Wall clock time and date at job start Mon Mar 30 2020 20:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 N 1.46900 * 109.47107 * 119.99784 * 2 1 3 5 5 C 1.46901 * 111.00411 * 154.99850 * 4 2 1 6 6 C 1.52993 * 109.47662 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.58590 * 299.12070 * 6 5 4 8 8 C 1.53192 * 109.58864 * 178.69266 * 6 5 4 9 9 C 1.53043 * 109.31136 * 185.57323 * 8 6 5 10 10 C 1.53046 * 109.53424 * 61.36571 * 9 8 6 11 11 C 1.53190 * 109.31595 * 298.63126 * 10 9 8 12 12 N 1.46925 * 109.58794 * 59.39731 * 6 5 4 13 13 C 1.36938 * 120.62768 * 353.38184 * 12 6 5 14 14 H 1.07996 * 120.00293 * 31.74036 * 13 12 6 15 15 C 1.38818 * 119.99665 * 211.73873 * 13 12 6 16 16 N 1.31618 * 119.99818 * 12.34653 * 15 13 12 17 17 Si 1.86796 * 119.99860 * 192.34766 * 15 13 12 18 18 H 1.48498 * 109.47407 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47231 * 120.00406 * 17 15 13 20 20 H 1.48504 * 109.46832 * 239.99989 * 17 15 13 21 21 H 1.08995 * 109.47028 * 59.99839 * 1 2 3 22 22 H 1.08995 * 109.47214 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47052 * 300.00123 * 1 2 3 24 24 H 1.08995 * 109.47146 * 239.99601 * 2 1 3 25 25 H 1.09005 * 109.46654 * 300.00135 * 3 2 1 26 26 H 1.09005 * 109.46768 * 59.99471 * 3 2 1 27 27 H 1.08992 * 109.47482 * 179.97438 * 3 2 1 28 28 H 1.00895 * 111.00411 * 278.95521 * 4 2 1 29 29 H 1.08998 * 109.46805 * 300.00347 * 5 4 2 30 30 H 1.09003 * 109.46967 * 59.99894 * 5 4 2 31 31 H 1.09001 * 109.49739 * 305.52542 * 8 6 5 32 32 H 1.09002 * 109.49666 * 65.62335 * 8 6 5 33 33 H 1.08994 * 109.46294 * 301.34452 * 9 8 6 34 34 H 1.08999 * 109.45613 * 181.38125 * 9 8 6 35 35 H 1.09000 * 109.49275 * 178.67915 * 10 9 8 36 36 H 1.09001 * 109.49479 * 58.58606 * 10 9 8 37 37 H 1.08999 * 109.58551 * 294.84954 * 11 10 9 38 38 H 1.08992 * 109.58809 * 174.42469 * 11 10 9 39 39 H 0.97000 * 120.00045 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3670 -1.2355 0.9808 6 6 3.8417 -1.9482 2.2487 7 1 3.8812 -1.2376 3.0743 8 6 5.2333 -2.5436 2.0127 9 6 5.6431 -3.3715 3.2329 10 6 4.6522 -4.5215 3.4273 11 6 3.2540 -3.9485 3.6793 12 7 2.9115 -3.0363 2.5796 13 6 1.7474 -3.1970 1.8767 14 1 1.7056 -2.9264 0.8320 15 6 0.6209 -3.7078 2.5070 16 7 0.5902 -3.8097 3.8188 17 14 -0.8512 -4.2504 1.4932 18 1 -0.5667 -4.0336 0.0519 19 1 -1.1145 -5.6918 1.7350 20 1 -2.0429 -3.4567 1.8869 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 2.0020 -0.0816 2.0023 29 1 3.3430 -1.9444 0.1532 30 1 4.0523 -0.4220 0.7426 31 1 5.2105 -3.1830 1.1302 32 1 5.9524 -1.7387 1.8609 33 1 5.6417 -2.7372 4.1192 34 1 6.6432 -3.7762 3.0778 35 1 4.9579 -5.1244 4.2824 36 1 4.6350 -5.1422 2.5315 37 1 3.2476 -3.4024 4.6226 38 1 2.5282 -4.7606 3.7200 39 1 -0.1967 -4.1670 4.2593 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082646292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:30 Heat of formation + Delta-G solvation = -2.611353 kcal Electronic energy + Delta-G solvation = -17088.831206 eV Core-core repulsion = 14644.867425 eV Total energy + Delta-G solvation = -2443.963781 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -39.66560 -37.66251 -34.71458 -33.63063 -31.55964 -30.43090 -27.92897 -27.13669 -25.40904 -23.67010 -21.98740 -21.57697 -20.56044 -18.13894 -17.23738 -16.22951 -15.94089 -15.66338 -15.45220 -14.84203 -14.58320 -14.39981 -14.16312 -13.93807 -13.54970 -13.08213 -13.00559 -12.82882 -12.63318 -12.59707 -12.27602 -12.07941 -11.97636 -11.85504 -11.69595 -11.62397 -11.48121 -11.04238 -10.79205 -10.31869 -8.85647 -8.26296 -7.57787 -5.00452 1.48747 1.51602 1.59598 2.69039 3.41664 3.61120 3.75460 4.07698 4.19582 4.26639 4.32274 4.36830 4.47629 4.53016 4.70515 4.71802 4.79057 4.82875 4.92084 4.99289 5.00848 5.04750 5.12876 5.18642 5.23723 5.33883 5.35349 5.46744 5.50246 5.54258 5.72213 5.89320 6.04591 6.51803 6.70953 6.76968 7.45067 8.12480 8.64325 9.50922 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.014261 C = 0.008498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.102891 B = 1962.952096 C = 3294.070056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.079 3.921 3 C -0.169 4.169 4 N -0.671 5.671 5 C 0.085 3.915 6 C 0.165 3.835 7 H 0.008 0.992 8 C -0.121 4.121 9 C -0.104 4.104 10 C -0.133 4.133 11 C 0.177 3.823 12 N -0.596 5.596 13 C -0.161 4.161 14 H 0.076 0.924 15 C -0.063 4.063 16 N -0.955 5.955 17 Si 0.943 3.057 18 H -0.269 1.269 19 H -0.306 1.306 20 H -0.305 1.305 21 H 0.072 0.928 22 H 0.031 0.969 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.330 0.670 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.049 0.951 37 H -0.012 1.012 38 H 0.048 0.952 39 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.970 7.092 -6.614 12.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.031 4.031 3 C -0.228 4.228 4 N -0.301 5.301 5 C -0.045 4.045 6 C 0.059 3.941 7 H 0.026 0.974 8 C -0.161 4.161 9 C -0.141 4.141 10 C -0.172 4.172 11 C 0.051 3.949 12 N -0.320 5.320 13 C -0.293 4.293 14 H 0.094 0.906 15 C -0.255 4.255 16 N -0.606 5.606 17 Si 0.776 3.224 18 H -0.194 1.194 19 H -0.235 1.235 20 H -0.233 1.233 21 H 0.091 0.909 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.006 0.994 38 H 0.066 0.934 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 7.527 6.459 -6.734 11.989 hybrid contribution -0.852 0.298 0.150 0.915 sum 6.675 6.757 -6.585 11.557 Atomic orbital electron populations 1.21710 0.95432 1.00691 1.01299 1.21555 0.95382 0.92931 0.93264 1.22409 1.00995 0.96850 1.02537 1.60588 1.24851 1.39911 1.04730 1.21812 0.88745 0.96704 0.97196 1.20735 0.90048 0.89094 0.94271 0.97439 1.21912 0.96465 0.99560 0.98117 1.21356 0.98239 0.96720 0.97830 1.22038 0.96742 0.97977 1.00492 1.20541 0.93106 0.92811 0.88393 1.44331 1.20127 1.29539 1.37956 1.19328 0.86560 1.30993 0.92383 0.90639 1.25507 0.98961 1.05480 0.95549 1.70156 1.28631 1.53792 1.08031 0.85518 0.81394 0.76279 0.79249 1.19406 1.23482 1.23331 0.90870 0.94929 0.93579 0.91378 0.91008 0.92827 0.92707 0.85235 0.92560 0.94220 0.92586 0.90406 0.93144 0.90719 0.92040 0.93255 0.99422 0.93393 0.95618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.52 71.98 0.69 -3.48 16 2 C 0.08 2.37 3.20 44.92 0.14 2.52 16 3 C -0.17 -3.95 9.16 71.98 0.66 -3.29 16 4 N -0.67 -24.93 3.83 -491.58 -1.88 -26.81 16 5 C 0.08 2.97 4.24 86.30 0.37 3.33 16 6 C 0.16 6.49 3.13 44.97 0.14 6.64 16 7 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 8 C -0.12 -3.88 5.37 30.67 0.16 -3.72 16 9 C -0.10 -3.30 5.88 30.62 0.18 -3.12 16 10 C -0.13 -5.08 6.08 30.67 0.19 -4.90 16 11 C 0.18 8.76 5.25 86.36 0.45 9.21 16 12 N -0.60 -29.24 2.98 -675.24 -2.01 -31.25 16 13 C -0.16 -8.66 7.51 84.03 0.63 -8.03 16 14 H 0.08 4.02 5.88 -2.91 -0.02 4.01 16 15 C -0.06 -3.65 5.00 84.86 0.42 -3.23 16 16 N -0.95 -58.82 11.18 21.65 0.24 -58.58 16 17 Si 0.94 47.72 29.57 68.60 2.03 49.75 16 18 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 20 H -0.30 -15.74 7.11 99.48 0.71 -15.04 16 21 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 2.05 7.80 -2.39 -0.02 2.03 16 25 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.05 1.26 8.13 -2.38 -0.02 1.24 16 27 H 0.05 1.22 7.45 -2.39 -0.02 1.20 16 28 H 0.33 12.46 8.47 -89.70 -0.76 11.70 16 29 H 0.06 2.10 7.38 -2.39 -0.02 2.08 16 30 H 0.04 1.16 7.44 -2.39 -0.02 1.14 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.05 2.72 6.19 -2.39 -0.01 2.70 16 39 H 0.23 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -63.42 297.99 2.65 -60.77 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.23 Total: 14.19 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 4.04 Total: -8.07 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -3.65 Total: -116.64 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -63.42 2.65 -60.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.161 kcal (2) G-P(sol) polarization free energy of solvation -63.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds