Wall clock time and date at job start Mon Mar 30 2020 20:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99831 * 2 1 4 4 N 1.34773 * 120.00342 * 179.97438 * 2 1 3 5 5 C 1.47026 * 125.64721 * 359.97438 * 4 2 1 6 6 C 1.54319 * 107.26838 * 178.95696 * 5 4 2 7 7 C 1.55152 * 102.94774 * 337.80632 * 6 5 4 8 8 H 1.09004 * 111.00518 * 277.39555 * 7 6 5 9 9 N 1.46897 * 111.00668 * 153.57492 * 7 6 5 10 10 C 1.46896 * 111.00119 * 155.00322 * 9 7 6 11 11 H 1.08996 * 109.47227 * 34.99623 * 10 9 7 12 12 C 1.53005 * 109.46979 * 275.00379 * 10 9 7 13 13 C 1.50696 * 109.47452 * 154.99982 * 10 9 7 14 14 H 1.07999 * 119.99822 * 0.02562 * 13 10 9 15 15 C 1.37884 * 120.00126 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99707 * 180.02562 * 15 13 10 17 17 Si 1.86796 * 119.99956 * 0.27447 * 15 13 10 18 18 H 1.48503 * 109.47407 * 269.72718 * 17 15 13 19 19 H 1.48505 * 109.47281 * 29.72474 * 17 15 13 20 20 H 1.48501 * 109.47274 * 149.72572 * 17 15 13 21 21 C 1.47420 * 125.64772 * 180.02562 * 4 2 1 22 22 H 1.08997 * 109.47050 * 239.99896 * 1 2 3 23 23 H 1.08999 * 109.46973 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46914 * 120.00525 * 1 2 3 25 25 H 1.09000 * 109.88185 * 59.53937 * 5 4 2 26 26 H 1.09002 * 109.87734 * 298.37522 * 5 4 2 27 27 H 1.09005 * 110.71858 * 219.43694 * 6 5 4 28 28 H 1.09004 * 110.87156 * 96.24371 * 6 5 4 29 29 H 1.00897 * 110.99978 * 31.04370 * 9 7 6 30 30 H 1.08992 * 109.47457 * 59.99771 * 12 10 9 31 31 H 1.09001 * 109.47420 * 180.02562 * 12 10 9 32 32 H 1.09004 * 109.46832 * 299.99674 * 12 10 9 33 33 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 34 34 H 1.09001 * 110.36699 * 85.27570 * 21 4 2 35 35 H 1.08994 * 110.36979 * 322.94516 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.5748 -2.5066 0.0017 6 6 2.7283 -3.5314 -0.0249 7 6 3.9082 -2.7117 -0.6106 8 1 3.8588 -2.6787 -1.6990 9 7 5.1985 -3.2510 -0.1610 10 6 6.2686 -2.9160 -1.1099 11 1 6.0823 -1.9294 -1.5341 12 6 6.2993 -3.9558 -2.2319 13 6 7.5936 -2.9121 -0.3921 14 1 7.6365 -3.1366 0.6634 15 6 8.7512 -2.6231 -1.0831 16 7 9.9076 -2.6203 -0.4567 17 14 8.6762 -2.2287 -2.9074 18 1 8.8229 -3.4815 -3.6912 19 1 7.3701 -1.5969 -3.2241 20 1 9.7759 -1.2942 -3.2575 21 6 3.6481 -1.3121 0.0011 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5139 -0.8899 25 1 0.9482 -2.6307 -0.8816 26 1 0.9785 -2.6428 0.9039 27 1 2.4826 -4.3718 -0.6743 28 1 2.9621 -3.8791 0.9814 29 1 5.1429 -4.2480 -0.0159 30 1 5.3410 -3.9586 -2.7511 31 1 7.0936 -3.7075 -2.9358 32 1 6.4856 -4.9425 -1.8077 33 1 10.7221 -2.4173 -0.9430 34 1 4.0335 -1.2654 1.0197 35 1 4.1060 -0.5381 -0.6146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308654923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:47 Heat of formation + Delta-G solvation = -27.892752 kcal Electronic energy + Delta-G solvation = -15956.675056 eV Core-core repulsion = 13375.781896 eV Total energy + Delta-G solvation = -2580.893160 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89696 -37.71304 -35.53190 -32.61582 -31.25872 -29.83130 -29.11087 -26.66337 -25.10354 -23.20194 -20.72560 -20.15470 -19.17424 -17.05128 -16.63905 -16.36050 -15.34730 -14.93682 -14.62680 -13.84574 -13.67747 -13.46182 -12.93174 -12.80348 -12.61371 -12.51601 -12.24768 -12.15357 -11.95361 -11.50349 -11.17845 -10.90299 -10.71523 -10.33645 -10.12960 -9.83015 -9.52222 -9.16782 -8.59829 -8.55326 -7.58281 -6.05256 -4.02960 2.68085 3.05811 3.24565 3.35945 3.38513 4.39867 4.47180 4.57004 4.79501 4.94717 5.06200 5.14351 5.24266 5.25539 5.40215 5.52306 5.63450 5.69735 5.86507 6.04486 6.12861 6.17140 6.24276 6.29518 6.39558 6.46493 6.73693 7.05930 7.59143 7.68181 7.84511 8.21639 8.22461 8.66233 9.05757 9.57063 11.08231 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037740 B = 0.006563 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.748679 B = 4265.006571 C = 4533.051368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.521 3.479 3 O -0.548 6.548 4 N -0.620 5.620 5 C 0.106 3.894 6 C -0.137 4.137 7 C 0.073 3.927 8 H 0.054 0.946 9 N -0.660 5.660 10 C 0.182 3.818 11 H 0.035 0.965 12 C -0.182 4.182 13 C -0.499 4.499 14 H 0.082 0.918 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.270 1.270 20 H -0.296 1.296 21 C 0.115 3.885 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.337 0.663 30 H 0.025 0.975 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.043 -2.349 -1.203 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.310 3.690 3 O -0.426 6.426 4 N -0.355 5.355 5 C -0.018 4.018 6 C -0.175 4.175 7 C -0.038 4.038 8 H 0.072 0.928 9 N -0.291 5.291 10 C 0.073 3.927 11 H 0.052 0.948 12 C -0.241 4.241 13 C -0.537 4.537 14 H 0.100 0.900 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.195 1.195 20 H -0.223 1.223 21 C -0.008 4.008 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.156 0.844 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.427 -1.143 -0.797 18.480 hybrid contribution -0.089 -0.555 -1.863 1.946 sum -18.517 -1.698 -2.660 18.784 Atomic orbital electron populations 1.21883 0.91791 1.05122 1.03931 1.20443 0.90230 0.82205 0.76146 1.90738 1.70861 1.30672 1.50297 1.48581 1.08324 1.05570 1.73038 1.21972 0.96344 0.82163 1.01299 1.22866 0.94410 0.97254 1.03002 1.22622 0.90241 0.93933 0.97049 0.92800 1.60486 1.01558 1.18098 1.48922 1.19719 0.91285 0.93503 0.88208 0.94766 1.22863 0.98560 1.02056 1.00639 1.20943 0.88070 1.46902 0.97823 0.89951 1.24933 0.95436 0.95127 0.97831 1.69880 0.98065 1.49637 1.36247 0.86915 0.77364 0.77750 0.86445 1.20796 1.19496 1.22329 1.22320 0.78422 0.97571 1.02475 0.89612 0.89160 0.89688 0.91617 0.91380 0.90308 0.89452 0.84422 0.95581 0.93577 0.92611 0.92654 0.90056 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.51 36.01 0.34 -1.14 16 2 C 0.52 7.55 7.96 -10.98 -0.09 7.46 16 3 O -0.55 -10.61 17.34 5.55 0.10 -10.52 16 4 N -0.62 -8.61 3.33 -170.50 -0.57 -9.17 16 5 C 0.11 1.05 6.49 -3.06 -0.02 1.03 16 6 C -0.14 -1.51 6.35 -24.90 -0.16 -1.67 16 7 C 0.07 1.14 3.12 -65.55 -0.20 0.94 16 8 H 0.05 0.88 7.25 -51.93 -0.38 0.50 16 9 N -0.66 -12.50 6.14 -98.70 -0.61 -13.11 16 10 C 0.18 4.16 2.03 -68.87 -0.14 4.02 16 11 H 0.03 0.84 6.90 -51.93 -0.36 0.48 16 12 C -0.18 -3.79 8.63 37.16 0.32 -3.47 16 13 C -0.50 -13.90 9.42 -34.44 -0.32 -14.22 16 14 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 15 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 16 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 17 Si 0.88 22.01 24.38 -169.99 -4.14 17.87 16 18 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 19 H -0.27 -6.49 6.52 56.52 0.37 -6.12 16 20 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 21 C 0.11 1.94 6.60 -2.51 -0.02 1.92 16 22 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.34 5.82 8.18 -39.29 -0.32 5.49 16 30 H 0.03 0.46 7.53 -51.93 -0.39 0.07 16 31 H 0.05 1.03 3.29 -51.93 -0.17 0.86 16 32 H 0.05 1.11 8.13 -51.93 -0.42 0.68 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 LS Contribution 282.02 15.07 4.25 4.25 Total: -1.00 -33.02 282.02 -6.03 -39.04 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.44 Total: 1.74 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.38 Total: -3.27 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.40 Total: -49.12 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.10 Total: -10.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.02 -6.03 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308654923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.151 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds