Wall clock time and date at job start Mon Mar 30 2020 20:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21280 * 119.99855 * 2 1 4 4 N 1.34779 * 119.99984 * 179.97438 * 2 1 3 5 5 C 1.47577 * 134.49445 * 180.02562 * 4 2 1 6 6 C 1.53945 * 86.11953 * 155.36225 * 5 4 2 7 7 C 1.52994 * 113.74052 * 137.95545 * 6 5 4 8 8 N 1.46906 * 109.46817 * 176.92784 * 7 6 5 9 9 C 1.46903 * 110.99973 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46808 * 325.00209 * 9 8 7 11 11 C 1.53000 * 109.47120 * 84.99803 * 9 8 7 12 12 C 1.50694 * 109.47066 * 204.99831 * 9 8 7 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47814 * 134.45548 * 359.87273 * 4 2 1 21 21 H 1.08995 * 109.47091 * 240.00004 * 1 2 3 22 22 H 1.08996 * 109.46761 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46423 * 120.00117 * 1 2 3 24 24 H 1.09000 * 113.76735 * 41.06000 * 5 4 2 25 25 H 1.09001 * 113.87719 * 269.67815 * 5 4 2 26 26 H 1.09006 * 113.74015 * 269.15512 * 6 5 4 27 27 H 1.08993 * 109.47410 * 56.92859 * 7 6 5 28 28 H 1.08998 * 109.47442 * 296.92133 * 7 6 5 29 29 H 1.00904 * 110.99866 * 303.94610 * 8 7 6 30 30 H 1.08997 * 109.47359 * 180.02562 * 11 9 8 31 31 H 1.09007 * 109.47356 * 300.00024 * 11 9 8 32 32 H 1.09000 * 109.47156 * 59.99749 * 11 9 8 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 34 34 H 1.09000 * 113.76566 * 90.38106 * 20 4 2 35 35 H 1.09000 * 113.83628 * 318.91935 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6097 -1.5366 0.0012 6 6 3.1591 -2.8620 0.6416 7 6 3.8699 -4.0927 0.0751 8 7 3.4256 -5.2913 0.7992 9 6 4.0883 -6.4954 0.2807 10 1 4.2339 -6.3954 -0.7949 11 6 5.4460 -6.6652 0.9655 12 6 3.2298 -7.7016 0.5615 13 1 2.2864 -7.5855 1.0742 14 6 3.6492 -8.9538 0.1648 15 7 4.7983 -9.0953 -0.4591 16 14 2.5853 -10.4490 0.5135 17 1 2.9497 -11.0185 1.8356 18 1 1.1556 -10.0476 0.5245 19 1 2.8047 -11.4698 -0.5426 20 6 1.7848 -2.5913 0.0035 21 1 -0.3633 -0.5138 0.8899 22 1 -0.3633 1.0276 -0.0005 23 1 -0.3632 -0.5139 -0.8900 24 1 4.2230 -0.9182 0.6565 25 1 4.0358 -1.6527 -0.9954 26 1 3.1485 -2.8415 1.7314 27 1 4.9473 -3.9761 0.1922 28 1 3.6286 -4.1970 -0.9827 29 1 3.5797 -5.1922 1.7914 30 1 5.9380 -7.5584 0.5805 31 1 6.0671 -5.7927 0.7624 32 1 5.3004 -6.7651 2.0411 33 1 5.0935 -9.9763 -0.7379 34 1 1.6715 -3.0178 -0.9932 35 1 0.9439 -2.8132 0.6606 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308653254.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:41 Heat of formation + Delta-G solvation = -28.783988 kcal Electronic energy + Delta-G solvation = -15426.744756 eV Core-core repulsion = 12845.812950 eV Total energy + Delta-G solvation = -2580.931807 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25197 -39.05713 -37.44126 -34.50752 -32.36647 -30.79738 -28.77463 -27.20977 -27.04379 -25.34930 -22.09905 -21.57024 -19.90359 -18.35526 -17.89434 -16.93561 -16.85440 -16.62792 -15.84147 -15.61725 -15.15548 -14.57890 -14.05064 -13.71829 -13.60191 -13.41880 -13.40377 -13.03022 -13.00744 -12.81020 -12.55318 -12.43482 -12.13583 -12.12555 -11.82921 -11.48370 -11.03358 -10.79549 -10.43791 -9.73861 -8.88562 -8.04923 -6.15412 1.46904 1.48307 1.57942 1.58453 1.88996 2.48272 3.24016 3.28759 3.62492 3.82406 4.06060 4.23278 4.38191 4.48366 4.54002 4.58201 4.62231 4.71438 4.76804 4.82901 4.86273 4.92366 4.97559 5.11191 5.17322 5.36344 5.48504 5.75124 5.87743 6.33041 6.69921 6.71591 6.90440 7.01459 7.09295 7.54893 9.00436 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049856 B = 0.004816 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.488060 B = 5812.371696 C = 6226.003929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.520 3.480 3 O -0.609 6.609 4 N -0.649 5.649 5 C 0.104 3.896 6 C -0.103 4.103 7 C 0.073 3.927 8 N -0.681 5.681 9 C 0.214 3.786 10 H 0.004 0.996 11 C -0.158 4.158 12 C -0.510 4.510 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.925 5.925 16 Si 0.958 3.042 17 H -0.278 1.278 18 H -0.268 1.268 19 H -0.288 1.288 20 C 0.121 3.879 21 H 0.107 0.893 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.333 0.667 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.032 0.968 33 H 0.259 0.741 34 H 0.094 0.906 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 11.447 1.634 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.313 3.687 3 O -0.492 6.492 4 N -0.384 5.384 5 C -0.019 4.019 6 C -0.122 4.122 7 C -0.057 4.057 8 N -0.311 5.311 9 C 0.106 3.894 10 H 0.022 0.978 11 C -0.218 4.218 12 C -0.549 4.549 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.784 3.216 17 H -0.204 1.204 18 H -0.192 1.192 19 H -0.214 1.214 20 C 0.000 4.000 21 H 0.125 0.875 22 H 0.111 0.889 23 H 0.124 0.876 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.124 0.876 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.852 11.960 1.154 13.832 hybrid contribution 0.904 -0.855 0.272 1.274 sum -5.948 11.105 1.425 12.678 Atomic orbital electron populations 1.21863 0.87959 1.05912 1.06083 1.21349 0.92013 0.81193 0.74176 1.90674 1.72364 1.32466 1.53681 1.50351 1.09481 1.06404 1.72119 1.23273 0.83718 0.93439 1.01434 1.22988 0.95799 0.92247 1.01186 1.21837 0.96350 0.89222 0.98306 1.60664 1.61372 1.01670 1.07419 1.18932 0.89719 0.87629 0.93156 0.97843 1.22258 1.00093 1.00325 0.99086 1.21485 1.05118 0.91797 1.36499 0.92364 1.25705 0.96337 1.01710 0.95311 1.70015 1.21718 1.23682 1.41122 0.85556 0.79433 0.79073 0.77519 1.20394 1.19235 1.21402 1.23425 0.98560 0.76130 1.01931 0.87478 0.88863 0.87639 0.90456 0.89081 0.87598 0.95737 0.91845 0.85002 0.92288 0.95592 0.94923 0.93188 0.88745 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.07 71.24 0.72 -1.77 16 2 C 0.52 13.43 8.17 87.66 0.72 14.14 16 3 O -0.61 -21.48 17.81 -3.03 -0.05 -21.54 16 4 N -0.65 -15.20 3.61 -835.95 -3.02 -18.22 16 5 C 0.10 2.38 8.41 86.49 0.73 3.11 16 6 C -0.10 -2.32 4.08 -10.14 -0.04 -2.36 16 7 C 0.07 2.15 5.32 86.30 0.46 2.60 16 8 N -0.68 -25.13 6.23 -495.46 -3.09 -28.22 16 9 C 0.21 10.14 2.57 44.17 0.11 10.26 16 10 H 0.00 0.19 7.80 -2.39 -0.02 0.17 16 11 C -0.16 -7.23 8.94 71.98 0.64 -6.59 16 12 C -0.51 -26.94 8.84 25.60 0.23 -26.71 16 13 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 14 C 0.01 0.39 5.30 84.66 0.45 0.83 16 15 N -0.92 -52.08 11.32 21.45 0.24 -51.84 16 16 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 20 C 0.12 2.44 8.18 86.43 0.71 3.14 16 21 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 23 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 26 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 27 H 0.02 0.74 7.44 -2.39 -0.02 0.72 16 28 H 0.06 1.95 7.79 -2.39 -0.02 1.93 16 29 H 0.33 11.50 8.47 -89.69 -0.76 10.74 16 30 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 31 H 0.03 1.03 7.45 -2.38 -0.02 1.02 16 32 H 0.03 1.41 8.13 -2.39 -0.02 1.39 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.09 1.88 7.92 -2.39 -0.02 1.86 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -65.18 293.84 1.13 -64.05 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.31 Total: 14.51 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 4.72 Total: -3.34 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -5.86 Total: -98.28 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.18 1.13 -64.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308653254.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.263 kcal (2) G-P(sol) polarization free energy of solvation -65.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds