Wall clock time and date at job start Mon Mar 30 2020 20:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46930 * 2 1 4 4 C 1.50703 * 109.47341 * 240.00228 * 2 1 3 5 5 H 1.07998 * 120.00152 * 239.99883 * 4 2 1 6 6 C 1.37877 * 119.99955 * 59.99319 * 4 2 1 7 7 N 1.31517 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47086 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 120.00116 * 8 6 4 11 11 H 1.48505 * 109.46918 * 240.00292 * 8 6 4 12 12 N 1.46901 * 109.47751 * 119.99850 * 2 1 3 13 13 C 1.46898 * 110.99830 * 275.00269 * 12 2 1 14 14 H 1.09001 * 109.47062 * 34.99735 * 13 12 2 15 15 C 1.53006 * 109.47006 * 154.99481 * 13 12 2 16 16 C 1.50695 * 109.47196 * 295.00195 * 15 13 12 17 17 N 1.34778 * 120.00071 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00019 * 359.97438 * 16 15 13 19 19 C 1.52997 * 109.47123 * 274.99462 * 13 12 2 20 20 C 1.52998 * 117.50018 * 248.62315 * 19 13 12 21 21 C 1.52999 * 117.49804 * 179.97438 * 19 13 12 22 22 H 1.08999 * 109.47716 * 60.00108 * 1 2 3 23 23 H 1.09008 * 109.46867 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47349 * 299.99528 * 1 2 3 25 25 H 0.97000 * 120.00215 * 180.02562 * 7 6 4 26 26 H 1.00900 * 110.99316 * 38.95566 * 12 2 1 27 27 H 1.09007 * 109.46744 * 54.99841 * 15 13 12 28 28 H 1.08995 * 109.46794 * 175.00086 * 15 13 12 29 29 H 0.97000 * 120.00013 * 359.97438 * 17 16 15 30 30 H 0.97004 * 120.00178 * 180.02562 * 17 16 15 31 31 H 1.09003 * 115.54766 * 34.33295 * 19 13 12 32 32 H 1.09004 * 117.49650 * 0.02562 * 20 19 13 33 33 H 1.08993 * 117.49868 * 145.02058 * 20 19 13 34 34 H 1.09002 * 117.50081 * 214.98024 * 21 19 13 35 35 H 1.08997 * 117.50069 * 0.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9433 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1465 -2.2868 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0198 -0.6924 1.1994 13 6 2.0825 0.2227 2.3468 14 1 1.2576 0.9330 2.2906 15 6 1.9771 -0.5796 3.6454 16 6 0.6193 -1.2281 3.7264 17 7 0.2984 -1.9892 4.7914 18 8 -0.1852 -1.0643 2.8337 19 6 3.4111 0.9810 2.3222 20 6 4.4275 0.6612 3.4202 21 6 3.6692 1.9905 3.4426 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7086 1.1613 -3.4844 26 1 1.4497 -1.4979 1.4100 27 1 2.7488 -1.3493 3.6605 28 1 2.1126 0.0876 4.4966 29 1 0.9417 -2.1199 5.5056 30 1 -0.5755 -2.4069 4.8434 31 1 3.7982 1.2191 1.3315 32 1 4.1497 -0.0897 4.1599 33 1 5.4835 0.6888 3.1520 34 1 4.2266 2.8922 3.1891 35 1 2.8926 2.1141 4.1974 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308581658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:21 Heat of formation + Delta-G solvation = -18.186338 kcal Electronic energy + Delta-G solvation = -16263.578942 eV Core-core repulsion = 13683.106684 eV Total energy + Delta-G solvation = -2580.472258 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67820 -37.57306 -35.03692 -33.50906 -32.39909 -30.22601 -27.08918 -24.92493 -24.01860 -22.14747 -20.95137 -20.00034 -18.64946 -17.27305 -16.70080 -16.05765 -15.39822 -14.98471 -14.49536 -14.29530 -13.55368 -13.42870 -12.87267 -12.17526 -12.04739 -11.60999 -11.28747 -11.15775 -10.87890 -10.75187 -10.63482 -10.29111 -10.03288 -9.91229 -9.68245 -9.63469 -9.54530 -9.40140 -8.74105 -8.20268 -7.01547 -5.83036 -3.85422 2.84830 3.39858 3.46922 3.52540 3.65211 4.19472 4.55957 4.91267 5.10296 5.19038 5.28507 5.36916 5.47004 5.48296 5.73881 5.86640 6.03627 6.12087 6.33573 6.37088 6.56087 6.78629 6.86429 7.05718 7.28114 7.40335 7.44509 7.64370 7.98025 8.09716 8.42829 8.49411 8.76704 8.84841 9.22134 9.78810 11.23829 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.008167 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.650070 B = 3427.443458 C = 4015.136985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.030 0.970 4 C -0.490 4.490 5 H 0.060 0.940 6 C 0.053 3.947 7 N -0.897 5.897 8 Si 0.894 3.106 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.287 1.287 12 N -0.674 5.674 13 C 0.131 3.869 14 H 0.049 0.951 15 C -0.146 4.146 16 C 0.507 3.493 17 N -0.864 5.864 18 O -0.521 6.521 19 C -0.120 4.120 20 C -0.186 4.186 21 C -0.193 4.193 22 H 0.078 0.922 23 H 0.024 0.976 24 H 0.011 0.989 25 H 0.257 0.743 26 H 0.331 0.669 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.397 0.603 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -2.127 16.059 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.048 0.952 4 C -0.529 4.529 5 H 0.078 0.922 6 C -0.147 4.147 7 N -0.537 5.537 8 Si 0.722 3.278 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.213 1.213 12 N -0.305 5.305 13 C 0.020 3.980 14 H 0.067 0.933 15 C -0.186 4.186 16 C 0.292 3.708 17 N -0.428 5.428 18 O -0.395 6.395 19 C -0.139 4.139 20 C -0.223 4.223 21 C -0.230 4.230 22 H 0.097 0.903 23 H 0.043 0.957 24 H 0.030 0.970 25 H 0.066 0.934 26 H 0.149 0.851 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.225 0.775 30 H 0.227 0.773 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.128 -1.712 15.052 15.468 hybrid contribution -0.707 -0.570 -0.202 0.931 sum 2.421 -2.283 14.849 15.218 Atomic orbital electron populations 1.22257 1.00133 0.99159 0.99928 1.19139 0.89987 0.94023 0.86232 0.95162 1.21233 1.29682 1.12155 0.89812 0.92158 1.24945 0.95533 0.95288 0.98890 1.69925 1.37584 1.23343 1.22882 0.86511 0.78424 0.79651 0.83187 1.19853 1.21343 1.21288 1.60920 1.57839 1.08841 1.02935 1.20630 0.94342 0.93892 0.89161 0.93319 1.22059 0.94350 1.01147 1.01062 1.20963 0.90059 0.78375 0.81396 1.43949 1.20332 1.54478 1.24047 1.90860 1.51343 1.59967 1.37347 1.22388 0.96612 0.99893 0.94975 1.23022 0.97681 0.98581 1.03028 1.22965 1.03535 0.93626 1.02892 0.90294 0.95693 0.96975 0.93357 0.85071 0.88072 0.89145 0.77537 0.77290 0.86840 0.89004 0.89438 0.89261 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 8.20 37.15 0.30 -3.89 16 2 C 0.21 5.72 2.39 -68.87 -0.16 5.56 16 3 H 0.03 0.88 7.48 -51.93 -0.39 0.49 16 4 C -0.49 -14.25 8.84 -34.44 -0.30 -14.55 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -26.94 11.32 55.43 0.63 -26.31 16 8 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 N -0.67 -15.09 5.91 -100.95 -0.60 -15.69 16 13 C 0.13 2.40 1.81 -67.71 -0.12 2.28 16 14 H 0.05 1.02 6.93 -51.93 -0.36 0.66 16 15 C -0.15 -1.96 3.89 -27.88 -0.11 -2.07 16 16 C 0.51 7.38 7.57 -10.99 -0.08 7.30 16 17 N -0.86 -8.19 8.87 31.22 0.28 -7.91 16 18 O -0.52 -10.32 13.97 5.56 0.08 -10.24 16 19 C -0.12 -2.01 5.72 -90.62 -0.52 -2.53 16 20 C -0.19 -2.42 9.57 -26.71 -0.26 -2.68 16 21 C -0.19 -2.55 9.87 -26.71 -0.26 -2.82 16 22 H 0.08 2.31 6.07 -51.93 -0.32 2.00 16 23 H 0.02 0.66 8.13 -51.92 -0.42 0.24 16 24 H 0.01 0.30 6.72 -51.93 -0.35 -0.05 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.33 7.52 6.24 -39.29 -0.25 7.27 16 27 H 0.10 1.24 7.32 -51.93 -0.38 0.86 16 28 H 0.09 0.97 6.71 -51.93 -0.35 0.62 16 29 H 0.40 2.37 8.83 -40.82 -0.36 2.01 16 30 H 0.40 3.48 8.93 -40.82 -0.36 3.11 16 31 H 0.11 2.24 7.94 -51.93 -0.41 1.83 16 32 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.04 7.59 -51.93 -0.39 0.65 16 LS Contribution 281.27 15.07 4.24 4.24 Total: -1.00 -33.15 281.27 -7.04 -40.20 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.03 Total: 10.29 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.61 Total: -11.94 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.31 Total: -49.91 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.15 -7.04 -40.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308581658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.010 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds