Wall clock time and date at job start Mon Mar 30 2020 20:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47345 * 2 1 4 4 C 1.50699 * 109.46871 * 240.00414 * 2 1 3 5 5 H 1.08005 * 119.99912 * 240.00294 * 4 2 1 6 6 C 1.37875 * 120.00388 * 59.99851 * 4 2 1 7 7 N 1.31516 * 119.99884 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00306 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46968 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46776 * 120.00030 * 8 6 4 11 11 H 1.48496 * 109.47324 * 240.00004 * 8 6 4 12 12 N 1.46901 * 109.47199 * 120.00201 * 2 1 3 13 13 C 1.46893 * 110.99826 * 274.99675 * 12 2 1 14 14 H 1.09002 * 110.06127 * 34.96727 * 13 12 2 15 15 C 1.54263 * 110.03469 * 273.54194 * 13 12 2 16 16 C 1.54885 * 104.19833 * 217.10850 * 15 13 12 17 17 C 1.54886 * 102.75187 * 37.94318 * 16 15 13 18 18 C 1.53879 * 110.02816 * 156.38013 * 13 12 2 19 19 H 1.09004 * 110.03079 * 238.56969 * 18 13 12 20 20 C 1.50697 * 110.03610 * 359.97438 * 18 13 12 21 21 N 1.34772 * 120.00507 * 263.96911 * 20 18 13 22 22 O 1.21282 * 119.99348 * 83.96622 * 20 18 13 23 23 H 1.09009 * 109.46953 * 299.99667 * 1 2 3 24 24 H 1.09000 * 109.47062 * 59.99402 * 1 2 3 25 25 H 1.08999 * 109.47345 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00389 * 180.02562 * 7 6 4 27 27 H 1.00899 * 110.99809 * 151.03973 * 12 2 1 28 28 H 1.09002 * 110.47962 * 98.42895 * 15 13 12 29 29 H 1.08998 * 110.48639 * 335.79175 * 15 13 12 30 30 H 1.09011 * 110.75585 * 279.62930 * 16 15 13 31 31 H 1.09002 * 110.91429 * 156.33569 * 16 15 13 32 32 H 1.09003 * 110.48391 * 80.73314 * 17 16 15 33 33 H 1.08998 * 110.49088 * 203.37847 * 17 16 15 34 34 H 0.97008 * 119.99524 * 0.02562 * 21 20 18 35 35 H 0.97000 * 120.00348 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 3.1473 -2.2862 -3.6040 10 1 1.1675 -1.5864 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3468 14 1 1.2616 0.9380 2.2998 15 6 3.4332 0.9677 2.3551 16 6 3.7986 1.0750 3.8564 17 6 3.3227 -0.2860 4.4223 18 6 2.0122 -0.5747 3.6611 19 1 1.1572 -0.2460 4.2519 20 6 1.9000 -2.0482 3.3659 21 7 0.6900 -2.6414 3.3466 22 8 2.8986 -2.7002 3.1456 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 0.7088 1.1616 -3.4844 27 1 2.9173 -1.1206 1.0286 28 1 3.3242 1.9598 1.9171 29 1 4.1888 0.3938 1.8187 30 1 3.2610 1.8983 4.3270 31 1 4.8743 1.1930 3.9876 32 1 4.0604 -1.0624 4.2196 33 1 3.1330 -0.2088 5.4928 34 1 -0.1088 -2.1197 3.5224 35 1 0.6177 -3.5898 3.1561 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379594332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:01 Heat of formation + Delta-G solvation = -79.563486 kcal Electronic energy + Delta-G solvation = -16462.786081 eV Core-core repulsion = 13879.652311 eV Total energy + Delta-G solvation = -2583.133771 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98352 -38.48427 -36.47719 -34.33526 -33.96022 -30.51700 -30.00255 -27.54720 -26.80797 -23.08847 -22.13408 -21.44736 -20.15385 -18.66137 -17.80715 -17.68062 -16.95324 -16.29280 -15.82837 -15.42159 -15.10235 -14.70657 -14.36848 -14.23592 -13.55411 -13.39014 -12.92063 -12.65696 -12.65330 -12.38749 -12.20958 -12.08279 -11.91499 -11.74769 -11.54733 -11.46923 -10.88493 -10.65340 -10.57515 -10.33375 -8.98491 -8.15095 -6.27541 1.36786 1.39134 1.50918 1.98953 2.39402 2.92293 3.13315 3.50261 3.76902 3.84734 4.13385 4.45235 4.54646 4.57472 4.58799 4.68035 4.80606 4.89558 5.04754 5.09844 5.15039 5.19160 5.24893 5.31511 5.49507 5.53478 5.68804 5.89835 6.16356 6.24780 6.46714 6.74401 6.80559 6.97078 7.42527 7.65902 8.90147 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031511 B = 0.007995 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.377568 B = 3501.518728 C = 3737.424846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.219 3.781 3 H -0.026 1.026 4 C -0.535 4.535 5 H 0.046 0.954 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.279 1.279 12 N -0.676 5.676 13 C 0.092 3.908 14 H 0.080 0.920 15 C -0.151 4.151 16 C -0.108 4.108 17 C -0.110 4.110 18 C -0.102 4.102 19 H 0.119 0.881 20 C 0.549 3.451 21 N -0.837 5.837 22 O -0.600 6.600 23 H 0.029 0.971 24 H 0.054 0.946 25 H 0.025 0.975 26 H 0.262 0.738 27 H 0.326 0.674 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.411 0.589 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 0.011 14.029 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 H -0.009 1.009 4 C -0.574 4.574 5 H 0.064 0.936 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.205 1.205 12 N -0.306 5.306 13 C -0.019 4.019 14 H 0.099 0.901 15 C -0.191 4.191 16 C -0.146 4.146 17 C -0.148 4.148 18 C -0.124 4.124 19 H 0.137 0.863 20 C 0.335 3.665 21 N -0.398 5.398 22 O -0.482 6.482 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.241 0.759 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.791 -0.377 13.932 13.960 hybrid contribution 0.572 -0.002 -1.608 1.707 sum -0.219 -0.379 12.324 12.332 Atomic orbital electron populations 1.21504 0.97271 0.98719 0.99206 1.18870 0.92810 0.90759 0.86475 1.00870 1.21578 1.31373 1.12312 0.92129 0.93621 1.25619 0.95246 0.95688 1.01651 1.70005 1.37432 1.23816 1.24015 0.85549 0.78208 0.78559 0.79545 1.19903 1.20279 1.20463 1.60758 1.32056 1.32213 1.05526 1.22229 0.97028 0.92692 0.89989 0.90138 1.23054 0.97351 1.00120 0.98543 1.22390 1.01578 0.97429 0.93201 1.22348 0.94984 0.97543 0.99892 1.22087 1.01796 0.91205 0.97360 0.86333 1.20371 0.82952 0.89740 0.73418 1.43618 1.08509 1.13877 1.73766 1.90632 1.38344 1.67109 1.52072 0.95219 0.92741 0.95565 0.92832 0.85623 0.92360 0.93689 0.89316 0.90759 0.92340 0.88770 0.75940 0.77118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.23 9.18 71.98 0.66 -4.57 16 2 C 0.22 11.10 2.44 44.17 0.11 11.20 16 3 H -0.03 -1.46 7.73 -2.39 -0.02 -1.48 16 4 C -0.54 -30.29 8.59 25.60 0.22 -30.07 16 5 H 0.05 2.65 7.62 -2.91 -0.02 2.63 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.91 -52.57 11.32 21.45 0.24 -52.33 16 8 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.68 -28.82 4.50 -469.61 -2.11 -30.93 16 13 C 0.09 3.09 2.99 45.64 0.14 3.23 16 14 H 0.08 2.70 7.17 -2.39 -0.02 2.68 16 15 C -0.15 -4.86 6.29 31.67 0.20 -4.66 16 16 C -0.11 -2.53 6.91 31.88 0.22 -2.31 16 17 C -0.11 -2.67 6.32 31.67 0.20 -2.47 16 18 C -0.10 -2.75 3.29 -10.81 -0.04 -2.79 16 19 H 0.12 2.33 8.13 -2.38 -0.02 2.31 16 20 C 0.55 17.51 5.70 87.66 0.50 18.01 16 21 N -0.84 -20.69 8.87 -173.54 -1.54 -22.23 16 22 O -0.60 -24.46 16.39 -3.04 -0.05 -24.51 16 23 H 0.03 1.22 7.45 -2.38 -0.02 1.20 16 24 H 0.05 2.91 6.07 -2.39 -0.01 2.90 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.33 15.41 7.35 -89.69 -0.66 14.75 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.65 7.58 -2.39 -0.02 1.63 16 30 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.75 6.93 -2.39 -0.02 1.73 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.41 7.69 8.82 -92.70 -0.82 6.87 16 35 H 0.40 9.38 8.93 -92.71 -0.83 8.55 16 Total: -1.00 -66.93 281.74 0.03 -66.90 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -1.20 Total: 29.36 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 2.66 Total: -13.01 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -3.41 Total: -105.49 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.93 0.03 -66.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379594332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.661 kcal (2) G-P(sol) polarization free energy of solvation -66.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds