Wall clock time and date at job start Mon Mar 30 2020 20:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47139 * 2 1 4 4 C 1.34770 * 119.99935 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00213 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00089 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.47350 * 180.02562 * 6 4 3 8 8 C 1.48815 * 111.18476 * 52.66279 * 7 6 4 9 9 C 1.54938 * 103.34940 * 159.50474 * 8 7 6 10 10 C 1.54593 * 102.92402 * 322.69169 * 9 8 7 11 11 H 1.08996 * 110.39387 * 262.99979 * 10 9 8 12 12 C 1.50693 * 110.31084 * 140.87049 * 10 9 8 13 13 H 1.07996 * 120.00729 * 249.56596 * 12 10 9 14 14 C 1.37889 * 119.99983 * 69.56337 * 12 10 9 15 15 N 1.31513 * 119.99590 * 8.86261 * 14 12 10 16 16 Si 1.86797 * 120.00082 * 188.86295 * 14 12 10 17 17 H 1.48492 * 109.47063 * 94.97529 * 16 14 12 18 18 H 1.48505 * 109.46751 * 214.97288 * 16 14 12 19 19 H 1.48495 * 109.47139 * 334.97079 * 16 14 12 20 20 C 1.47900 * 111.00446 * 169.99714 * 7 6 4 21 21 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47271 * 299.99734 * 1 2 3 23 23 H 1.09001 * 109.47280 * 59.99473 * 1 2 3 24 24 H 1.09005 * 109.46990 * 240.00398 * 2 1 3 25 25 H 1.09001 * 109.47280 * 120.00527 * 2 1 3 26 26 H 0.97002 * 119.99872 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.47558 * 60.00308 * 6 4 3 28 28 H 1.09004 * 109.47509 * 300.00090 * 6 4 3 29 29 H 1.09003 * 110.51889 * 41.07619 * 8 7 6 30 30 H 1.08997 * 110.83898 * 278.09232 * 8 7 6 31 31 H 1.09000 * 110.72410 * 204.32996 * 9 8 7 32 32 H 1.09001 * 110.72290 * 81.05075 * 9 8 7 33 33 H 0.96995 * 119.99705 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.91731 * 94.80346 * 20 7 6 35 35 H 1.09007 * 109.91722 * 333.71073 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6274 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8457 3.0482 0.0011 7 7 5.3147 3.0482 0.0010 8 6 5.8524 2.2072 -1.1027 9 6 7.2983 2.7341 -1.2822 10 6 7.1431 4.2549 -1.0521 11 1 7.0559 4.7763 -2.0053 12 6 8.3161 4.7881 -0.2707 13 1 8.1801 5.1221 0.7473 14 6 9.5634 4.8496 -0.8554 15 7 9.6992 4.6101 -2.1414 16 14 11.0600 5.2732 0.1790 17 1 11.7219 4.0219 0.6276 18 1 12.0122 6.0733 -0.6325 19 1 10.6358 6.0611 1.3640 20 6 5.8448 4.4081 -0.2383 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.3880 2.1185 0.0004 27 1 3.4822 3.5619 0.8911 28 1 3.4827 3.5624 -0.8889 29 1 5.2728 2.3561 -2.0138 30 1 5.8588 1.1545 -0.8201 31 1 7.6604 2.5314 -2.2901 32 1 7.9633 2.2972 -0.5372 33 1 10.5765 4.6537 -2.5528 34 1 6.0581 4.8961 0.7127 35 1 5.1200 4.9952 -0.8024 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397631883.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:53 Heat of formation + Delta-G solvation = -58.431791 kcal Electronic energy + Delta-G solvation = -15755.336760 eV Core-core repulsion = 13173.119328 eV Total energy + Delta-G solvation = -2582.217432 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02226 -39.10907 -36.25199 -35.04707 -32.84261 -31.36453 -29.91306 -27.83301 -25.88238 -23.65121 -22.15248 -21.41344 -21.27111 -18.59778 -17.90910 -17.30925 -16.71128 -16.54977 -15.99782 -15.91556 -15.26980 -14.69991 -14.28644 -14.07974 -13.81501 -13.32613 -13.19240 -12.88236 -12.77233 -12.66428 -12.50750 -12.40676 -12.27508 -12.06438 -11.62987 -11.20846 -10.87155 -10.64449 -10.41892 -10.05978 -9.23788 -8.13619 -6.19443 1.41307 1.43982 1.53599 1.65351 2.16111 2.44990 3.17543 3.23421 3.84302 4.12239 4.17950 4.23017 4.32297 4.33882 4.48263 4.53750 4.57596 4.61042 4.91143 4.99501 5.04469 5.07847 5.21131 5.27713 5.37786 5.55002 5.57381 5.66125 5.83765 6.11495 6.17388 6.39127 6.63092 6.89207 7.32845 7.46058 8.97204 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.074480 B = 0.005067 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.849133 B = 5524.192854 C = 5590.747560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 N -0.719 5.719 4 C 0.509 3.491 5 O -0.568 6.568 6 C 0.026 3.974 7 N -0.517 5.517 8 C 0.050 3.950 9 C -0.096 4.096 10 C 0.029 3.971 11 H 0.009 0.991 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.011 3.989 15 N -0.923 5.923 16 Si 0.954 3.046 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.056 3.944 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.417 0.583 27 H 0.128 0.872 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.357 -4.609 3.522 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.373 5.373 4 C 0.296 3.704 5 O -0.446 6.446 6 C -0.105 4.105 7 N -0.242 5.242 8 C -0.077 4.077 9 C -0.135 4.135 10 C 0.010 3.990 11 H 0.027 0.973 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.779 3.221 17 H -0.206 1.206 18 H -0.209 1.209 19 H -0.188 1.188 20 C -0.071 4.071 21 H 0.102 0.898 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.254 0.746 27 H 0.146 0.854 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.549 -5.474 3.902 19.730 hybrid contribution 0.684 0.734 -0.626 1.183 sum -17.865 -4.740 3.275 18.771 Atomic orbital electron populations 1.21940 0.91511 1.04177 1.03412 1.21360 0.96395 0.82376 1.01161 1.45931 1.06135 1.09951 1.75321 1.20863 0.82804 0.91523 0.75240 1.90655 1.56128 1.47673 1.50186 1.22364 0.89620 0.93604 1.04913 1.64658 1.06073 1.09197 1.44319 1.23283 0.94597 0.98738 0.91119 1.22336 0.94644 0.98193 0.98285 1.19500 0.92595 0.92425 0.94446 0.97278 1.21530 0.93969 1.41783 0.98980 0.92532 1.25777 1.01891 0.95321 0.95750 1.70096 1.23987 1.51022 1.11167 0.85606 0.79332 0.78083 0.79045 1.20614 1.20855 1.18821 1.22918 0.95868 0.88619 0.99686 0.89829 0.90912 0.91088 0.93027 0.92830 0.74613 0.85420 0.90148 0.95189 0.89723 0.94571 0.94572 0.93079 0.91168 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.03 71.98 0.72 -0.69 16 2 C 0.11 1.94 6.39 86.38 0.55 2.50 16 3 N -0.72 -13.64 5.56 -463.07 -2.57 -16.21 16 4 C 0.51 14.67 7.54 87.66 0.66 15.33 16 5 O -0.57 -21.97 13.54 -3.04 -0.04 -22.01 16 6 C 0.03 0.72 5.52 85.56 0.47 1.19 16 7 N -0.52 -20.44 5.26 -886.77 -4.67 -25.11 16 8 C 0.05 2.16 5.31 86.59 0.46 2.62 16 9 C -0.10 -4.90 6.32 31.80 0.20 -4.70 16 10 C 0.03 1.54 2.76 -10.66 -0.03 1.51 16 11 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 12 C -0.52 -29.92 8.30 25.60 0.21 -29.70 16 13 H 0.06 3.16 7.38 -2.91 -0.02 3.14 16 14 C 0.01 0.64 5.32 84.66 0.45 1.09 16 15 N -0.92 -55.67 13.11 21.45 0.28 -55.39 16 16 Si 0.95 45.13 29.55 68.60 2.03 47.16 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 20 C 0.06 2.37 6.34 86.45 0.55 2.92 16 21 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.42 4.79 8.47 -92.71 -0.79 4.00 16 27 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.08 1.92 7.81 -2.38 -0.02 1.90 16 29 H 0.03 1.22 8.02 -2.39 -0.02 1.20 16 30 H 0.08 3.84 6.01 -2.39 -0.01 3.83 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.98 7.86 -2.39 -0.02 1.96 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.07 2.98 7.40 -2.39 -0.02 2.97 16 35 H 0.05 1.66 7.57 -2.38 -0.02 1.65 16 Total: -1.00 -71.36 286.06 -0.44 -71.80 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.28 Total: 7.70 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 4.25 Total: -7.94 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -6.96 Total: -96.71 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.04 Total: -22.01 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -71.36 -0.44 -71.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631883.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.370 kcal (2) G-P(sol) polarization free energy of solvation -71.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds