Wall clock time and date at job start Mon Mar 30 2020 20:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46902 * 111.00277 * 2 1 4 4 C 1.46903 * 110.99895 * 123.95163 * 2 1 3 5 5 C 1.52998 * 112.84784 * 62.94411 * 4 2 1 6 6 N 1.46899 * 109.47496 * 45.97819 * 5 4 2 7 7 C 1.46899 * 111.00204 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47234 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47224 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00143 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00048 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00036 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00071 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47211 * 89.99920 * 13 11 9 15 15 H 1.48497 * 109.47211 * 210.00511 * 13 11 9 16 16 H 1.48503 * 109.46708 * 330.00064 * 13 11 9 17 17 C 1.53779 * 113.61303 * 194.13790 * 4 2 1 18 18 C 1.53956 * 87.01988 * 89.23125 * 17 4 2 19 19 C 1.53779 * 87.11063 * 25.36121 * 18 17 4 20 20 H 1.09007 * 109.47273 * 300.72694 * 1 2 3 21 21 H 1.09003 * 109.47486 * 60.72049 * 1 2 3 22 22 H 1.08994 * 109.47573 * 180.72501 * 1 2 3 23 23 H 1.08999 * 109.47576 * 177.64433 * 3 2 1 24 24 H 1.09004 * 109.46737 * 297.64279 * 3 2 1 25 25 H 1.09004 * 109.46931 * 57.63719 * 3 2 1 26 26 H 1.09004 * 109.46928 * 285.97577 * 5 4 2 27 27 H 1.08999 * 109.47029 * 165.98040 * 5 4 2 28 28 H 1.00902 * 110.99477 * 56.05029 * 6 5 4 29 29 H 1.09003 * 109.47300 * 300.00532 * 7 6 5 30 30 H 1.09001 * 109.46863 * 60.00127 * 7 6 5 31 31 H 1.09003 * 109.47368 * 300.00437 * 8 7 6 32 32 H 1.09001 * 109.47135 * 60.00240 * 8 7 6 33 33 H 0.97003 * 120.00231 * 180.02562 * 12 11 9 34 34 H 1.08999 * 113.61396 * 203.74835 * 17 4 2 35 35 H 1.09000 * 113.61947 * 334.65432 * 17 4 2 36 36 H 1.08998 * 113.53611 * 270.81229 * 18 17 4 37 37 H 1.08998 * 113.74492 * 139.94621 * 18 17 4 38 38 H 1.09002 * 113.61148 * 220.08933 * 19 18 17 39 39 H 1.09000 * 113.69067 * 89.19935 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6095 -2.2456 1.0871 6 7 1.8375 -2.7652 -0.2679 7 6 1.4776 -4.1868 -0.3542 8 6 1.7287 -4.6911 -1.7766 9 6 1.3590 -6.1493 -1.8652 10 1 0.9830 -6.6649 -0.9940 11 6 1.5018 -6.8254 -3.0584 12 7 1.9611 -6.1979 -4.1189 13 14 1.0442 -8.6332 -3.1680 14 1 -0.3843 -8.7597 -3.5533 15 1 1.8931 -9.2977 -4.1893 16 1 1.2601 -9.2793 -1.8485 17 6 3.4917 -0.5282 1.4007 18 6 3.0640 0.6340 2.3153 19 6 1.7288 -0.1060 2.5008 20 1 -0.3634 0.5251 0.8834 21 1 -0.3634 0.5026 -0.8964 22 1 -0.3634 -1.0275 0.0130 23 1 3.0842 1.3427 0.0422 24 1 1.6805 1.8815 -0.9104 25 1 1.6121 1.9078 0.8681 26 1 0.5564 -2.3555 1.3460 27 1 2.2185 -2.8044 1.7977 28 1 2.7929 -2.6162 -0.5562 29 1 2.0861 -4.7588 0.3465 30 1 0.4237 -4.3105 -0.1051 31 1 1.1206 -4.1192 -2.4776 32 1 2.7828 -4.5674 -2.0252 33 1 2.0612 -6.6735 -4.9584 34 1 3.9769 -1.3465 1.9327 35 1 4.0451 -0.2090 0.5175 36 1 2.9667 1.5858 1.7931 37 1 3.6511 0.7114 3.2304 38 1 0.8609 0.5535 2.5044 39 1 1.7297 -0.8089 3.3338 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165211184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:50:13 Heat of formation + Delta-G solvation = 11.845795 kcal Electronic energy + Delta-G solvation = -16177.504258 eV Core-core repulsion = 13734.167385 eV Total energy + Delta-G solvation = -2443.336872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47197 -37.14929 -35.07687 -34.91997 -31.82945 -29.19300 -27.78855 -26.34394 -25.93521 -24.34509 -22.41714 -22.30444 -19.62597 -18.48575 -17.40950 -16.66004 -16.33982 -16.23014 -15.71972 -15.20950 -14.79639 -14.56345 -14.17939 -14.01806 -13.78690 -13.26795 -13.21683 -12.98031 -12.83040 -12.65658 -12.53146 -12.36392 -12.15588 -11.88021 -11.62399 -11.46172 -11.33499 -11.11413 -10.85996 -10.54887 -9.10479 -8.96680 -8.18411 -6.30290 1.40726 1.42841 1.53694 2.41729 2.98120 3.14634 3.42486 3.61457 3.78429 3.92239 3.98223 4.37892 4.44457 4.50504 4.56950 4.60235 4.68806 4.73171 4.75771 4.79646 4.80678 4.88016 4.96764 5.09462 5.11101 5.17023 5.19617 5.22156 5.37951 5.46949 5.71370 5.81570 6.18065 6.26605 6.30239 6.44979 6.66993 6.87640 7.38923 8.93817 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050032 B = 0.004918 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.503857 B = 5692.302794 C = 5829.050355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.521 5.521 3 C 0.016 3.984 4 C 0.090 3.910 5 C 0.081 3.919 6 N -0.675 5.675 7 C 0.085 3.915 8 C 0.035 3.965 9 C -0.545 4.545 10 H 0.059 0.941 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.263 1.263 17 C -0.136 4.136 18 C -0.146 4.146 19 C -0.161 4.161 20 H 0.032 0.968 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.336 0.664 29 H 0.013 0.987 30 H 0.053 0.947 31 H -0.008 1.008 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 14.638 13.569 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.243 5.243 3 C -0.131 4.131 4 C -0.001 4.001 5 C -0.049 4.049 6 N -0.305 5.305 7 C -0.044 4.044 8 C -0.002 4.002 9 C -0.584 4.584 10 H 0.077 0.923 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.187 1.187 17 C -0.173 4.173 18 C -0.182 4.182 19 C -0.201 4.201 20 H 0.050 0.950 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.153 0.847 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.010 0.990 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.186 14.607 12.711 19.364 hybrid contribution 0.215 -1.039 0.667 1.253 sum 0.401 13.568 13.378 19.058 Atomic orbital electron populations 1.22218 0.87100 1.01619 1.00289 1.61772 1.08153 1.13544 1.40838 1.22794 1.01183 0.88411 1.00735 1.22280 0.96384 0.92272 0.89131 1.21898 1.00183 0.93500 0.89289 1.60344 1.29395 1.16109 1.24635 1.21771 0.98766 0.86971 0.96940 1.18871 0.94673 0.94379 0.92278 1.21627 1.43609 0.96682 0.96458 0.92255 1.25987 0.94956 1.03485 0.95296 1.70118 1.46923 1.38568 1.01594 0.85411 0.78305 0.78858 0.78227 1.19731 1.20626 1.18712 1.23173 0.94811 0.99369 0.99976 1.23291 0.96364 0.98321 1.00270 1.23489 0.98475 1.00181 0.97958 0.94989 0.91580 0.92606 0.90377 0.91758 0.94216 0.92159 0.94897 0.84680 0.96871 0.92869 0.98971 0.99290 0.92752 0.89673 0.91125 0.88042 0.90471 0.91487 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 9.24 127.69 1.18 2.08 16 2 N -0.52 -13.54 4.69 -895.69 -4.20 -17.74 16 3 C 0.02 0.33 7.78 127.69 0.99 1.32 16 4 C 0.09 2.18 0.84 4.05 0.00 2.19 16 5 C 0.08 2.40 4.51 86.30 0.39 2.79 16 6 N -0.67 -25.34 6.16 -513.89 -3.17 -28.50 16 7 C 0.08 3.74 5.62 86.30 0.49 4.22 16 8 C 0.04 1.97 5.23 29.84 0.16 2.13 16 9 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 10 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 11 C 0.00 0.04 5.46 84.66 0.46 0.50 16 12 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 13 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 17 C -0.14 -2.86 6.84 31.18 0.21 -2.65 16 18 C -0.15 -2.42 7.28 31.18 0.23 -2.20 16 19 C -0.16 -3.08 6.70 31.12 0.21 -2.87 16 20 H 0.03 0.68 6.92 -2.38 -0.02 0.67 16 21 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 1.65 6.78 -2.39 -0.02 1.63 16 23 H 0.08 1.48 5.34 -2.39 -0.01 1.46 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.04 0.68 6.15 -2.38 -0.01 0.67 16 26 H 0.06 1.81 7.40 -2.38 -0.02 1.80 16 27 H 0.03 0.93 7.89 -2.39 -0.02 0.91 16 28 H 0.34 12.75 8.73 -89.69 -0.78 11.97 16 29 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.08 1.76 7.93 -2.39 -0.02 1.75 16 35 H 0.07 1.57 7.02 -2.39 -0.02 1.55 16 36 H 0.10 1.54 4.66 -2.39 -0.01 1.53 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.25 6.62 -2.39 -0.02 1.24 16 39 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -65.41 300.18 -0.28 -65.69 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.23 Total: 15.79 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 4.55 Total: -24.35 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -7.09 Total: -104.27 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.41 -0.28 -65.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165211184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.539 kcal (2) G-P(sol) polarization free energy of solvation -65.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds