Wall clock time and date at job start Mon Mar 30 2020 20:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.67523 * 2 1 4 4 C 1.54992 * 110.62216 * 237.03711 * 2 1 3 5 5 C 1.54808 * 102.09561 * 204.47407 * 4 2 1 6 6 H 1.08997 * 110.48893 * 262.07161 * 5 4 2 7 7 N 1.46503 * 110.48981 * 139.55297 * 5 4 2 8 8 C 1.46500 * 120.00013 * 352.71579 * 7 5 4 9 9 C 1.34770 * 120.00067 * 172.71601 * 7 5 4 10 10 O 1.21693 * 120.00176 * 0.02562 * 9 7 5 11 11 C 1.46372 * 120.00220 * 179.97438 * 9 7 5 12 12 H 1.08002 * 120.00150 * 0.02562 * 11 9 7 13 13 C 1.40056 * 120.00024 * 179.97438 * 11 9 7 14 14 N 1.30665 * 119.99723 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99826 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47107 * 59.99774 * 15 13 11 17 17 H 1.48499 * 109.47025 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46906 * 300.00388 * 15 13 11 19 19 C 1.54102 * 104.30317 * 20.80993 * 5 4 2 20 20 H 1.08998 * 109.87990 * 242.66921 * 19 5 4 21 21 C 1.53003 * 109.87597 * 121.52219 * 19 5 4 22 22 O 1.44054 * 107.13354 * 2.13702 * 19 5 4 23 23 H 1.08997 * 109.46973 * 182.96100 * 1 2 3 24 24 H 1.08991 * 109.47450 * 302.96587 * 1 2 3 25 25 H 1.09002 * 109.46756 * 62.96697 * 1 2 3 26 26 H 1.09003 * 110.91214 * 86.27246 * 4 2 1 27 27 H 1.09010 * 110.90768 * 322.67485 * 4 2 1 28 28 H 1.08995 * 109.47088 * 275.67618 * 8 7 5 29 29 H 1.08996 * 109.47169 * 155.66981 * 8 7 5 30 30 H 1.09002 * 109.46948 * 35.67517 * 8 7 5 31 31 H 0.97005 * 119.99574 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.47285 * 68.71166 * 21 19 5 33 33 H 1.09000 * 109.47116 * 188.71271 * 21 19 5 34 34 H 1.09003 * 109.47426 * 308.70970 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0759 -0.7893 -1.2171 5 6 3.4796 -1.2166 -0.7235 6 1 4.2410 -0.5344 -1.1016 7 7 3.7726 -2.5908 -1.1382 8 6 2.7302 -3.4032 -1.7704 9 6 5.0011 -3.1077 -0.9380 10 8 5.8668 -2.4330 -0.4124 11 6 5.2937 -4.4808 -1.3518 12 1 4.5253 -5.0798 -1.8179 13 6 6.5705 -5.0177 -1.1443 14 7 7.5003 -4.2929 -0.5809 15 14 6.9441 -6.7700 -1.6731 16 1 6.7335 -6.9008 -3.1372 17 1 8.3551 -7.0960 -1.3443 18 1 6.0405 -7.7063 -0.9575 19 6 3.3875 -1.1246 0.8120 20 1 4.0893 -0.3767 1.1812 21 6 3.6996 -2.4870 1.4344 22 8 2.0384 -0.7352 1.1337 23 1 -0.3633 -1.0263 0.0531 24 1 -0.3634 0.5591 0.8621 25 1 -0.3633 0.4671 -0.9154 26 1 2.1510 -0.1476 -2.0950 27 1 1.4550 -1.6606 -1.4259 28 1 2.1138 -3.8669 -1.0003 29 1 3.1938 -4.1785 -2.3804 30 1 2.1075 -2.7686 -2.4010 31 1 8.3845 -4.6649 -0.4368 32 1 4.7530 -2.7227 1.2836 33 1 3.4834 -2.4566 2.5024 34 1 3.0846 -3.2523 0.9609 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307254708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:50 Heat of formation + Delta-G solvation = -90.912001 kcal Electronic energy + Delta-G solvation = -16864.664023 eV Core-core repulsion = 14183.319482 eV Total energy + Delta-G solvation = -2681.344541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27722 -38.99603 -35.82824 -34.60065 -33.57688 -32.01697 -29.73601 -28.12535 -27.53339 -24.60185 -22.78681 -21.98198 -20.31576 -18.38645 -17.98160 -17.51452 -16.75895 -16.54895 -15.93728 -15.70580 -15.18500 -14.36137 -14.17372 -13.83652 -13.49964 -13.44700 -13.22565 -13.06109 -12.83607 -12.80529 -12.54846 -12.31104 -12.12736 -12.04449 -11.86536 -11.74534 -11.62069 -10.88052 -10.60471 -9.73917 -9.04973 -8.26204 -6.81042 1.40457 1.43190 1.54297 2.23968 2.48540 2.71818 2.92636 3.52999 3.67487 3.85853 4.00471 4.07042 4.24605 4.43552 4.49569 4.51643 4.62124 4.68828 4.78284 4.87165 4.89329 5.03162 5.05009 5.13013 5.21272 5.32573 5.40308 5.42433 5.73662 6.03003 6.16435 6.41504 6.90812 7.44519 8.50813 8.70105 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.050715 B = 0.007705 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.970041 B = 3632.995627 C = 3852.377418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.064 3.936 3 H 0.076 0.924 4 C -0.151 4.151 5 C 0.124 3.876 6 H 0.054 0.946 7 N -0.638 5.638 8 C 0.089 3.911 9 C 0.550 3.450 10 O -0.621 6.621 11 C -0.571 4.571 12 H 0.091 0.909 13 C 0.032 3.968 14 N -0.820 5.820 15 Si 0.990 3.010 16 H -0.254 1.254 17 H -0.277 1.277 18 H -0.256 1.256 19 C 0.076 3.924 20 H 0.051 0.949 21 C -0.135 4.135 22 O -0.389 6.389 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.273 0.727 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 3.399 -2.954 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 H 0.094 0.906 4 C -0.188 4.188 5 C 0.019 3.981 6 H 0.072 0.928 7 N -0.374 5.374 8 C -0.053 4.053 9 C 0.356 3.644 10 O -0.508 6.508 11 C -0.607 4.607 12 H 0.109 0.891 13 C -0.184 4.184 14 N -0.449 5.449 15 Si 0.810 3.190 16 H -0.178 1.178 17 H -0.202 1.202 18 H -0.180 1.180 19 C 0.017 3.983 20 H 0.068 0.932 21 C -0.193 4.193 22 O -0.310 6.310 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.423 3.743 -2.428 13.200 hybrid contribution 0.904 -0.546 -0.055 1.057 sum -11.519 3.198 -2.483 12.209 Atomic orbital electron populations 1.21746 0.90735 1.03068 1.03717 1.23333 0.96861 0.95074 0.84028 0.90618 1.23627 0.93631 1.02076 0.99482 1.22008 0.97570 0.85463 0.93084 0.92793 1.47835 1.12473 1.12365 1.64768 1.21729 0.90806 0.95599 0.97185 1.18406 0.79786 0.88123 0.78083 1.90546 1.47479 1.63418 1.49406 1.21515 0.98587 0.97697 1.42881 0.89074 1.26908 0.95257 1.03751 0.92453 1.70178 1.03432 1.38651 1.32647 0.85177 0.77780 0.76185 0.79855 1.17767 1.20174 1.18025 1.22907 0.83604 0.96032 0.95798 0.93150 1.21817 1.02191 0.96091 0.99169 1.88889 1.27634 1.73991 1.40449 0.92192 0.91611 0.88513 0.87809 0.87956 0.94195 0.91165 0.89759 0.91759 0.92470 0.93184 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.66 71.98 0.69 -1.88 16 2 C 0.06 1.69 3.98 31.28 0.12 1.81 16 3 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 4 C -0.15 -4.13 5.54 31.89 0.18 -3.96 16 5 C 0.12 4.92 3.24 45.98 0.15 5.07 16 6 H 0.05 2.36 8.07 -2.39 -0.02 2.34 16 7 N -0.64 -28.53 1.84 -822.15 -1.51 -30.05 16 8 C 0.09 3.12 9.05 127.77 1.16 4.28 16 9 C 0.55 31.07 5.68 86.36 0.49 31.56 16 10 O -0.62 -40.36 13.05 -4.33 -0.06 -40.42 16 11 C -0.57 -31.65 8.76 24.83 0.22 -31.43 16 12 H 0.09 4.52 5.88 -2.91 -0.02 4.50 16 13 C 0.03 1.74 5.50 85.31 0.47 2.21 16 14 N -0.82 -49.72 11.83 21.84 0.26 -49.46 16 15 Si 0.99 40.63 29.56 68.60 2.03 42.66 16 16 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 17 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 C 0.08 3.11 3.90 30.97 0.12 3.23 16 20 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 21 C -0.14 -6.18 8.17 71.98 0.59 -5.60 16 22 O -0.39 -13.87 10.90 -148.98 -1.62 -15.49 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.10 2.61 5.23 -2.38 -0.01 2.60 16 28 H 0.04 1.33 7.76 -2.39 -0.02 1.31 16 29 H 0.07 2.55 5.79 -2.39 -0.01 2.54 16 30 H 0.08 2.28 5.92 -2.39 -0.01 2.27 16 31 H 0.27 15.12 8.29 -92.70 -0.77 14.35 16 32 H 0.06 3.16 5.22 -2.39 -0.01 3.14 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 2.46 6.75 -2.39 -0.02 2.45 16 Total: -1.00 -73.06 267.88 4.37 -68.69 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.09 Total: 18.78 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 4.19 Total: 5.30 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.26 Total: -79.51 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -1.68 Total: -55.91 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -73.06 4.37 -68.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307254708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.225 kcal (2) G-P(sol) polarization free energy of solvation -73.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds