Wall clock time and date at job start Mon Mar 30 2020 20:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47027 * 2 1 4 4 C 1.52998 * 109.46940 * 120.00093 * 2 1 3 5 5 N 1.46902 * 109.47345 * 296.12370 * 4 2 1 6 6 C 1.47844 * 111.00107 * 173.41689 * 5 4 2 7 7 C 1.54907 * 104.79765 * 146.36841 * 6 5 4 8 8 C 1.55150 * 101.64924 * 322.93113 * 7 6 5 9 9 H 1.08994 * 110.85703 * 277.19893 * 8 7 6 10 10 C 1.50697 * 110.70493 * 154.03342 * 8 7 6 11 11 H 1.07999 * 120.00557 * 246.40113 * 10 8 7 12 12 C 1.37884 * 119.99748 * 66.40119 * 10 8 7 13 13 N 1.31516 * 119.99991 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 119.99746 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46766 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47324 * 60.00100 * 14 12 10 17 17 H 1.48495 * 109.47267 * 299.99703 * 14 12 10 18 18 C 1.47443 * 111.00072 * 294.26553 * 5 4 2 19 19 C 1.50698 * 109.46830 * 240.00226 * 2 1 3 20 20 N 1.34774 * 120.00197 * 59.99894 * 19 2 1 21 21 O 1.21284 * 119.99666 * 239.99455 * 19 2 1 22 22 H 1.09004 * 109.47178 * 304.93531 * 1 2 3 23 23 H 1.08995 * 109.47630 * 64.94386 * 1 2 3 24 24 H 1.09001 * 109.47144 * 184.94280 * 1 2 3 25 25 H 1.09005 * 109.46825 * 176.12487 * 4 2 1 26 26 H 1.09000 * 109.47564 * 56.13289 * 4 2 1 27 27 H 1.09004 * 110.37404 * 265.20000 * 6 5 4 28 28 H 1.08999 * 110.37171 * 27.53872 * 6 5 4 29 29 H 1.08998 * 110.98980 * 204.84440 * 7 6 5 30 30 H 1.08994 * 110.98915 * 81.01967 * 7 6 5 31 31 H 0.96992 * 119.99974 * 0.02562 * 13 12 10 32 32 H 1.09000 * 109.88790 * 117.33675 * 18 5 4 33 33 H 1.08995 * 109.88702 * 356.14311 * 18 5 4 34 34 H 0.96991 * 119.99835 * 0.02562 * 20 19 2 35 35 H 0.97002 * 119.99410 * 179.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6282 0.0231 2.4469 6 6 1.9664 -0.7237 3.6772 7 6 2.3136 0.3681 4.7199 8 6 3.0465 1.4172 3.8427 9 1 4.0937 1.1467 3.7079 10 6 2.9269 2.7930 4.4459 11 1 2.3635 3.5596 3.9349 12 6 3.5369 3.0730 5.6504 13 7 4.2226 2.1393 6.2730 14 14 3.3880 4.7782 6.3985 15 1 4.1286 4.8207 7.6849 16 1 1.9563 5.0894 6.6405 17 1 3.9613 5.7803 5.4645 18 6 2.2864 1.3414 2.5019 19 6 2.0323 -0.7104 -1.2305 20 7 1.7067 -0.2499 -2.4546 21 8 2.7296 -1.6964 -1.1192 22 1 -0.3634 0.5885 0.8425 23 1 -0.3634 0.4352 -0.9309 24 1 -0.3633 -1.0238 0.0885 25 1 3.1278 -0.7818 1.2152 26 1 1.6212 -1.7270 1.2846 27 1 1.1109 -1.3102 4.0124 28 1 2.8266 -1.3704 3.5042 29 1 2.9747 -0.0256 5.4920 30 1 1.4098 0.7896 5.1595 31 1 4.2995 1.2539 5.8848 32 1 1.5374 2.1320 2.4551 33 1 2.9865 1.4411 1.6725 34 1 1.1494 0.5389 -2.5435 35 1 2.0303 -0.7070 -3.2465 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397582489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:49 Heat of formation + Delta-G solvation = -54.173463 kcal Electronic energy + Delta-G solvation = -16020.706942 eV Core-core repulsion = 13438.674166 eV Total energy + Delta-G solvation = -2582.032777 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.84480 -38.12863 -34.53586 -33.72536 -32.46314 -29.41653 -28.27635 -25.70117 -24.23184 -22.97564 -20.37785 -20.10722 -19.10595 -17.39642 -16.95852 -16.76991 -15.58894 -14.88674 -14.57610 -13.84655 -13.73481 -13.60100 -12.86662 -12.65444 -12.44308 -12.15239 -11.79751 -11.47296 -11.18133 -10.80299 -10.73572 -10.61764 -10.39684 -10.09716 -9.84732 -9.79058 -9.75531 -9.56863 -8.48824 -8.33918 -7.69228 -6.32783 -4.04587 2.61816 3.42863 3.44453 3.45914 3.64654 4.53495 4.59098 4.80219 4.98000 5.17176 5.38107 5.43419 5.69589 5.72209 5.85131 5.99078 6.01418 6.09327 6.18517 6.25307 6.32052 6.44589 6.66231 6.71126 6.92996 6.99253 7.21036 7.25970 7.42589 7.68454 7.76713 8.20043 8.23967 8.43930 8.88995 9.67269 11.05353 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.043972 B = 0.005976 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.611804 B = 4684.125460 C = 4905.993850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.109 4.109 3 H 0.100 0.900 4 C 0.071 3.929 5 N -0.531 5.531 6 C 0.041 3.959 7 C -0.119 4.119 8 C 0.017 3.983 9 H 0.020 0.980 10 C -0.590 4.590 11 H 0.050 0.950 12 C 0.019 3.981 13 N -0.913 5.913 14 Si 1.067 2.933 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.053 3.947 19 C 0.523 3.477 20 N -0.858 5.858 21 O -0.546 6.546 22 H 0.082 0.918 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.271 0.729 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.401 0.599 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -2.934 -13.349 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.131 4.131 3 H 0.118 0.882 4 C -0.058 4.058 5 N -0.255 5.255 6 C -0.087 4.087 7 C -0.157 4.157 8 C -0.002 4.002 9 H 0.038 0.962 10 C -0.628 4.628 11 H 0.068 0.932 12 C -0.185 4.185 13 N -0.549 5.549 14 Si 0.896 3.104 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.216 1.216 18 C -0.074 4.074 19 C 0.308 3.692 20 N -0.421 5.421 21 O -0.422 6.422 22 H 0.101 0.899 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.230 0.770 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.926 -2.574 -11.802 13.924 hybrid contribution 0.325 -0.839 -1.813 2.024 sum -6.601 -3.413 -13.614 15.510 Atomic orbital electron populations 1.21640 0.92132 1.02740 1.02265 1.21318 0.98465 1.01026 0.92296 0.88189 1.21950 0.98083 0.96867 0.88882 1.63611 1.56994 1.03718 1.01161 1.23044 0.98245 0.96642 0.90746 1.22864 1.00642 0.95344 0.96881 1.19979 0.93803 0.95847 0.90583 0.96173 1.21884 1.36499 0.95974 1.08452 0.93171 1.25794 0.93305 1.04902 0.94503 1.70797 1.38683 1.04749 1.40658 0.83562 0.76242 0.74358 0.76240 1.20860 1.21436 1.21552 1.22913 0.96242 0.89815 0.98442 1.20831 0.78970 0.84047 0.85363 1.43888 1.56281 1.33925 1.08051 1.90731 1.37854 1.26589 1.87043 0.89907 0.93273 0.92540 0.94410 0.90921 0.91653 0.94760 0.92182 0.91683 0.91771 0.91078 0.94868 0.77036 0.77185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 8.95 37.16 0.33 -1.13 16 2 C -0.11 -1.47 2.63 -91.77 -0.24 -1.71 16 3 H 0.10 1.33 6.78 -51.93 -0.35 0.98 16 4 C 0.07 1.19 3.26 -3.82 -0.01 1.18 16 5 N -0.53 -9.88 4.68 -231.25 -1.08 -10.96 16 6 C 0.04 0.79 6.71 -2.30 -0.02 0.78 16 7 C -0.12 -2.74 5.86 -24.59 -0.14 -2.88 16 8 C 0.02 0.43 2.43 -89.94 -0.22 0.21 16 9 H 0.02 0.55 7.92 -51.93 -0.41 0.14 16 10 C -0.59 -16.32 8.47 -34.44 -0.29 -16.61 16 11 H 0.05 1.37 7.53 -52.49 -0.40 0.98 16 12 C 0.02 0.54 5.36 -17.82 -0.10 0.45 16 13 N -0.91 -27.30 13.49 55.43 0.75 -26.55 16 14 Si 1.07 24.95 29.90 -169.99 -5.08 19.86 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.05 1.11 5.70 -2.83 -0.02 1.09 16 19 C 0.52 6.98 7.43 -10.99 -0.08 6.90 16 20 N -0.86 -7.41 8.74 31.22 0.27 -7.13 16 21 O -0.55 -9.61 16.78 5.55 0.09 -9.51 16 22 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 23 H 0.05 0.41 7.43 -51.93 -0.39 0.03 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.70 7.93 -51.93 -0.41 0.29 16 26 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.03 0.66 7.81 -51.93 -0.41 0.25 16 29 H 0.06 1.44 6.77 -51.93 -0.35 1.09 16 30 H 0.06 1.57 8.04 -51.93 -0.42 1.15 16 31 H 0.27 8.03 5.59 -40.82 -0.23 7.80 16 32 H 0.07 1.51 7.63 -51.93 -0.40 1.12 16 33 H 0.03 0.66 6.73 -51.93 -0.35 0.31 16 34 H 0.40 2.34 8.19 -40.82 -0.33 2.00 16 35 H 0.40 2.93 8.93 -40.82 -0.36 2.56 16 LS Contribution 281.23 15.07 4.24 4.24 Total: -1.00 -32.18 281.23 -6.87 -39.06 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.27 Total: 2.73 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.78 Total: -11.73 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.06 Total: -44.64 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.18 -6.87 -39.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397582489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.116 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds