Wall clock time and date at job start Mon Mar 30 2020 20:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46948 * 2 1 4 4 C 1.36932 * 119.99966 * 263.78721 * 3 2 1 5 5 H 1.08006 * 120.00520 * 142.61448 * 4 3 2 6 6 C 1.38817 * 119.99981 * 322.61588 * 4 3 2 7 7 N 1.31616 * 120.00025 * 157.39076 * 6 4 3 8 8 Si 1.86799 * 119.99801 * 337.38429 * 6 4 3 9 9 H 1.48503 * 109.46914 * 95.71640 * 8 6 4 10 10 H 1.48495 * 109.47255 * 215.71831 * 8 6 4 11 11 H 1.48503 * 109.47350 * 335.71819 * 8 6 4 12 12 C 1.46504 * 120.00047 * 83.78247 * 3 2 1 13 13 C 1.53001 * 109.46591 * 90.00149 * 12 3 2 14 14 C 1.53005 * 109.46702 * 179.97438 * 13 12 3 15 15 H 1.08997 * 110.43580 * 54.30224 * 14 13 12 16 16 C 1.54630 * 110.48511 * 176.84114 * 14 13 12 17 17 C 1.54486 * 101.76314 * 93.88131 * 16 14 13 18 18 N 1.46760 * 105.47540 * 25.41897 * 17 16 14 19 19 C 1.34750 * 111.34688 * 343.01476 * 18 17 16 20 20 O 1.21286 * 125.11916 * 180.38014 * 19 18 17 21 21 H 1.08997 * 109.46829 * 60.00498 * 1 2 3 22 22 H 1.08997 * 109.47469 * 300.00235 * 1 2 3 23 23 H 1.09004 * 109.46651 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46935 * 119.99436 * 2 1 3 25 25 H 1.08997 * 109.47469 * 239.99765 * 2 1 3 26 26 H 0.96999 * 119.99827 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46959 * 209.99994 * 12 3 2 28 28 H 1.08996 * 109.47283 * 330.00136 * 12 3 2 29 29 H 1.09000 * 109.47722 * 299.99840 * 13 12 3 30 30 H 1.09004 * 109.47433 * 60.00263 * 13 12 3 31 31 H 1.08996 * 110.96921 * 211.99983 * 16 14 13 32 32 H 1.08995 * 110.97017 * 335.76282 * 16 14 13 33 33 H 1.09005 * 110.24437 * 144.41397 * 17 16 14 34 34 H 1.09002 * 110.24408 * 266.32630 * 17 16 14 35 35 H 0.96997 * 124.35502 * 162.98395 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3675 1.9840 -1.1789 5 1 2.1496 3.0301 -1.3360 6 6 3.0016 1.2504 -2.1723 7 7 2.9450 1.6519 -3.4245 8 14 3.9355 -0.3062 -1.7318 9 1 3.0564 -1.4855 -1.9367 10 1 5.1349 -0.4262 -2.5990 11 1 4.3574 -0.2447 -0.3093 12 6 2.1329 2.1177 1.2613 13 6 3.5249 1.8960 1.8565 14 6 3.6448 2.6657 3.1734 15 1 2.8342 2.3926 3.8490 16 6 5.0156 2.3948 3.8356 17 6 5.8594 3.5763 3.3077 18 7 4.8957 4.6408 3.0040 19 6 3.6412 4.1567 2.9176 20 8 2.6540 4.8167 2.6708 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 0.8901 25 1 1.8934 -0.5138 -0.8899 26 1 3.3884 1.1395 -4.1185 27 1 1.9820 3.1812 1.0760 28 1 1.3774 1.7600 1.9608 29 1 3.6758 0.8326 2.0417 30 1 4.2804 2.2538 1.1569 31 1 4.9369 2.4264 4.9222 32 1 5.4278 1.4420 3.5034 33 1 6.5612 3.9098 4.0722 34 1 6.3963 3.2830 2.4056 35 1 5.1312 5.5737 2.8816 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395391397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:43 Heat of formation + Delta-G solvation = -22.522071 kcal Electronic energy + Delta-G solvation = -16308.822275 eV Core-core repulsion = 13728.162006 eV Total energy + Delta-G solvation = -2580.660269 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19838 -36.43744 -36.10376 -33.00962 -31.61034 -30.01842 -28.45329 -26.35003 -23.65025 -22.67898 -21.70972 -20.07908 -19.58399 -17.20248 -16.60151 -15.76413 -15.34850 -14.99748 -14.38822 -13.89365 -13.49254 -13.21277 -13.17273 -12.68070 -12.44459 -12.36547 -11.87276 -11.81518 -11.52475 -11.22424 -10.87144 -10.68183 -10.64572 -10.29340 -10.00732 -9.66729 -9.44663 -9.32994 -8.97191 -8.46171 -6.75488 -5.93117 -3.32478 2.87369 3.33842 3.47512 3.51046 3.52636 4.49771 4.53721 4.57438 4.81989 5.05353 5.17935 5.37890 5.44357 5.63231 5.72445 5.81409 5.97283 6.03295 6.07364 6.19002 6.34201 6.43206 6.46560 6.58882 6.85361 6.86761 6.96293 7.02289 7.13530 7.20332 8.13900 8.47046 8.48261 9.08169 9.79221 10.21370 11.23112 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.008789 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.960275 B = 3184.886652 C = 3399.765539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.606 5.606 4 C -0.261 4.261 5 H 0.077 0.923 6 C 0.032 3.968 7 N -0.903 5.903 8 Si 0.877 3.123 9 H -0.288 1.288 10 H -0.304 1.304 11 H -0.268 1.268 12 C 0.147 3.853 13 C -0.122 4.122 14 C -0.122 4.122 15 H 0.100 0.900 16 C -0.132 4.132 17 C 0.103 3.897 18 N -0.739 5.739 19 C 0.527 3.473 20 O -0.526 6.526 21 H 0.058 0.942 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.032 0.968 25 H 0.056 0.944 26 H 0.262 0.738 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 -0.627 15.085 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 N -0.328 5.328 4 C -0.390 4.390 5 H 0.095 0.905 6 C -0.168 4.168 7 N -0.544 5.544 8 Si 0.707 3.293 9 H -0.216 1.216 10 H -0.232 1.232 11 H -0.193 1.193 12 C 0.021 3.979 13 C -0.163 4.163 14 C -0.144 4.144 15 H 0.119 0.881 16 C -0.169 4.169 17 C -0.021 4.021 18 N -0.395 5.395 19 C 0.314 3.686 20 O -0.401 6.401 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.139 -0.417 14.781 15.655 hybrid contribution 0.899 -0.556 0.013 1.057 sum 6.039 -0.973 14.794 16.009 Atomic orbital electron populations 1.22254 0.99124 0.99289 1.01683 1.21120 0.92583 0.86892 0.98870 1.44189 1.74495 1.11156 1.02977 1.18821 1.32722 0.97067 0.90354 0.90539 1.25493 0.98044 0.97927 0.95301 1.69889 1.44479 1.40740 0.99328 0.86912 0.79930 0.83979 0.78473 1.21561 1.23177 1.19270 1.20972 0.92237 0.97439 0.87225 1.22166 1.02731 0.98617 0.92781 1.22054 0.98697 0.93238 1.00434 0.88145 1.22694 0.94997 0.98819 1.00432 1.22006 0.91802 0.87815 1.00504 1.46265 1.08455 1.10932 1.73868 1.20966 0.82580 0.90305 0.74777 1.90741 1.35803 1.65413 1.48138 0.92307 0.93799 0.94370 0.94944 0.92624 0.92868 0.91994 0.94295 0.91767 0.91346 0.90408 0.89174 0.90774 0.91042 0.75597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 10.23 37.16 0.38 -2.86 16 2 C 0.13 2.91 5.01 -4.04 -0.02 2.89 16 3 N -0.61 -14.83 2.08 -173.23 -0.36 -15.19 16 4 C -0.26 -7.51 9.91 -15.06 -0.15 -7.66 16 5 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 6 C 0.03 0.94 5.26 -17.43 -0.09 0.85 16 7 N -0.90 -28.10 13.97 55.49 0.78 -27.33 16 8 Si 0.88 22.29 25.05 -169.99 -4.26 18.03 16 9 H -0.29 -7.16 6.69 56.52 0.38 -6.78 16 10 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.15 3.11 5.52 -4.04 -0.02 3.09 16 13 C -0.12 -2.18 4.94 -26.73 -0.13 -2.31 16 14 C -0.12 -1.72 2.95 -90.63 -0.27 -1.99 16 15 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.13 -1.32 6.71 -25.09 -0.17 -1.49 16 17 C 0.10 1.01 7.78 -3.12 -0.02 0.99 16 18 N -0.74 -9.29 6.25 -59.12 -0.37 -9.66 16 19 C 0.53 8.62 7.38 -10.71 -0.08 8.54 16 20 O -0.53 -10.79 16.84 5.55 0.09 -10.70 16 21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 22 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.03 0.64 8.12 -51.92 -0.42 0.22 16 25 H 0.06 1.35 3.60 -51.93 -0.19 1.17 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.06 1.45 6.58 -51.93 -0.34 1.11 16 28 H 0.04 0.75 8.05 -51.93 -0.42 0.33 16 29 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.85 7.90 -51.93 -0.41 0.44 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 4.43 8.96 -40.82 -0.37 4.07 16 LS Contribution 283.61 15.07 4.27 4.27 Total: -1.00 -33.63 283.61 -5.95 -39.58 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.53 Total: 0.96 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.57 Total: 0.04 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.04 Total: -52.18 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.26 Total: 18.03 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.63 -5.95 -39.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395391397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.053 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds