Wall clock time and date at job start Mon Mar 30 2020 20:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46902 * 111.00277 * 2 1 4 4 C 1.46903 * 110.99895 * 123.95163 * 2 1 3 5 5 C 1.52998 * 112.84784 * 62.94411 * 4 2 1 6 6 N 1.46899 * 109.47496 * 45.97819 * 5 4 2 7 7 C 1.46899 * 111.00204 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47234 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47224 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00143 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00048 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00036 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00071 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47211 * 89.99920 * 13 11 9 15 15 H 1.48497 * 109.47211 * 210.00511 * 13 11 9 16 16 H 1.48503 * 109.46708 * 330.00064 * 13 11 9 17 17 C 1.53779 * 113.61303 * 194.13790 * 4 2 1 18 18 C 1.53956 * 87.01988 * 89.23125 * 17 4 2 19 19 C 1.53779 * 87.11063 * 25.36121 * 18 17 4 20 20 H 1.09007 * 109.47273 * 300.72694 * 1 2 3 21 21 H 1.09003 * 109.47486 * 60.72049 * 1 2 3 22 22 H 1.08994 * 109.47573 * 180.72501 * 1 2 3 23 23 H 1.08999 * 109.47576 * 177.64433 * 3 2 1 24 24 H 1.09004 * 109.46737 * 297.64279 * 3 2 1 25 25 H 1.09004 * 109.46931 * 57.63719 * 3 2 1 26 26 H 1.09004 * 109.46928 * 285.97577 * 5 4 2 27 27 H 1.08999 * 109.47029 * 165.98040 * 5 4 2 28 28 H 1.00902 * 110.99477 * 56.05029 * 6 5 4 29 29 H 1.09003 * 109.47300 * 300.00532 * 7 6 5 30 30 H 1.09001 * 109.46863 * 60.00127 * 7 6 5 31 31 H 1.09003 * 109.47368 * 300.00437 * 8 7 6 32 32 H 1.09001 * 109.47135 * 60.00240 * 8 7 6 33 33 H 0.97003 * 120.00231 * 180.02562 * 12 11 9 34 34 H 1.08999 * 113.61396 * 203.74835 * 17 4 2 35 35 H 1.09000 * 113.61947 * 334.65432 * 17 4 2 36 36 H 1.08998 * 113.53611 * 270.81229 * 18 17 4 37 37 H 1.08998 * 113.74492 * 139.94621 * 18 17 4 38 38 H 1.09002 * 113.61148 * 220.08933 * 19 18 17 39 39 H 1.09000 * 113.69067 * 89.19935 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6095 -2.2456 1.0871 6 7 1.8375 -2.7652 -0.2679 7 6 1.4776 -4.1868 -0.3542 8 6 1.7287 -4.6911 -1.7766 9 6 1.3590 -6.1493 -1.8652 10 1 0.9830 -6.6649 -0.9940 11 6 1.5018 -6.8254 -3.0584 12 7 1.9611 -6.1979 -4.1189 13 14 1.0442 -8.6332 -3.1680 14 1 -0.3843 -8.7597 -3.5533 15 1 1.8931 -9.2977 -4.1893 16 1 1.2601 -9.2793 -1.8485 17 6 3.4917 -0.5282 1.4007 18 6 3.0640 0.6340 2.3153 19 6 1.7288 -0.1060 2.5008 20 1 -0.3634 0.5251 0.8834 21 1 -0.3634 0.5026 -0.8964 22 1 -0.3634 -1.0275 0.0130 23 1 3.0842 1.3427 0.0422 24 1 1.6805 1.8815 -0.9104 25 1 1.6121 1.9078 0.8681 26 1 0.5564 -2.3555 1.3460 27 1 2.2185 -2.8044 1.7977 28 1 2.7929 -2.6162 -0.5562 29 1 2.0861 -4.7588 0.3465 30 1 0.4237 -4.3105 -0.1051 31 1 1.1206 -4.1192 -2.4776 32 1 2.7828 -4.5674 -2.0252 33 1 2.0612 -6.6735 -4.9584 34 1 3.9769 -1.3465 1.9327 35 1 4.0451 -0.2090 0.5175 36 1 2.9667 1.5858 1.7931 37 1 3.6511 0.7114 3.2304 38 1 0.8609 0.5535 2.5044 39 1 1.7297 -0.8089 3.3338 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165211184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:50:13 Heat of formation + Delta-G solvation = 33.048550 kcal Electronic energy + Delta-G solvation = -16176.584837 eV Core-core repulsion = 13734.167385 eV Total energy + Delta-G solvation = -2442.417452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52524 -35.48863 -34.13273 -32.82837 -30.06157 -27.92717 -26.55487 -25.44596 -24.26859 -22.97190 -21.38100 -20.42723 -18.66519 -16.39651 -16.17667 -15.44832 -14.94797 -14.69896 -14.37706 -13.78542 -13.69773 -13.29049 -12.69634 -12.48980 -12.35011 -12.15910 -12.08436 -11.70076 -11.43758 -11.20644 -10.98627 -10.86624 -10.70847 -10.54885 -10.35747 -10.00223 -9.88512 -9.25693 -9.06194 -8.28577 -8.01717 -7.56753 -5.93284 -3.95549 3.35907 3.41727 3.44963 3.96296 4.45615 4.52936 4.53764 4.76231 4.81570 5.15141 5.27948 5.37788 5.42409 5.52534 5.55683 5.64853 5.68628 5.73189 5.79473 5.80353 5.93519 5.95749 6.06396 6.12588 6.22192 6.25561 6.44689 6.52440 7.09035 7.25938 7.28340 7.65057 7.85021 7.94630 8.12844 8.21980 8.52460 9.12264 9.67719 11.18114 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050032 B = 0.004918 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.503857 B = 5692.302794 C = 5829.050355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.495 5.495 3 C 0.014 3.986 4 C 0.097 3.903 5 C 0.080 3.920 6 N -0.671 5.671 7 C 0.065 3.935 8 C 0.027 3.973 9 C -0.521 4.521 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.134 4.134 18 C -0.159 4.159 19 C -0.169 4.169 20 H 0.015 0.985 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.026 0.974 28 H 0.337 0.663 29 H 0.010 0.990 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 14.492 12.088 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.217 5.217 3 C -0.134 4.134 4 C 0.006 3.994 5 C -0.051 4.051 6 N -0.302 5.302 7 C -0.063 4.063 8 C -0.010 4.010 9 C -0.559 4.559 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.172 4.172 18 C -0.196 4.196 19 C -0.209 4.209 20 H 0.034 0.966 21 H 0.083 0.917 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.155 0.845 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.246 14.442 11.207 18.282 hybrid contribution 0.189 -1.040 1.148 1.561 sum 0.435 13.401 12.356 18.233 Atomic orbital electron populations 1.22307 0.86971 1.02907 0.99443 1.61819 1.07974 1.11895 1.39998 1.22781 1.00935 0.89692 1.00010 1.22259 0.95242 0.93946 0.87941 1.21818 1.00201 0.91618 0.91420 1.60432 1.29475 1.18361 1.21882 1.22159 0.98823 0.84981 1.00351 1.19036 0.97061 0.95052 0.89887 1.21203 1.43288 0.95565 0.95890 0.92893 1.24997 0.95371 0.98126 0.95849 1.69977 1.46059 1.36312 1.00892 0.86612 0.78370 0.85395 0.77707 1.20672 1.21258 1.19985 1.23151 0.95933 0.98399 0.99682 1.23347 0.97266 0.98825 1.00130 1.23536 0.97707 1.00233 0.99411 0.96616 0.91687 0.90282 0.90882 0.91854 0.95672 0.91810 0.95631 0.84526 0.97205 0.92747 0.95616 0.96890 0.93060 0.89803 0.90528 0.88868 0.91902 0.91786 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.24 60.06 0.55 0.97 16 2 N -0.50 -6.68 4.69 -234.46 -1.10 -7.78 16 3 C 0.01 0.15 7.78 60.07 0.47 0.62 16 4 C 0.10 1.24 0.84 -130.79 -0.11 1.13 16 5 C 0.08 1.21 4.51 -3.83 -0.02 1.19 16 6 N -0.67 -12.47 6.16 -113.78 -0.70 -13.17 16 7 C 0.07 1.42 5.62 -3.83 -0.02 1.40 16 8 C 0.03 0.73 5.23 -27.89 -0.15 0.58 16 9 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 10 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 13 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.13 -1.53 6.84 -25.83 -0.18 -1.71 16 18 C -0.16 -1.55 7.28 -25.83 -0.19 -1.74 16 19 C -0.17 -1.82 6.70 -25.92 -0.17 -2.00 16 20 H 0.02 0.18 6.92 -51.93 -0.36 -0.18 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.08 1.16 6.78 -51.93 -0.35 0.81 16 23 H 0.07 0.76 5.34 -51.93 -0.28 0.48 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.02 0.25 6.15 -51.93 -0.32 -0.07 16 26 H 0.06 0.98 7.40 -51.93 -0.38 0.59 16 27 H 0.03 0.38 7.89 -51.93 -0.41 -0.03 16 28 H 0.34 6.30 8.73 -39.29 -0.34 5.96 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 35 H 0.08 0.90 7.02 -51.93 -0.36 0.54 16 36 H 0.09 0.86 4.66 -51.93 -0.24 0.61 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.69 6.62 -51.93 -0.34 0.34 16 39 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -30.44 300.18 -8.51 -38.96 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.73 Total: 0.59 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.22 Total: -13.40 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -1.07 Total: -47.68 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.44 -8.51 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165211184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.004 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds