1480 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308486795.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:18 Heat of formation + Delta-G solvation = -44.664560 kcal Electronic energy + Delta-G solvation = -16446.148335 eV Core-core repulsion = 13864.527895 eV Total energy + Delta-G solvation = -2581.620440 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63757 -38.89831 -36.74523 -34.95799 -34.25434 -31.65176 -27.61091 -27.38729 -26.62437 -25.12457 -23.03878 -21.49203 -20.15149 -19.26686 -18.23205 -17.32216 -16.79582 -16.31061 -16.06276 -15.61768 -15.25286 -14.65929 -14.56357 -14.35091 -14.03245 -13.43445 -13.27028 -13.10717 -12.88449 -12.82661 -12.58467 -12.52066 -12.14615 -11.91928 -11.68225 -11.32281 -11.23639 -11.01277 -10.88615 -9.89257 -9.48790 -8.43728 -6.50214 1.24013 1.29092 1.39565 1.64532 2.22042 2.36726 2.96481 3.04585 3.50445 3.71748 3.87575 3.93042 4.34558 4.39511 4.47388 4.59737 4.65768 4.74890 4.78753 4.86175 4.95215 5.01263 5.06505 5.11149 5.23536 5.28079 5.37771 5.41789 5.66555 5.81966 6.07895 6.24461 6.53921 6.82307 7.15510 7.36397 8.71127 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.035220 B = 0.008087 C = 0.007775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.820781 B = 3461.624647 C = 3600.398328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.642 5.642 3 C 0.063 3.937 4 C 0.483 3.517 5 O -0.595 6.595 6 N -0.701 5.701 7 C 0.234 3.766 8 H 0.026 0.974 9 C -0.139 4.139 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.035 3.965 13 N -0.927 5.927 14 Si 0.925 3.075 15 H -0.273 1.273 16 H -0.274 1.274 17 H -0.260 1.260 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.120 4.120 21 H 0.097 0.903 22 H 0.066 0.934 23 H 0.007 0.993 24 H 0.352 0.648 25 H 0.400 0.600 26 H 0.057 0.943 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.271 0.729 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 -4.375 15.218 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.274 5.274 3 C -0.032 4.032 4 C 0.268 3.732 5 O -0.476 6.476 6 N -0.350 5.350 7 C 0.131 3.869 8 H 0.044 0.956 9 C -0.198 4.198 10 C -0.565 4.565 11 H 0.076 0.924 12 C -0.166 4.166 13 N -0.565 5.565 14 Si 0.750 3.250 15 H -0.199 1.199 16 H -0.200 1.200 17 H -0.184 1.184 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.158 4.158 21 H 0.115 0.885 22 H 0.085 0.915 23 H 0.026 0.974 24 H 0.171 0.829 25 H 0.235 0.765 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.597 -3.611 15.792 16.278 hybrid contribution -0.154 0.863 -1.715 1.926 sum -1.751 -2.749 14.076 14.449 Atomic orbital electron populations 1.22297 0.86924 1.03546 0.99925 1.60514 1.08502 1.08997 1.49423 1.22675 0.98887 0.89483 0.92169 1.22271 0.77421 0.87657 0.85841 1.90588 1.48150 1.22466 1.86377 1.46441 1.66467 1.16276 1.05826 1.18876 0.92839 0.91456 0.83772 0.95562 1.22092 0.97124 1.01323 0.99241 1.21160 1.37412 0.94858 1.03105 0.92438 1.25584 0.93789 1.02577 0.94626 1.69973 1.41124 1.36931 1.08482 0.86074 0.79647 0.81354 0.77901 1.19893 1.19951 1.18444 1.22832 0.99962 0.99294 0.92932 1.22653 0.94989 1.02343 0.94519 1.22942 0.91388 1.02996 0.98495 0.88456 0.91479 0.97387 0.82891 0.76518 0.92437 0.94833 0.93401 0.91925 0.90731 0.90094 0.87865 0.90152 0.88777 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.27 127.69 1.31 1.82 16 2 N -0.64 -14.66 6.55 -494.12 -3.24 -17.90 16 3 C 0.06 1.76 0.90 3.31 0.00 1.76 16 4 C 0.48 18.51 5.84 87.66 0.51 19.02 16 5 O -0.60 -27.62 15.55 -3.01 -0.05 -27.66 16 6 N -0.70 -28.03 5.05 -446.11 -2.25 -30.28 16 7 C 0.23 11.22 2.16 44.25 0.10 11.31 16 8 H 0.03 1.39 4.78 -2.39 -0.01 1.38 16 9 C -0.14 -6.12 9.47 71.98 0.68 -5.44 16 10 C -0.53 -28.50 9.05 25.60 0.23 -28.27 16 11 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 12 C 0.04 1.97 5.47 84.65 0.46 2.43 16 13 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 14 Si 0.93 44.75 27.04 68.60 1.86 46.61 16 15 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 16 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.26 -12.46 6.74 99.48 0.67 -11.79 16 18 C -0.11 -2.87 6.94 31.12 0.22 -2.66 16 19 C -0.11 -2.16 8.00 31.13 0.25 -1.91 16 20 C -0.12 -2.94 7.43 31.12 0.23 -2.71 16 21 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.07 1.53 6.94 -2.39 -0.02 1.51 16 23 H 0.01 0.21 7.46 -2.39 -0.02 0.19 16 24 H 0.35 7.43 8.08 -89.69 -0.72 6.71 16 25 H 0.40 14.10 7.76 -92.71 -0.72 13.38 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.07 2.23 7.42 -2.39 -0.02 2.21 16 31 H 0.08 1.90 7.12 -2.39 -0.02 1.88 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.00 8.09 -2.39 -0.02 1.98 16 Total: -1.00 -65.44 285.56 0.22 -65.21 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.39 Total: 23.26 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 3.99 Total: -4.62 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -5.19 Total: -102.80 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.86 Total: 46.61 kcal Total: -65.44 0.22 -65.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308486795.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.549 kcal (2) G-P(sol) polarization free energy of solvation -65.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds