Wall clock time and date at job start Mon Mar 30 2020 20:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46844 * 2 1 4 4 C 1.50702 * 109.47078 * 240.00256 * 2 1 3 5 5 H 1.07998 * 119.99733 * 239.99887 * 4 2 1 6 6 C 1.37872 * 119.99821 * 60.00054 * 4 2 1 7 7 N 1.31510 * 120.00633 * 359.97438 * 6 4 2 8 8 Si 1.86812 * 119.99699 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46965 * 89.99940 * 8 6 4 10 10 H 1.48504 * 109.46813 * 209.99635 * 8 6 4 11 11 H 1.48493 * 109.47074 * 329.99854 * 8 6 4 12 12 N 1.46499 * 109.47065 * 120.00269 * 2 1 3 13 13 C 1.34774 * 119.99755 * 274.99974 * 12 2 1 14 14 O 1.21273 * 120.00176 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99685 * 180.02562 * 13 12 2 16 16 H 1.08996 * 109.47343 * 319.99900 * 15 13 12 17 17 N 1.46905 * 109.47075 * 200.00059 * 15 13 12 18 18 C 1.53001 * 109.47072 * 80.00235 * 15 13 12 19 19 C 1.53775 * 113.61374 * 279.13452 * 18 15 13 20 20 C 1.53957 * 87.02383 * 220.05094 * 19 18 15 21 21 C 1.53778 * 87.10719 * 25.35994 * 20 19 18 22 22 H 1.08988 * 109.47328 * 299.99557 * 1 2 3 23 23 H 1.09001 * 109.47025 * 60.00135 * 1 2 3 24 24 H 1.09010 * 109.46958 * 179.97438 * 1 2 3 25 25 H 0.97002 * 120.00507 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99735 * 95.00121 * 12 2 1 27 27 H 1.00901 * 110.99869 * 176.04968 * 17 15 13 28 28 H 1.00896 * 110.99543 * 300.00090 * 17 15 13 29 29 H 1.09003 * 112.84861 * 50.33333 * 18 15 13 30 30 H 1.09004 * 113.61714 * 334.56734 * 19 18 15 31 31 H 1.09003 * 113.61597 * 105.46734 * 19 18 15 32 32 H 1.09005 * 113.53493 * 270.81564 * 20 19 18 33 33 H 1.08992 * 113.74480 * 139.94455 * 20 19 18 34 34 H 1.08999 * 113.61682 * 220.09286 * 21 20 19 35 35 H 1.09005 * 113.61074 * 89.19177 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.3449 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1121 11 1 3.6309 -1.7564 -3.7120 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8582 1.1582 2.4117 15 6 2.6499 -0.7287 3.5874 16 1 2.2157 -1.7274 3.6333 17 7 2.2612 0.0298 4.7840 18 6 4.1748 -0.8378 3.5258 19 6 4.6744 -1.9959 2.6461 20 6 5.7501 -2.2414 3.7198 21 6 4.7879 -1.5834 4.7229 22 1 -0.3633 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 0.7082 1.1610 -3.4844 26 1 2.2490 -1.6318 1.1525 27 1 2.5307 -0.4585 5.6249 28 1 2.6517 0.9599 4.7651 29 1 4.6589 0.1147 3.3102 30 1 3.9584 -2.8123 2.5508 31 1 5.0792 -1.6726 1.6870 32 1 6.6659 -1.6732 3.5563 33 1 5.9366 -3.2962 3.9212 34 1 5.2841 -0.9275 5.4381 35 1 4.1029 -2.2868 5.1965 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399136910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:49:07 Heat of formation + Delta-G solvation = -31.313104 kcal Electronic energy + Delta-G solvation = -16097.725102 eV Core-core repulsion = 13516.683625 eV Total energy + Delta-G solvation = -2581.041477 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.76883 -37.96208 -34.84678 -33.41764 -32.30880 -29.14305 -26.84398 -25.53235 -25.22024 -23.48139 -20.77595 -19.57789 -19.23194 -17.44553 -16.08770 -15.58470 -15.34382 -15.15173 -14.40306 -14.33119 -13.53712 -13.22779 -12.82596 -12.50983 -12.33547 -12.11240 -11.71490 -11.46750 -11.08796 -10.99213 -10.88938 -10.67070 -10.50012 -10.37324 -10.28672 -10.20460 -9.02349 -8.97800 -8.53260 -8.37296 -7.82366 -6.09673 -4.18945 3.25078 3.31806 3.33820 3.45776 4.06469 4.38073 4.46444 4.58966 4.71262 4.79124 5.12467 5.22308 5.28652 5.47677 5.59469 5.65524 5.69218 5.79495 5.83794 6.06531 6.17895 6.41430 6.87777 7.03899 7.17534 7.22612 7.52807 7.58128 7.63639 7.74319 7.96700 8.19320 8.73923 8.82918 9.21999 9.49115 10.96264 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031401 B = 0.007430 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.476171 B = 3767.618700 C = 4476.090874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.510 3.490 14 O -0.549 6.549 15 C 0.083 3.917 16 H 0.094 0.906 17 N -0.825 5.825 18 C -0.139 4.139 19 C -0.135 4.135 20 C -0.140 4.140 21 C -0.136 4.136 22 H 0.015 0.985 23 H 0.089 0.911 24 H 0.025 0.975 25 H 0.264 0.736 26 H 0.386 0.614 27 H 0.339 0.661 28 H 0.350 0.650 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 -6.845 11.512 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.355 5.355 13 C 0.293 3.707 14 O -0.427 6.427 15 C -0.032 4.032 16 H 0.112 0.888 17 N -0.355 5.355 18 C -0.160 4.160 19 C -0.173 4.173 20 C -0.177 4.177 21 C -0.174 4.174 22 H 0.034 0.966 23 H 0.108 0.892 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.219 0.781 27 H 0.151 0.849 28 H 0.164 0.836 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.035 -5.935 11.115 13.971 hybrid contribution 1.423 -0.895 -0.735 1.835 sum 7.458 -6.830 10.380 14.492 Atomic orbital electron populations 1.22073 0.98539 0.99064 1.00885 1.18708 0.90990 0.93909 0.80067 0.93541 1.21224 1.32344 1.13130 0.90368 0.92131 1.24889 0.94870 0.94944 0.99024 1.69906 1.35925 1.22465 1.23812 0.86470 0.79149 0.79289 0.82310 1.20551 1.21088 1.19889 1.46485 1.65125 1.13425 1.10488 1.20213 0.78491 0.87519 0.84430 1.90627 1.50978 1.16246 1.84881 1.21444 0.92662 0.98076 0.91063 0.88811 1.58553 1.67539 1.06789 1.02631 1.23303 0.95668 0.99236 0.97818 1.22955 0.98334 0.97859 0.98152 1.22795 0.97374 1.00675 0.96863 1.22930 0.98823 0.99415 0.96209 0.96575 0.89247 0.95544 0.92608 0.78147 0.84870 0.83637 0.88939 0.89789 0.90666 0.90356 0.91496 0.91689 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 2 C 0.27 6.89 2.56 -69.08 -0.18 6.71 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.71 -14.97 5.07 -54.93 -0.28 -15.25 16 13 C 0.51 10.43 7.02 -10.98 -0.08 10.36 16 14 O -0.55 -13.60 15.91 5.56 0.09 -13.51 16 15 C 0.08 1.22 2.94 -68.86 -0.20 1.02 16 16 H 0.09 1.26 7.98 -51.93 -0.41 0.85 16 17 N -0.83 -11.47 8.95 -5.65 -0.05 -11.52 16 18 C -0.14 -1.74 3.27 -89.81 -0.29 -2.04 16 19 C -0.13 -1.59 7.49 -25.83 -0.19 -1.78 16 20 C -0.14 -1.35 8.09 -25.83 -0.21 -1.56 16 21 C -0.14 -1.30 6.95 -25.92 -0.18 -1.48 16 22 H 0.02 0.39 8.14 -51.94 -0.42 -0.03 16 23 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 24 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.39 7.12 8.41 -40.82 -0.34 6.77 16 27 H 0.34 3.59 8.42 -39.29 -0.33 3.26 16 28 H 0.35 5.06 8.58 -39.29 -0.34 4.72 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.08 0.92 7.99 -51.93 -0.41 0.51 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 289.88 15.07 4.37 4.37 Total: -1.00 -30.89 289.88 -7.12 -38.01 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.47 Total: 11.80 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.38 Total: -5.04 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.30 Total: -51.36 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.89 -7.12 -38.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399136910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.697 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds