Wall clock time and date at job start Mon Mar 30 2020 20:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.37360 * 2 1 4 4 C 1.52998 * 109.28311 * 240.29604 * 2 1 3 5 5 N 1.47195 * 108.71706 * 189.57992 * 4 2 1 6 6 C 1.46898 * 110.99485 * 192.37601 * 5 4 2 7 7 C 1.53002 * 109.47585 * 303.14951 * 6 5 4 8 8 C 1.50696 * 109.46997 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.46900 * 110.17528 * 69.01257 * 5 4 2 17 17 C 1.50266 * 109.97666 * 309.69942 * 16 5 4 18 18 O 1.21276 * 118.62089 * 197.20009 * 17 16 5 19 19 N 1.33711 * 122.74942 * 17.18340 * 17 16 5 20 20 C 1.46501 * 118.53576 * 178.31177 * 19 17 16 21 21 H 1.09000 * 109.47147 * 300.22922 * 1 2 3 22 22 H 1.09000 * 109.47443 * 60.22978 * 1 2 3 23 23 H 1.09006 * 109.47218 * 180.22828 * 1 2 3 24 24 H 1.09003 * 109.59303 * 69.81406 * 4 2 1 25 25 H 1.09008 * 109.61003 * 309.35367 * 4 2 1 26 26 H 1.09005 * 109.46746 * 183.15332 * 6 5 4 27 27 H 1.09002 * 109.47495 * 63.15452 * 6 5 4 28 28 H 1.09005 * 109.46767 * 60.00394 * 7 6 5 29 29 H 1.09002 * 109.47113 * 300.00734 * 7 6 5 30 30 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 31 31 H 1.09000 * 109.38882 * 69.85205 * 16 5 4 32 32 H 1.08998 * 109.38473 * 189.54774 * 16 5 4 33 33 H 1.08998 * 109.47168 * 0.02562 * 20 19 17 34 34 H 1.09004 * 109.46959 * 119.99821 * 20 19 17 35 35 H 1.08999 * 109.47315 * 239.99542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8915 1.0283 0.0000 4 6 2.0352 -0.7156 -1.2544 5 7 3.4887 -0.9131 -1.1324 6 6 4.0735 -1.3246 -2.4156 7 6 3.3811 -2.5975 -2.9069 8 6 3.9816 -3.0198 -4.2229 9 1 4.7777 -2.4388 -4.6646 10 6 3.5145 -4.1481 -4.8633 11 7 4.0389 -4.5171 -6.0116 12 14 2.1371 -5.1526 -4.0997 13 1 2.7164 -6.1963 -3.2164 14 1 1.2579 -4.2608 -3.3016 15 1 1.3418 -5.7992 -5.1743 16 6 3.7798 -1.8973 -0.0814 17 6 3.0451 -1.5356 1.1784 18 8 3.4020 -2.0369 2.2235 19 7 2.0144 -0.6840 1.1956 20 6 1.3409 -0.4259 2.4707 21 1 -0.3633 0.5174 0.8879 22 1 -0.3634 0.5102 -0.8920 23 1 -0.3634 -1.0277 0.0041 24 1 1.8214 -0.1074 -2.1333 25 1 1.5414 -1.6829 -1.3477 26 1 5.1383 -1.5178 -2.2843 27 1 3.9361 -0.5300 -3.1490 28 1 2.3164 -2.4043 -3.0382 29 1 3.5185 -3.3920 -2.1735 30 1 3.7105 -5.3110 -6.4619 31 1 3.4632 -2.8860 -0.4138 32 1 4.8518 -1.9097 0.1158 33 1 1.8189 -1.0082 3.2585 34 1 1.4108 0.6352 2.7103 35 1 0.2921 -0.7122 2.3922 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334975991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:52 Heat of formation + Delta-G solvation = -28.211804 kcal Electronic energy + Delta-G solvation = -16296.471770 eV Core-core repulsion = 13715.564775 eV Total energy + Delta-G solvation = -2580.906995 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50038 -37.47980 -35.99756 -32.97346 -31.50403 -30.44760 -27.87482 -27.22667 -25.13462 -22.74937 -22.49715 -20.34914 -18.27270 -17.05063 -17.00460 -16.42877 -15.66195 -14.91183 -14.52505 -14.04664 -13.81570 -13.39276 -13.30774 -13.16148 -12.65690 -12.51605 -12.25901 -11.99836 -11.81700 -11.72555 -11.20503 -11.08373 -10.88163 -10.55244 -10.06346 -9.87611 -9.63998 -9.33446 -8.70432 -8.62526 -7.98519 -6.13655 -4.12735 2.72899 3.03284 3.22583 3.30817 3.31249 4.09426 4.35630 4.59493 4.70327 5.03387 5.10931 5.19316 5.29067 5.39798 5.43340 5.51921 5.57643 5.72612 5.75041 5.85629 5.90781 6.02603 6.09165 6.25081 6.42039 6.55447 6.93390 6.99400 7.23365 7.33010 7.46921 7.71512 8.23749 8.42317 8.90806 9.48252 10.99511 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034557 B = 0.007275 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.062626 B = 3847.998867 C = 3923.609722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 H 0.081 0.919 4 C 0.036 3.964 5 N -0.535 5.535 6 C 0.064 3.936 7 C -0.047 4.047 8 C -0.520 4.520 9 H 0.075 0.925 10 C 0.069 3.931 11 N -0.899 5.899 12 Si 0.878 3.122 13 H -0.277 1.277 14 H -0.269 1.269 15 H -0.286 1.286 16 C 0.033 3.967 17 C 0.525 3.475 18 O -0.560 6.560 19 N -0.603 5.603 20 C 0.072 3.928 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.019 0.981 29 H 0.011 0.989 30 H 0.264 0.736 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 9.455 12.182 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.098 0.902 4 C -0.092 4.092 5 N -0.259 5.259 6 C -0.063 4.063 7 C -0.086 4.086 8 C -0.559 4.559 9 H 0.093 0.907 10 C -0.133 4.133 11 N -0.538 5.538 12 Si 0.705 3.295 13 H -0.202 1.202 14 H -0.193 1.193 15 H -0.212 1.212 16 C -0.098 4.098 17 C 0.314 3.686 18 O -0.439 6.439 19 N -0.337 5.337 20 C -0.071 4.071 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.037 0.963 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.306 9.519 12.707 17.477 hybrid contribution -1.148 -1.435 -0.107 1.841 sum -8.455 8.083 12.600 17.192 Atomic orbital electron populations 1.22162 0.94387 1.02864 1.02809 1.21140 0.93991 0.96761 0.84021 0.90150 1.22555 0.89266 1.00430 0.96970 1.62951 1.10905 1.44176 1.07918 1.22256 0.98984 0.97850 0.87198 1.20184 0.96700 0.94129 0.97562 1.20983 1.20565 1.10742 1.03570 0.90725 1.25023 0.96401 0.97175 0.94653 1.69906 1.42442 1.25514 1.15923 0.86815 0.82817 0.80680 0.79145 1.20247 1.19341 1.21212 1.22311 1.01822 0.96652 0.89010 1.20338 0.79552 0.77674 0.90997 1.90668 1.66449 1.53540 1.33195 1.47432 1.32410 1.44489 1.09334 1.21696 0.97270 1.01365 0.86759 0.91816 0.90754 0.92026 0.88514 0.93133 0.90767 0.90488 0.96331 0.97056 0.92614 0.90163 0.87039 0.89427 0.92430 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.48 37.15 0.31 -1.19 16 2 C 0.14 1.70 3.56 -68.20 -0.24 1.46 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 4 C 0.04 0.52 3.96 -3.66 -0.01 0.50 16 5 N -0.54 -8.65 4.95 -236.08 -1.17 -9.82 16 6 C 0.06 1.18 5.28 -3.82 -0.02 1.16 16 7 C -0.05 -1.06 3.34 -27.88 -0.09 -1.15 16 8 C -0.52 -14.26 9.66 -34.44 -0.33 -14.60 16 9 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 10 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 12 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 16 C 0.03 0.54 5.43 -5.19 -0.03 0.51 16 17 C 0.53 8.75 7.57 -11.67 -0.09 8.66 16 18 O -0.56 -10.79 16.07 5.56 0.09 -10.70 16 19 N -0.60 -8.26 3.11 -174.80 -0.54 -8.80 16 20 C 0.07 0.79 9.60 59.85 0.57 1.37 16 21 H 0.06 0.49 6.94 -51.93 -0.36 0.13 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.10 1.28 8.06 -51.93 -0.42 0.86 16 25 H 0.05 0.80 6.94 -51.92 -0.36 0.44 16 26 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.02 0.42 5.70 -51.93 -0.30 0.12 16 29 H 0.01 0.26 5.85 -51.93 -0.30 -0.04 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.08 1.43 6.19 -51.93 -0.32 1.10 16 32 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 33 H 0.09 1.11 6.67 -51.93 -0.35 0.76 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.55 6.95 -51.93 -0.36 0.19 16 LS Contribution 275.23 15.07 4.15 4.15 Total: -1.00 -31.56 275.23 -6.71 -38.27 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.31 Total: -1.98 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.03 Total: -1.40 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.94 Total: -45.06 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.56 -6.71 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334975991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.055 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds