Wall clock time and date at job start Mon Mar 30 2020 20:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34784 * 119.99654 * 2 1 4 4 O 1.21272 * 120.00366 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99431 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46770 * 179.97438 * 5 3 2 7 7 C 1.53935 * 113.73242 * 174.99883 * 6 5 3 8 8 N 1.47962 * 86.30001 * 138.02883 * 7 6 5 9 9 C 1.46897 * 111.00037 * 222.47236 * 8 7 6 10 10 H 1.09001 * 109.46790 * 55.00290 * 9 8 7 11 11 C 1.52994 * 109.47213 * 294.99933 * 9 8 7 12 12 C 1.50705 * 109.46915 * 175.00132 * 9 8 7 13 13 H 1.07993 * 119.99852 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99569 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00383 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99738 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47359 * 59.99440 * 16 14 12 18 18 H 1.48501 * 109.47144 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46907 * 299.99842 * 16 14 12 20 20 C 1.48187 * 90.67343 * 335.41160 * 8 7 6 21 21 H 1.08992 * 109.47388 * 59.99495 * 1 2 3 22 22 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46847 * 299.99448 * 1 2 3 24 24 H 0.96994 * 120.00369 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47000 * 60.00584 * 5 3 2 26 26 H 1.08992 * 109.47458 * 300.00400 * 5 3 2 27 27 H 1.09003 * 113.00717 * 43.37398 * 6 5 3 28 28 H 1.09002 * 113.76229 * 252.40280 * 7 6 5 29 29 H 1.09005 * 113.75703 * 23.65805 * 7 6 5 30 30 H 1.09006 * 109.46939 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.47534 * 299.99902 * 11 9 8 32 32 H 1.09006 * 109.47174 * 60.00381 * 11 9 8 33 33 H 0.97001 * 119.99769 * 180.02562 * 15 14 12 34 34 H 1.09005 * 113.65869 * 270.26633 * 20 8 7 35 35 H 1.09002 * 113.92722 * 138.95266 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1558 2.6098 -0.0011 7 6 5.6859 2.7260 0.1211 8 7 5.5918 3.7841 -0.9089 9 6 6.6631 3.6464 -1.9044 10 1 6.6374 2.6430 -2.3294 11 6 8.0173 3.8811 -1.2322 12 6 6.4638 4.6614 -3.0005 13 1 5.6249 5.3404 -2.9615 14 6 7.3518 4.7223 -4.0534 15 7 8.3731 3.8951 -4.1010 16 14 7.1052 5.9809 -5.4116 17 1 7.1411 7.3478 -4.8323 18 1 8.1882 5.8417 -6.4181 19 1 5.7904 5.7541 -6.0638 20 6 4.3217 3.2079 -1.4097 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.9500 -0.8400 -0.0004 25 1 4.0088 0.6537 -0.8909 26 1 4.0095 0.6532 0.8890 27 1 3.6105 3.2547 0.6880 28 1 6.0227 3.0876 1.0927 29 1 6.2218 1.8366 -0.2106 30 1 8.8122 3.7794 -1.9711 31 1 8.0430 4.8846 -0.8072 32 1 8.1615 3.1470 -0.4394 33 1 8.9981 3.9383 -4.8416 34 1 4.4586 2.4602 -2.1910 35 1 3.5673 3.9531 -1.6620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382398979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:05 Heat of formation + Delta-G solvation = -34.134202 kcal Electronic energy + Delta-G solvation = -15774.008090 eV Core-core repulsion = 13192.844281 eV Total energy + Delta-G solvation = -2581.163809 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22837 -40.00799 -35.77336 -35.50409 -33.16073 -31.00092 -27.98604 -27.62563 -26.27035 -25.42541 -22.04156 -21.14499 -20.41242 -18.42331 -18.18309 -17.14359 -16.80883 -16.52531 -16.19080 -15.50303 -15.15792 -14.81814 -14.37050 -13.99829 -13.61956 -13.44179 -13.17387 -13.06490 -12.91597 -12.74541 -12.51649 -12.33339 -12.21153 -11.89271 -11.49370 -11.11877 -10.92532 -10.82769 -10.53607 -10.08108 -9.35810 -8.13348 -6.25107 1.39417 1.41334 1.49349 1.69691 2.34700 2.41106 3.13654 3.34139 3.57912 3.89328 3.99413 4.43129 4.49511 4.59462 4.62926 4.64492 4.71885 4.77076 4.82210 4.86122 4.94032 4.97061 5.04007 5.08452 5.39743 5.46564 5.51522 5.53650 5.70356 6.11867 6.29372 6.61252 6.62142 6.87075 7.33687 7.43755 8.91944 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.005857 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.720904 B = 4779.588542 C = 5174.585511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.727 5.727 3 C 0.508 3.492 4 O -0.585 6.585 5 C -0.125 4.125 6 C -0.083 4.083 7 C 0.010 3.990 8 N -0.500 5.500 9 C 0.186 3.814 10 H -0.021 1.021 11 C -0.120 4.120 12 C -0.523 4.523 13 H 0.044 0.956 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.957 3.043 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.275 1.275 20 C 0.022 3.978 21 H 0.042 0.958 22 H 0.112 0.888 23 H 0.049 0.951 24 H 0.420 0.580 25 H 0.105 0.895 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.053 0.947 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 -12.093 8.670 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.380 5.380 3 C 0.296 3.704 4 O -0.465 6.465 5 C -0.165 4.165 6 C -0.102 4.102 7 C -0.119 4.119 8 N -0.223 5.223 9 C 0.079 3.921 10 H -0.003 1.003 11 C -0.179 4.179 12 C -0.562 4.562 13 H 0.062 0.938 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.782 3.218 17 H -0.200 1.200 18 H -0.203 1.203 19 H -0.200 1.200 20 C -0.107 4.107 21 H 0.061 0.939 22 H 0.130 0.870 23 H 0.068 0.932 24 H 0.256 0.744 25 H 0.123 0.877 26 H 0.150 0.850 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.465 -10.708 8.724 17.329 hybrid contribution 0.292 -0.288 -1.345 1.407 sum -10.173 -10.996 7.379 16.699 Atomic orbital electron populations 1.21637 0.79228 1.04088 1.01120 1.45781 1.08257 1.08728 1.75189 1.21106 0.91101 0.83568 0.74647 1.90695 1.71455 1.33256 1.51077 1.21710 0.90442 0.97733 1.06577 1.22622 0.95194 0.95830 0.96576 1.23905 0.95235 0.94778 0.97973 1.68533 1.03293 1.40080 1.10355 1.19554 0.89312 0.93723 0.89541 1.00304 1.21591 0.99726 0.98102 0.98449 1.21294 1.10485 1.18159 1.06238 0.93778 1.25655 0.94855 0.97792 1.00112 1.69982 1.14797 1.38510 1.32362 0.85634 0.77760 0.79547 0.78810 1.19985 1.20279 1.19990 1.23668 0.93411 0.97335 0.96315 0.93892 0.86988 0.93239 0.74361 0.87662 0.84997 0.89017 0.89140 0.91275 0.92002 0.95643 0.94686 0.92784 0.92895 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.70 127.77 1.37 2.61 16 2 N -0.73 -12.10 5.71 -484.52 -2.77 -14.87 16 3 C 0.51 12.90 7.83 87.66 0.69 13.59 16 4 O -0.58 -20.85 15.75 -3.01 -0.05 -20.90 16 5 C -0.12 -2.79 5.55 29.85 0.17 -2.62 16 6 C -0.08 -2.65 3.34 -10.15 -0.03 -2.68 16 7 C 0.01 0.34 6.40 86.41 0.55 0.89 16 8 N -0.50 -22.76 5.97 -883.91 -5.28 -28.04 16 9 C 0.19 9.82 1.66 44.17 0.07 9.89 16 10 H -0.02 -1.16 7.68 -2.39 -0.02 -1.18 16 11 C -0.12 -6.06 8.95 71.98 0.64 -5.41 16 12 C -0.52 -30.54 8.46 25.60 0.22 -30.33 16 13 H 0.04 2.65 7.81 -2.91 -0.02 2.62 16 14 C 0.01 0.84 5.30 84.65 0.45 1.29 16 15 N -0.92 -53.49 11.32 21.45 0.24 -53.24 16 16 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 17 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 20 C 0.02 0.91 7.19 86.36 0.62 1.53 16 21 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.42 3.79 8.83 -92.71 -0.82 2.97 16 25 H 0.11 2.18 7.84 -2.39 -0.02 2.16 16 26 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.09 3.14 7.67 -2.39 -0.02 3.13 16 28 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.07 2.27 7.80 -2.38 -0.02 2.25 16 30 H 0.06 3.39 6.07 -2.38 -0.01 3.38 16 31 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 1.50 7.33 -2.38 -0.02 1.49 16 33 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.05 2.24 7.45 -2.38 -0.02 2.22 16 35 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -72.56 288.79 -0.83 -73.39 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.25 Total: 7.54 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.74 Total: -11.24 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -7.81 Total: -96.15 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -72.56 -0.83 -73.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382398979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.255 kcal (2) G-P(sol) polarization free energy of solvation -72.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds