Wall clock time and date at job start Mon Mar 30 2020 20:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47212 * 2 1 4 4 C 1.50699 * 109.47178 * 239.99556 * 2 1 3 5 5 H 1.08001 * 120.00080 * 240.00631 * 4 2 1 6 6 C 1.37875 * 119.99814 * 60.00175 * 4 2 1 7 7 N 1.31519 * 120.00035 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99864 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47139 * 60.00121 * 8 6 4 10 10 H 1.48510 * 109.47056 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47039 * 299.99891 * 8 6 4 12 12 N 1.46901 * 109.47015 * 119.99728 * 2 1 3 13 13 C 1.46900 * 110.99996 * 274.99992 * 12 2 1 14 14 H 1.08999 * 110.05430 * 34.96364 * 13 12 2 15 15 C 1.53869 * 110.03244 * 273.54583 * 13 12 2 16 16 C 1.54270 * 106.63967 * 240.69040 * 15 13 12 17 17 C 1.54961 * 104.16191 * 336.44607 * 16 15 13 18 18 C 1.54268 * 110.03156 * 156.37640 * 13 12 2 19 19 H 1.09000 * 110.48806 * 24.08568 * 18 13 12 20 20 C 1.50695 * 110.49105 * 261.57570 * 18 13 12 21 21 N 1.34774 * 120.00284 * 180.02562 * 20 18 13 22 22 O 1.21284 * 119.99675 * 359.97438 * 20 18 13 23 23 H 1.09001 * 109.47091 * 60.00411 * 1 2 3 24 24 H 1.09004 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47294 * 300.00373 * 1 2 3 26 26 H 0.96998 * 119.99794 * 180.02562 * 7 6 4 27 27 H 1.00901 * 111.00168 * 38.95019 * 12 2 1 28 28 H 1.09002 * 110.03268 * 0.02562 * 15 13 12 29 29 H 1.08995 * 110.03391 * 121.38432 * 15 13 12 30 30 H 1.08997 * 110.48585 * 95.09409 * 16 15 13 31 31 H 1.09002 * 110.48442 * 217.73292 * 16 15 13 32 32 H 1.09001 * 110.71970 * 279.57802 * 17 16 15 33 33 H 1.08991 * 110.92569 * 156.29385 * 17 16 15 34 34 H 0.96997 * 120.00193 * 359.97438 * 21 20 18 35 35 H 0.97002 * 120.00042 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5205 -4.0075 10 1 1.8260 -0.4209 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 1 1.2615 0.9382 2.2997 15 6 3.4297 0.9660 2.3551 16 6 4.1314 0.5938 3.6776 17 6 2.9722 0.1775 4.6179 18 6 2.0119 -0.5764 3.6646 19 1 2.3519 -1.6002 3.5086 20 6 0.6084 -0.5661 4.2133 21 7 0.3300 -1.2094 5.3644 22 8 -0.2705 0.0220 3.6194 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7082 1.1607 -3.4844 27 1 1.4495 -1.4978 1.4102 28 1 4.0368 0.6480 1.5075 29 1 3.2626 2.0422 2.3111 30 1 4.8164 -0.2400 3.5245 31 1 4.6622 1.4551 4.0833 32 1 2.4850 1.0557 5.0417 33 1 3.3297 -0.4830 5.4077 34 1 1.0330 -1.6794 5.8395 35 1 -0.5735 -1.2030 5.7173 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379594333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:02 Heat of formation + Delta-G solvation = -81.390120 kcal Electronic energy + Delta-G solvation = -16269.414007 eV Core-core repulsion = 13686.201028 eV Total energy + Delta-G solvation = -2583.212980 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.09825 -38.65048 -36.60852 -34.67241 -33.93043 -30.52237 -29.98926 -27.31483 -26.97639 -23.27611 -22.53378 -20.93479 -20.35876 -18.66581 -18.21514 -17.74334 -16.71181 -16.64387 -15.85851 -15.59194 -15.13644 -14.73748 -14.45147 -14.10328 -13.77070 -13.22803 -13.02284 -12.83240 -12.71015 -12.34717 -12.19150 -12.06517 -11.89580 -11.80755 -11.58378 -11.36179 -11.01216 -10.82337 -10.62865 -10.48075 -8.96563 -8.08146 -6.20689 1.42699 1.45795 1.53429 1.66365 2.44435 2.62278 3.19482 3.53890 3.64082 3.76844 4.10468 4.37878 4.50118 4.57862 4.60996 4.72380 4.83555 4.86846 4.91985 5.05817 5.12014 5.21148 5.29141 5.34966 5.46342 5.54254 5.67221 5.83494 5.94322 6.28158 6.50545 6.65052 6.84124 6.94766 7.41118 7.49257 8.97928 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036434 B = 0.007234 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.331951 B = 3869.773467 C = 4267.322776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.222 3.778 3 H -0.004 1.004 4 C -0.515 4.515 5 H 0.059 0.941 6 C 0.004 3.996 7 N -0.927 5.927 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.669 5.669 13 C 0.088 3.912 14 H 0.019 0.981 15 C -0.118 4.118 16 C -0.108 4.108 17 C -0.097 4.097 18 C -0.112 4.112 19 H 0.125 0.875 20 C 0.516 3.484 21 N -0.830 5.830 22 O -0.594 6.594 23 H 0.059 0.941 24 H 0.024 0.976 25 H 0.013 0.987 26 H 0.260 0.740 27 H 0.323 0.677 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.420 0.580 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.841 -4.612 17.913 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.113 3.887 3 H 0.014 0.986 4 C -0.553 4.553 5 H 0.078 0.922 6 C -0.194 4.194 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.298 5.298 13 C -0.022 4.022 14 H 0.037 0.963 15 C -0.157 4.157 16 C -0.145 4.145 17 C -0.135 4.135 18 C -0.134 4.134 19 H 0.142 0.858 20 C 0.302 3.698 21 N -0.394 5.394 22 O -0.474 6.474 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.140 0.860 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.251 0.749 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.016 -4.001 17.120 18.283 hybrid contribution -1.295 -0.100 -0.749 1.499 sum 3.721 -4.100 16.370 17.281 Atomic orbital electron populations 1.22179 1.00845 0.98506 0.99313 1.18857 0.89241 0.92586 0.88027 0.98558 1.21449 1.30455 1.12525 0.90914 0.92230 1.25829 0.95440 0.95899 1.02212 1.70050 1.38127 1.24549 1.24005 0.85493 0.78764 0.78551 0.78061 1.19555 1.21096 1.19479 1.61026 1.56526 1.08945 1.03267 1.22064 0.96674 0.94080 0.89429 0.96295 1.22187 0.95653 0.98146 0.99713 1.22288 0.97207 1.02169 0.92842 1.22449 0.94265 0.99960 0.96802 1.22351 0.92084 1.03180 0.95744 0.85760 1.20907 0.90846 0.77136 0.80961 1.43606 1.15859 1.55418 1.24563 1.90771 1.50139 1.45895 1.60569 0.92224 0.95662 0.96822 0.93067 0.86012 0.92577 0.93638 0.90081 0.89876 0.91546 0.86731 0.74867 0.76327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.27 8.92 71.98 0.64 -7.63 16 2 C 0.22 12.24 2.41 44.17 0.11 12.35 16 3 H 0.00 -0.22 7.72 -2.39 -0.02 -0.24 16 4 C -0.51 -30.08 8.84 25.60 0.23 -29.86 16 5 H 0.06 3.42 7.81 -2.91 -0.02 3.39 16 6 C 0.00 0.22 5.30 84.65 0.45 0.67 16 7 N -0.93 -56.70 11.32 21.45 0.24 -56.46 16 8 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.67 -30.10 5.88 -469.61 -2.76 -32.86 16 13 C 0.09 3.39 2.41 45.64 0.11 3.50 16 14 H 0.02 0.89 5.87 -2.39 -0.01 0.87 16 15 C -0.12 -4.05 6.38 31.32 0.20 -3.85 16 16 C -0.11 -2.38 6.84 31.70 0.22 -2.16 16 17 C -0.10 -1.80 6.31 31.91 0.20 -1.60 16 18 C -0.11 -2.95 2.68 -10.46 -0.03 -2.98 16 19 H 0.12 2.87 7.98 -2.39 -0.02 2.86 16 20 C 0.52 14.59 7.40 87.66 0.65 15.24 16 21 N -0.83 -13.43 8.86 -173.54 -1.54 -14.97 16 22 O -0.59 -24.20 16.26 -3.04 -0.05 -24.25 16 23 H 0.06 3.60 6.07 -2.39 -0.01 3.58 16 24 H 0.02 1.32 8.13 -2.38 -0.02 1.30 16 25 H 0.01 0.71 7.45 -2.39 -0.02 0.69 16 26 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.32 14.08 8.09 -89.69 -0.73 13.35 16 28 H 0.06 2.20 7.92 -2.39 -0.02 2.18 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.29 8.05 -2.39 -0.02 1.27 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.42 3.39 8.83 -92.71 -0.82 2.57 16 35 H 0.41 5.90 8.93 -92.71 -0.83 5.07 16 Total: -1.00 -75.26 284.41 -0.57 -75.83 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -1.26 Total: 21.45 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 2.77 Total: -16.31 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -4.06 Total: -104.29 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.05 Total: -24.25 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -75.26 -0.57 -75.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379594333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.560 kcal (2) G-P(sol) polarization free energy of solvation -75.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds