Wall clock time and date at job start Mon Mar 30 2020 20:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46496 * 2 1 4 4 C 1.52997 * 109.46913 * 240.00193 * 2 1 3 5 5 N 1.46897 * 109.47280 * 64.99680 * 4 2 1 6 6 C 1.47840 * 111.00026 * 69.15785 * 5 4 2 7 7 C 1.54909 * 104.79895 * 146.35941 * 6 5 4 8 8 C 1.55140 * 101.65168 * 322.93379 * 7 6 5 9 9 H 1.09003 * 110.85348 * 277.19271 * 8 7 6 10 10 C 1.50708 * 110.70503 * 154.03381 * 8 7 6 11 11 H 1.07991 * 119.99789 * 246.40277 * 10 8 7 12 12 C 1.37877 * 120.00008 * 66.39588 * 10 8 7 13 13 N 1.31514 * 120.00089 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99938 * 0.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.47451 * 111.00022 * 189.99906 * 5 4 2 19 19 C 1.50696 * 109.47260 * 119.99759 * 2 1 3 20 20 N 1.34773 * 120.00452 * 300.00263 * 19 2 1 21 21 O 1.21286 * 119.99863 * 119.99807 * 19 2 1 22 22 H 1.09000 * 109.47576 * 59.99690 * 1 2 3 23 23 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47075 * 299.99999 * 1 2 3 25 25 H 1.09004 * 109.47055 * 304.99674 * 4 2 1 26 26 H 1.09004 * 109.47149 * 185.00015 * 4 2 1 27 27 H 1.08997 * 110.37792 * 265.19515 * 6 5 4 28 28 H 1.09006 * 110.37227 * 27.53376 * 6 5 4 29 29 H 1.08993 * 110.99345 * 204.83648 * 7 6 5 30 30 H 1.09010 * 110.98393 * 81.02117 * 7 6 5 31 31 H 0.96997 * 119.99848 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.88424 * 117.33671 * 18 5 4 33 33 H 1.08998 * 109.88443 * 356.15098 * 18 5 4 34 34 H 0.97008 * 119.99978 * 359.97438 * 20 19 2 35 35 H 0.96996 * 120.00379 * 179.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6513 0.0374 -2.4456 6 6 2.3937 1.3132 -2.5284 7 6 2.5976 1.5547 -4.0449 8 6 2.8432 0.1127 -4.5616 9 1 3.8842 -0.1781 -4.4204 10 6 2.4502 -0.0079 -6.0115 11 1 1.6148 -0.6310 -6.2945 12 6 3.1573 0.6772 -6.9767 13 7 2.8141 0.5724 -8.2419 14 14 4.6027 1.7545 -6.4872 15 1 4.1227 3.1330 -6.2141 16 1 5.5937 1.7855 -7.5928 17 1 5.2411 1.2015 -5.2658 18 6 1.9133 -0.7386 -3.6717 19 6 2.0324 -0.7103 1.2304 20 7 1.7068 -0.2499 2.4545 21 8 2.7297 -1.6965 1.1192 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6054 -1.7198 -1.2951 26 1 3.1263 -0.7994 -1.2056 27 1 1.8086 2.1219 -2.0906 28 1 3.3568 1.2251 -2.0254 29 1 3.4661 2.1878 -4.2262 30 1 1.7026 1.9839 -4.4956 31 1 3.3118 1.0541 -8.9210 32 1 0.9768 -0.9340 -4.1940 33 1 2.4021 -1.6792 -3.4177 34 1 1.1494 0.5390 2.5436 35 1 2.0299 -0.7074 3.2465 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397582487.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:46 Heat of formation + Delta-G solvation = -72.424704 kcal Electronic energy + Delta-G solvation = -15994.290791 eV Core-core repulsion = 13411.466581 eV Total energy + Delta-G solvation = -2582.824210 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.93414 -39.65633 -35.84403 -34.82852 -34.06622 -31.64908 -30.13779 -27.35165 -25.84861 -24.26946 -22.07928 -21.24992 -20.53852 -19.02634 -18.27129 -17.85140 -16.76996 -16.48317 -16.18249 -15.71354 -15.09782 -14.82442 -14.58176 -14.22069 -14.05652 -13.83545 -13.12105 -13.02760 -12.86199 -12.63029 -12.45322 -11.95698 -11.88091 -11.80359 -11.54544 -11.36999 -11.12182 -10.86352 -10.71597 -10.63454 -9.21015 -8.29620 -6.33266 1.31155 1.35197 1.44947 1.64457 2.33489 2.51445 3.04979 3.23734 3.73438 3.93253 4.01747 4.12097 4.22008 4.35836 4.48753 4.50164 4.71200 4.76865 4.81994 4.88824 5.02427 5.03941 5.13850 5.22801 5.33811 5.48434 5.50144 5.71241 5.92511 6.05909 6.19699 6.32191 6.47732 6.72246 7.31669 7.37150 8.87326 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052798 B = 0.006037 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.197047 B = 4637.098369 C = 4744.628797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.117 0.883 4 C 0.070 3.930 5 N -0.522 5.522 6 C 0.047 3.953 7 C -0.132 4.132 8 C -0.010 4.010 9 H 0.024 0.976 10 C -0.512 4.512 11 H 0.034 0.966 12 C 0.014 3.986 13 N -0.950 5.950 14 Si 0.943 3.057 15 H -0.258 1.258 16 H -0.294 1.294 17 H -0.252 1.252 18 C 0.066 3.934 19 C 0.521 3.479 20 N -0.832 5.832 21 O -0.597 6.597 22 H 0.074 0.926 23 H 0.046 0.954 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.266 0.734 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.419 0.581 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 4.446 22.157 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.135 0.865 4 C -0.059 4.059 5 N -0.246 5.246 6 C -0.080 4.080 7 C -0.170 4.170 8 C -0.030 4.030 9 H 0.042 0.958 10 C -0.550 4.550 11 H 0.053 0.947 12 C -0.183 4.183 13 N -0.591 5.591 14 Si 0.768 3.232 15 H -0.183 1.183 16 H -0.221 1.221 17 H -0.176 1.176 18 C -0.062 4.062 19 C 0.306 3.694 20 N -0.396 5.396 21 O -0.478 6.478 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.104 0.896 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.120 0.880 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.251 0.749 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.244 4.001 21.796 22.397 hybrid contribution 1.421 0.066 -0.386 1.474 sum -1.823 4.067 21.411 21.870 Atomic orbital electron populations 1.21646 0.90539 1.02388 1.03992 1.21205 0.99597 1.00971 0.90365 0.86525 1.22024 0.97404 0.96872 0.89572 1.63603 1.55174 1.04452 1.01395 1.23115 0.96596 0.92715 0.95580 1.22962 1.00641 0.97884 0.95522 1.20309 0.95216 0.93520 0.93979 0.95783 1.21218 1.14919 1.27793 0.91048 0.94737 1.25841 0.99995 0.97932 0.94509 1.70049 1.42719 1.44736 1.01590 0.85873 0.79208 0.80086 0.78021 1.18317 1.22065 1.17622 1.22589 0.98640 0.95170 0.89782 1.20873 0.78484 0.83443 0.86571 1.43658 1.55120 1.33931 1.06913 1.90737 1.40411 1.28859 1.87783 0.90745 0.93456 0.89622 0.91706 0.95907 0.87953 0.93585 0.92759 0.91744 0.92525 0.92058 0.94077 0.74938 0.76136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.98 71.98 0.65 -1.54 16 2 C -0.10 -2.08 2.72 -11.54 -0.03 -2.11 16 3 H 0.12 2.00 7.34 -2.39 -0.02 1.99 16 4 C 0.07 2.10 3.30 86.30 0.28 2.38 16 5 N -0.52 -17.42 4.62 -885.55 -4.09 -21.51 16 6 C 0.05 1.48 5.72 86.77 0.50 1.98 16 7 C -0.13 -5.32 5.44 31.98 0.17 -5.14 16 8 C -0.01 -0.50 2.32 -10.36 -0.02 -0.52 16 9 H 0.02 1.17 7.03 -2.39 -0.02 1.15 16 10 C -0.51 -29.57 9.05 25.60 0.23 -29.34 16 11 H 0.03 2.21 7.77 -2.92 -0.02 2.19 16 12 C 0.01 0.83 5.46 84.65 0.46 1.30 16 13 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 14 Si 0.94 44.69 24.80 68.60 1.70 46.39 16 15 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 16 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 17 H -0.25 -11.26 6.46 99.48 0.64 -10.61 16 18 C 0.07 2.73 6.45 86.64 0.56 3.29 16 19 C 0.52 11.48 7.43 87.66 0.65 12.13 16 20 N -0.83 -9.67 8.77 -173.54 -1.52 -11.19 16 21 O -0.60 -19.48 16.76 -3.05 -0.05 -19.53 16 22 H 0.07 1.48 7.75 -2.39 -0.02 1.46 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.08 0.84 7.56 -2.39 -0.02 0.82 16 25 H 0.06 2.08 8.03 -2.39 -0.02 2.06 16 26 H 0.02 0.76 7.66 -2.38 -0.02 0.74 16 27 H 0.10 2.56 8.12 -2.39 -0.02 2.54 16 28 H 0.05 1.37 7.62 -2.38 -0.02 1.35 16 29 H 0.05 2.13 5.59 -2.39 -0.01 2.12 16 30 H 0.06 2.74 8.04 -2.38 -0.02 2.72 16 31 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.06 2.72 7.63 -2.39 -0.02 2.70 16 33 H 0.04 1.66 7.55 -2.39 -0.02 1.64 16 34 H 0.42 1.96 8.25 -92.70 -0.76 1.20 16 35 H 0.41 3.98 8.93 -92.71 -0.83 3.15 16 Total: -1.00 -73.20 277.78 -0.77 -73.97 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -0.56 Total: 9.11 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.45 Total: -17.58 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -5.31 Total: -92.36 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.05 Total: -19.53 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.70 Total: 46.39 kcal Total: -73.20 -0.77 -73.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582487.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.550 kcal (2) G-P(sol) polarization free energy of solvation -73.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds