Wall clock time and date at job start Mon Mar 30 2020 20:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46930 * 2 1 4 4 C 1.50703 * 109.47341 * 240.00228 * 2 1 3 5 5 H 1.07998 * 120.00152 * 239.99883 * 4 2 1 6 6 C 1.37877 * 119.99955 * 59.99319 * 4 2 1 7 7 N 1.31517 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47086 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47511 * 120.00116 * 8 6 4 11 11 H 1.48505 * 109.46918 * 240.00292 * 8 6 4 12 12 N 1.46901 * 109.47751 * 119.99850 * 2 1 3 13 13 C 1.46898 * 110.99830 * 275.00269 * 12 2 1 14 14 H 1.09001 * 109.47062 * 34.99735 * 13 12 2 15 15 C 1.53006 * 109.47006 * 154.99481 * 13 12 2 16 16 C 1.50695 * 109.47196 * 295.00195 * 15 13 12 17 17 N 1.34778 * 120.00071 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00019 * 359.97438 * 16 15 13 19 19 C 1.52997 * 109.47123 * 274.99462 * 13 12 2 20 20 C 1.52998 * 117.50018 * 248.62315 * 19 13 12 21 21 C 1.52999 * 117.49804 * 179.97438 * 19 13 12 22 22 H 1.08999 * 109.47716 * 60.00108 * 1 2 3 23 23 H 1.09008 * 109.46867 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47349 * 299.99528 * 1 2 3 25 25 H 0.97000 * 120.00215 * 180.02562 * 7 6 4 26 26 H 1.00900 * 110.99316 * 38.95566 * 12 2 1 27 27 H 1.09007 * 109.46744 * 54.99841 * 15 13 12 28 28 H 1.08995 * 109.46794 * 175.00086 * 15 13 12 29 29 H 0.97000 * 120.00013 * 359.97438 * 17 16 15 30 30 H 0.97004 * 120.00178 * 180.02562 * 17 16 15 31 31 H 1.09003 * 115.54766 * 34.33295 * 19 13 12 32 32 H 1.09004 * 117.49650 * 0.02562 * 20 19 13 33 33 H 1.08993 * 117.49868 * 145.02058 * 20 19 13 34 34 H 1.09002 * 117.50081 * 214.98024 * 21 19 13 35 35 H 1.08997 * 117.50069 * 0.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9433 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1465 -2.2868 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0198 -0.6924 1.1994 13 6 2.0825 0.2227 2.3468 14 1 1.2576 0.9330 2.2906 15 6 1.9771 -0.5796 3.6454 16 6 0.6193 -1.2281 3.7264 17 7 0.2984 -1.9892 4.7914 18 8 -0.1852 -1.0643 2.8337 19 6 3.4111 0.9810 2.3222 20 6 4.4275 0.6612 3.4202 21 6 3.6692 1.9905 3.4426 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7086 1.1613 -3.4844 26 1 1.4497 -1.4979 1.4100 27 1 2.7488 -1.3493 3.6605 28 1 2.1126 0.0876 4.4966 29 1 0.9417 -2.1199 5.5056 30 1 -0.5755 -2.4069 4.8434 31 1 3.7982 1.2191 1.3315 32 1 4.1497 -0.0897 4.1599 33 1 5.4835 0.6888 3.1520 34 1 4.2266 2.8922 3.1891 35 1 2.8926 2.1141 4.1974 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308581658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:21 Heat of formation + Delta-G solvation = -44.670656 kcal Electronic energy + Delta-G solvation = -16264.727389 eV Core-core repulsion = 13683.106684 eV Total energy + Delta-G solvation = -2581.620704 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.90986 -38.84382 -36.86188 -34.57397 -34.32872 -31.86388 -28.82117 -27.19712 -25.45251 -23.19406 -22.48344 -21.64903 -19.97811 -18.56376 -18.06106 -17.68642 -16.92117 -16.55005 -16.07172 -15.67543 -15.12815 -14.90314 -14.30214 -14.09267 -13.70372 -13.27918 -13.04151 -12.83632 -12.55068 -12.41517 -12.18711 -12.09865 -12.08982 -11.66087 -11.15191 -10.91786 -10.90233 -10.66086 -10.55645 -10.45432 -8.86526 -8.06749 -6.18338 1.41158 1.41567 1.55230 1.74222 2.44820 2.68956 3.03981 3.20462 3.65954 3.82668 4.09866 4.17919 4.21824 4.39633 4.58928 4.66886 4.79964 4.88386 4.94506 5.05830 5.07495 5.17652 5.26270 5.37295 5.42960 5.52361 5.71930 5.86273 5.99654 6.32486 6.55953 6.71442 6.91433 6.99910 7.48105 7.51538 8.99372 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.008167 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.650070 B = 3427.443458 C = 4015.136985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.223 3.777 3 H -0.003 1.003 4 C -0.512 4.512 5 H 0.054 0.946 6 C 0.003 3.997 7 N -0.926 5.926 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.672 5.672 13 C 0.132 3.868 14 H 0.012 0.988 15 C -0.135 4.135 16 C 0.503 3.497 17 N -0.835 5.835 18 O -0.584 6.584 19 C -0.163 4.163 20 C -0.158 4.158 21 C -0.175 4.175 22 H 0.052 0.948 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.260 0.740 26 H 0.328 0.672 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.419 0.581 30 H 0.404 0.596 31 H 0.069 0.931 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -3.182 18.146 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.114 3.886 3 H 0.015 0.985 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.566 5.566 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.205 1.205 12 N -0.302 5.302 13 C 0.021 3.979 14 H 0.030 0.970 15 C -0.175 4.175 16 C 0.288 3.712 17 N -0.400 5.400 18 O -0.464 6.464 19 C -0.182 4.182 20 C -0.195 4.195 21 C -0.212 4.212 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.250 0.750 30 H 0.235 0.765 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.488 -2.791 17.219 18.011 hybrid contribution -1.117 -0.210 -0.766 1.370 sum 3.371 -3.001 16.453 17.060 Atomic orbital electron populations 1.22006 1.00519 0.98005 0.98656 1.18823 0.89376 0.92417 0.87937 0.98490 1.21518 1.30095 1.12278 0.91202 0.92766 1.25806 0.95554 0.95975 1.02097 1.70061 1.38288 1.24523 1.23753 0.85420 0.78015 0.78625 0.79011 1.19102 1.20714 1.20481 1.60828 1.56826 1.09249 1.03328 1.20627 0.93977 0.93209 0.90108 0.96960 1.21997 0.94424 1.01726 0.99333 1.21174 0.89889 0.78525 0.81568 1.43667 1.21073 1.52265 1.22983 1.90845 1.53072 1.62493 1.39953 1.22122 0.97514 1.03925 0.94660 1.23176 0.97040 0.98778 1.00476 1.23073 1.03650 0.93838 1.00628 0.92907 0.96561 0.96623 0.93142 0.85376 0.85868 0.85237 0.74974 0.76499 0.91284 0.85994 0.88773 0.88750 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.52 8.20 71.98 0.59 -6.93 16 2 C 0.22 12.57 2.39 44.17 0.11 12.67 16 3 H 0.00 -0.18 7.48 -2.39 -0.02 -0.19 16 4 C -0.51 -30.76 8.84 25.60 0.23 -30.53 16 5 H 0.05 3.24 7.81 -2.91 -0.02 3.22 16 6 C 0.00 0.18 5.30 84.65 0.45 0.63 16 7 N -0.93 -57.27 11.32 21.45 0.24 -57.02 16 8 Si 0.96 46.56 29.54 68.60 2.03 48.58 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 N -0.67 -31.00 5.91 -473.31 -2.80 -33.80 16 13 C 0.13 4.86 1.81 44.92 0.08 4.94 16 14 H 0.01 0.54 6.93 -2.39 -0.02 0.53 16 15 C -0.14 -3.27 3.89 29.85 0.12 -3.15 16 16 C 0.50 13.80 7.57 87.66 0.66 14.46 16 17 N -0.84 -13.30 8.87 -173.53 -1.54 -14.84 16 18 O -0.58 -23.39 13.97 -3.04 -0.04 -23.43 16 19 C -0.16 -5.47 5.72 -10.80 -0.06 -5.53 16 20 C -0.16 -3.59 9.57 30.61 0.29 -3.30 16 21 C -0.17 -4.21 9.87 30.61 0.30 -3.91 16 22 H 0.05 3.24 6.07 -2.39 -0.01 3.22 16 23 H 0.02 0.89 8.13 -2.38 -0.02 0.87 16 24 H 0.01 0.82 6.72 -2.39 -0.02 0.80 16 25 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 26 H 0.33 15.25 6.24 -89.69 -0.56 14.69 16 27 H 0.12 2.50 7.32 -2.38 -0.02 2.48 16 28 H 0.13 2.15 6.71 -2.39 -0.02 2.13 16 29 H 0.42 3.17 8.83 -92.71 -0.82 2.35 16 30 H 0.40 6.05 8.93 -92.71 -0.83 5.22 16 31 H 0.07 2.91 7.94 -2.39 -0.02 2.89 16 32 H 0.12 2.04 5.88 -2.39 -0.01 2.02 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.11 2.17 7.59 -2.39 -0.02 2.15 16 Total: -1.00 -76.48 281.27 -0.43 -76.91 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -1.09 Total: 24.25 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 2.77 Total: -20.65 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -4.09 Total: -105.66 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.04 Total: -23.43 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -76.48 -0.43 -76.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308581658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.238 kcal (2) G-P(sol) polarization free energy of solvation -76.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds