Wall clock time and date at job start Mon Mar 30 2020 20:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47042 * 2 1 4 4 C 1.46498 * 120.00031 * 270.00134 * 3 2 1 5 5 C 1.50703 * 109.47314 * 269.99928 * 4 3 2 6 6 H 1.08007 * 119.99484 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00073 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99981 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47183 * 60.00014 * 9 7 5 11 11 H 1.48502 * 109.47100 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47439 * 300.00102 * 9 7 5 13 13 C 1.34779 * 119.99842 * 90.00450 * 3 2 1 14 14 O 1.21285 * 119.99920 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00040 * 359.97438 * 13 3 2 16 16 C 1.53000 * 109.47216 * 186.18016 * 15 13 3 17 17 N 1.46897 * 115.56042 * 279.85256 * 16 15 13 18 18 C 1.52995 * 117.49915 * 65.54295 * 16 15 13 19 19 C 1.52999 * 60.00285 * 107.48886 * 18 16 15 20 20 H 1.09007 * 109.47202 * 299.99723 * 1 2 3 21 21 H 1.08997 * 109.47257 * 59.99741 * 1 2 3 22 22 H 1.09000 * 109.47425 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46858 * 240.00507 * 2 1 3 24 24 H 1.08997 * 109.47257 * 120.00259 * 2 1 3 25 25 H 1.08996 * 109.47310 * 30.00186 * 4 3 2 26 26 H 1.08996 * 109.47296 * 150.00322 * 4 3 2 27 27 H 0.96994 * 119.99972 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47492 * 66.17751 * 15 13 3 29 29 H 1.09006 * 109.47359 * 306.17817 * 15 13 3 30 30 H 1.00899 * 111.00549 * 330.37906 * 17 16 15 31 31 H 1.00900 * 111.00107 * 94.33235 * 17 16 15 32 32 H 1.09000 * 117.49997 * 359.97438 * 18 16 15 33 33 H 1.09000 * 117.50162 * 214.98348 * 18 16 15 34 34 H 1.09005 * 117.49301 * 107.48637 * 19 18 16 35 35 H 1.08993 * 117.49729 * 252.48975 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3898 -2.8780 8 7 3.3489 3.1258 -3.6181 9 14 5.9130 2.0957 -3.4176 10 1 6.1401 0.6389 -3.5949 11 1 6.1605 2.7959 -4.7036 12 1 6.8409 2.6190 -2.3831 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1673 15 6 1.9914 1.3063 2.4723 16 6 2.1742 2.2885 3.6310 17 7 3.5639 2.5419 4.0340 18 6 1.1856 3.4517 3.7337 19 6 1.1085 2.2921 4.7289 20 1 -0.3634 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.5816 1.6878 -2.0283 26 1 2.0955 3.1411 -1.1384 27 1 3.6747 3.5157 -4.4443 28 1 2.6970 0.4824 2.5796 29 1 0.9735 0.9166 2.4835 30 1 4.1447 1.7362 3.8560 31 1 3.9306 3.3609 3.5726 32 1 0.4053 3.5175 2.9756 33 1 1.5664 4.4050 4.1002 34 1 1.4386 2.4826 5.7501 35 1 0.2770 1.5950 4.6258 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398164850.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:58 Heat of formation + Delta-G solvation = -42.075076 kcal Electronic energy + Delta-G solvation = -16149.375533 eV Core-core repulsion = 13567.867382 eV Total energy + Delta-G solvation = -2581.508151 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.95550 -38.56734 -36.82735 -34.93811 -31.98474 -31.69630 -30.68378 -28.48219 -24.96046 -24.12695 -23.27999 -20.97029 -19.62629 -18.63483 -17.81180 -17.33476 -16.86186 -16.52056 -16.03426 -15.56018 -14.90393 -14.70636 -14.46555 -14.38461 -13.75125 -13.42256 -13.31803 -13.12421 -12.90280 -12.68174 -12.50398 -12.31609 -12.17266 -11.90971 -11.74961 -11.57062 -10.95998 -10.66677 -10.53257 -9.58859 -9.42041 -8.24352 -6.39793 1.34316 1.38420 1.45851 1.87171 2.25805 2.40800 2.95969 3.05011 3.48725 3.70434 3.80765 3.98771 4.12722 4.30064 4.43735 4.56826 4.63110 4.74138 4.79571 4.84500 4.96875 4.98615 5.04410 5.07845 5.21076 5.33027 5.37960 5.56071 5.85720 6.04758 6.20478 6.47419 6.68356 6.82876 7.26836 7.51876 8.82413 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.029703 B = 0.007677 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.443946 B = 3646.217834 C = 4121.391241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.494 3.506 14 O -0.588 6.588 15 C -0.114 4.114 16 C 0.043 3.957 17 N -0.807 5.807 18 C -0.176 4.176 19 C -0.132 4.132 20 H 0.061 0.939 21 H 0.036 0.964 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.017 0.983 26 H -0.006 1.006 27 H 0.267 0.733 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.346 0.654 31 H 0.340 0.660 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 -8.664 12.753 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.284 3.716 14 O -0.469 6.469 15 C -0.156 4.156 16 C -0.051 4.051 17 N -0.335 5.335 18 C -0.214 4.214 19 C -0.170 4.170 20 H 0.080 0.920 21 H 0.055 0.945 22 H 0.114 0.886 23 H 0.087 0.913 24 H 0.119 0.881 25 H 0.035 0.965 26 H 0.012 0.988 27 H 0.076 0.924 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.251 -7.895 13.303 16.337 hybrid contribution 1.119 0.308 -1.968 2.285 sum -4.132 -7.587 11.335 14.252 Atomic orbital electron populations 1.22160 0.94639 1.03528 1.01615 1.21735 0.95294 0.81477 1.03824 1.48308 1.64078 1.15037 1.06276 1.18642 0.95134 0.91398 0.80624 1.21685 0.97907 1.32011 1.06549 0.92877 1.25876 1.02432 0.94464 0.96441 1.70046 1.37876 1.34199 1.14794 0.85473 0.78949 0.79046 0.77378 1.18406 1.20347 1.20314 1.21327 0.77236 0.86669 0.86406 1.90631 1.47761 1.20416 1.88057 1.21832 1.05965 0.98595 0.89172 1.21046 0.88046 1.00031 0.96016 1.58760 1.01524 1.09526 1.63692 1.22914 1.01577 0.94145 1.02776 1.23308 0.98790 0.99708 0.95214 0.92012 0.94521 0.88555 0.91258 0.88074 0.96455 0.98779 0.92404 0.86877 0.86200 0.84102 0.84722 0.90160 0.89635 0.87725 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 10.18 71.98 0.73 -3.16 16 2 C 0.10 2.95 5.85 86.38 0.50 3.45 16 3 N -0.61 -25.31 2.46 -826.16 -2.03 -27.34 16 4 C 0.26 14.36 5.16 85.63 0.44 14.80 16 5 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.39 5.46 84.65 0.46 0.86 16 8 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 9 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 10 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.49 19.91 7.53 87.66 0.66 20.57 16 14 O -0.59 -29.47 15.15 -3.05 -0.05 -29.52 16 15 C -0.11 -3.06 4.20 29.85 0.13 -2.94 16 16 C 0.04 1.17 2.04 3.53 0.01 1.17 16 17 N -0.81 -22.40 9.77 -151.57 -1.48 -23.88 16 18 C -0.18 -4.98 9.43 30.59 0.29 -4.69 16 19 C -0.13 -2.80 10.10 30.60 0.31 -2.49 16 20 H 0.06 1.35 7.12 -2.38 -0.02 1.34 16 21 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 23 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 24 H 0.10 2.26 6.61 -2.39 -0.02 2.25 16 25 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 26 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 27 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.11 2.55 7.57 -2.38 -0.02 2.53 16 29 H 0.12 2.52 6.66 -2.38 -0.02 2.51 16 30 H 0.35 8.64 8.76 -89.70 -0.79 7.86 16 31 H 0.34 10.84 9.08 -89.69 -0.81 10.03 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.12 1.88 8.08 -2.39 -0.02 1.86 16 Total: -1.00 -72.18 295.14 2.02 -70.17 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.51 Total: 23.71 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 3.77 Total: -3.67 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -3.23 Total: -107.80 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.05 Total: -29.52 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.18 2.02 -70.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398164850.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.093 kcal (2) G-P(sol) polarization free energy of solvation -72.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds