Wall clock time and date at job start Mon Mar 30 2020 20:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46896 * 110.99808 * 2 1 4 4 C 1.52993 * 109.47413 * 293.95402 * 3 2 1 5 5 C 1.53000 * 109.47634 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47585 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99921 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00534 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99661 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00391 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47443 * 59.99928 * 10 8 6 12 12 H 1.48509 * 109.47123 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46848 * 299.99692 * 10 8 6 14 14 C 1.46896 * 111.00038 * 123.95178 * 2 1 3 15 15 C 1.53000 * 109.47150 * 66.04815 * 14 2 1 16 16 H 1.09004 * 110.46087 * 297.41207 * 15 14 2 17 17 C 1.54381 * 110.41540 * 174.99954 * 15 14 2 18 18 C 1.54257 * 105.14978 * 217.42327 * 17 15 14 19 19 C 1.54377 * 105.06382 * 359.94367 * 18 17 15 20 20 N 1.48567 * 104.59159 * 23.85582 * 19 18 17 21 21 H 1.08995 * 109.46953 * 296.04492 * 1 2 3 22 22 H 1.08997 * 109.46687 * 56.04492 * 1 2 3 23 23 H 1.08999 * 109.46652 * 176.04909 * 1 2 3 24 24 H 1.09003 * 109.47067 * 53.95459 * 3 2 1 25 25 H 1.08997 * 109.47280 * 173.95010 * 3 2 1 26 26 H 1.09003 * 109.47051 * 300.00067 * 4 3 2 27 27 H 1.09002 * 109.47497 * 59.99961 * 4 3 2 28 28 H 1.09003 * 109.46938 * 300.00114 * 5 4 3 29 29 H 1.08997 * 109.47187 * 59.99530 * 5 4 3 30 30 H 0.97002 * 120.00005 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.47354 * 306.05168 * 14 2 1 32 32 H 1.08999 * 109.47399 * 186.05012 * 14 2 1 33 33 H 1.09002 * 110.32526 * 98.47145 * 17 15 14 34 34 H 1.08998 * 110.32190 * 336.36786 * 17 15 14 35 35 H 1.08995 * 110.32672 * 118.84838 * 18 17 15 36 36 H 1.09013 * 110.32172 * 240.94943 * 18 17 15 37 37 H 1.08999 * 110.41555 * 142.63458 * 19 18 17 38 38 H 1.09004 * 110.41760 * 264.96131 * 19 18 17 39 39 H 1.00898 * 110.99860 * 80.07822 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 6 2.1803 3.4856 -1.3185 6 6 1.8223 4.1611 -2.6171 7 1 1.2593 3.6255 -3.3671 8 6 2.2135 5.4629 -2.8479 9 7 2.8987 6.1153 -1.9344 10 14 1.7692 6.3004 -4.4574 11 1 0.2919 6.3385 -4.6043 12 1 2.3020 7.6866 -4.4576 13 1 2.3599 5.5423 -5.5894 14 6 1.9955 -0.7659 1.1376 15 6 1.6316 -2.2426 0.9704 16 1 0.5492 -2.3713 0.9762 17 6 2.2802 -3.0870 2.0882 18 6 2.6969 -4.4064 1.4065 19 6 2.2643 -4.2507 -0.0672 20 7 2.2108 -2.7826 -0.2885 21 1 -0.3633 0.4512 0.9233 22 1 -0.3632 0.5740 -0.8524 23 1 -0.3632 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0797 1.3445 0.1083 26 1 2.0659 1.5015 -2.1491 27 1 0.5472 2.0845 -1.4265 28 1 1.7463 4.0418 -0.4875 29 1 3.2645 3.4583 -1.2104 30 1 3.1737 7.0313 -2.0965 31 1 1.5611 -0.3872 2.0628 32 1 3.0798 -0.6610 1.1757 33 1 1.5591 -3.2822 2.8820 34 1 3.1550 -2.5756 2.4898 35 1 3.7765 -4.5419 1.4719 36 1 2.1817 -5.2497 1.8668 37 1 2.9990 -4.7085 -0.7296 38 1 1.2821 -4.6966 -0.2243 39 1 3.1334 -2.4076 -0.4506 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234269944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:51:34 Heat of formation + Delta-G solvation = -11.390963 kcal Electronic energy + Delta-G solvation = -15688.127854 eV Core-core repulsion = 13243.783360 eV Total energy + Delta-G solvation = -2444.344494 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.12005 -36.90257 -33.62194 -31.58306 -29.94060 -29.75294 -27.03161 -26.04800 -23.75970 -21.84705 -20.89558 -20.25989 -19.73407 -16.26546 -16.15347 -15.61621 -15.26752 -14.83647 -14.38546 -14.16909 -13.87342 -13.61372 -13.17536 -12.24652 -11.94108 -11.83970 -11.79689 -11.66157 -11.49647 -11.17684 -11.04770 -10.98768 -10.74218 -10.61623 -10.46520 -10.37554 -9.52243 -9.24872 -8.99753 -8.62575 -8.28341 -7.90432 -5.94117 -3.95805 3.37983 3.41578 3.44844 3.98933 4.37319 4.52346 4.60056 4.64079 4.89281 5.05687 5.28773 5.30927 5.37872 5.41581 5.58631 5.62197 5.66515 5.74077 5.75597 5.78485 5.90008 5.94820 6.05604 6.12194 6.28742 6.41484 6.72504 6.80343 6.87930 7.21396 7.37950 7.49163 7.51308 7.75321 7.91081 8.07029 8.50898 9.11405 9.67844 11.17412 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.057534 B = 0.004169 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.553629 B = 6714.488044 C = 6822.689085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.528 5.528 3 C 0.055 3.945 4 C -0.103 4.103 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.056 3.944 15 C 0.076 3.924 16 H 0.085 0.915 17 C -0.154 4.154 18 C -0.157 4.157 19 C 0.036 3.964 20 N -0.645 5.645 21 H 0.016 0.984 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 -18.779 8.129 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.252 5.252 3 C -0.072 4.072 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.073 4.073 15 C -0.034 4.034 16 H 0.103 0.897 17 C -0.194 4.194 18 C -0.196 4.196 19 C -0.094 4.094 20 N -0.272 5.272 21 H 0.034 0.966 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.869 -18.783 7.275 20.229 hybrid contribution 0.299 0.830 0.716 1.136 sum -1.570 -17.954 7.991 19.714 Atomic orbital electron populations 1.22406 0.87921 1.01501 1.00456 1.61994 1.07667 1.14415 1.41104 1.22310 0.99331 0.86487 0.99048 1.21634 1.00027 0.97992 0.94487 1.19073 0.96178 0.89474 0.96870 1.21234 1.34626 0.97608 1.02086 0.92710 1.25027 0.95274 0.97509 0.96722 1.69962 1.38456 1.11310 1.34040 0.86660 0.78746 0.78439 0.84161 1.20282 1.21364 1.20208 1.22245 1.00034 0.92554 0.92420 1.22676 0.99917 0.93191 0.87660 0.89672 1.22972 1.01061 0.96174 0.99225 1.22911 1.01193 0.97794 0.97728 1.23048 1.01451 0.90808 0.94088 1.63279 1.27742 1.02819 1.33404 0.96559 0.90759 0.91793 0.95676 0.91538 0.92531 0.93467 0.96942 0.96690 0.93047 0.94751 0.91058 0.91402 0.91512 0.91820 0.91496 0.91097 0.90672 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.13 60.07 0.55 0.92 16 2 N -0.53 -8.19 4.63 -242.92 -1.13 -9.31 16 3 C 0.06 1.00 4.96 -3.83 -0.02 0.98 16 4 C -0.10 -2.24 5.08 -26.73 -0.14 -2.37 16 5 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 6 C -0.52 -15.07 9.11 -34.45 -0.31 -15.39 16 7 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 10 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.06 0.71 4.36 -3.83 -0.02 0.69 16 15 C 0.08 0.84 3.01 -65.98 -0.20 0.64 16 16 H 0.09 0.99 6.74 -51.93 -0.35 0.64 16 17 C -0.15 -1.38 6.55 -25.35 -0.17 -1.55 16 18 C -0.16 -1.28 7.00 -25.35 -0.18 -1.46 16 19 C 0.04 0.34 7.47 -2.18 -0.02 0.32 16 20 N -0.65 -7.52 7.30 -102.63 -0.75 -8.27 16 21 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.07 1.17 6.30 -51.93 -0.33 0.84 16 23 H 0.06 0.84 6.54 -51.93 -0.34 0.50 16 24 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 25 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 1.01 6.47 -51.93 -0.34 0.67 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.59 7.82 -51.93 -0.41 0.19 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.34 4.01 8.64 -39.29 -0.34 3.67 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -30.47 307.07 -9.37 -39.84 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.11 Total: -1.92 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.73 Total: -15.25 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -1.14 Total: -44.39 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.47 -9.37 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234269944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.445 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds