Wall clock time and date at job start Mon Mar 30 2020 20:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47447 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47131 * 300.00058 * 3 2 1 6 6 H 1.48502 * 109.47017 * 59.99391 * 3 2 1 7 7 C 1.37873 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99512 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00226 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47079 * 184.66162 * 9 7 2 11 11 C 1.46902 * 111.00173 * 164.11987 * 10 9 7 12 12 C 1.52997 * 109.47327 * 189.16853 * 11 10 9 13 13 H 1.09007 * 109.46771 * 306.01238 * 12 11 10 14 14 N 1.46896 * 109.47249 * 186.01615 * 12 11 10 15 15 C 1.50705 * 109.47063 * 66.01110 * 12 11 10 16 16 N 1.34771 * 120.00007 * 279.99640 * 15 12 11 17 17 O 1.21277 * 119.99676 * 100.00252 * 15 12 11 18 18 C 1.46907 * 110.99857 * 288.07269 * 10 9 7 19 19 C 1.52994 * 117.50194 * 5.49776 * 18 10 9 20 20 C 1.52997 * 117.49990 * 296.83444 * 18 10 9 21 21 H 0.97001 * 120.00159 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46895 * 64.66794 * 9 7 2 23 23 H 1.08990 * 109.47467 * 304.66329 * 9 7 2 24 24 H 1.09000 * 109.46603 * 309.17173 * 11 10 9 25 25 H 1.08997 * 109.46720 * 69.16400 * 11 10 9 26 26 H 1.00905 * 110.99532 * 305.44554 * 14 12 11 27 27 H 1.00902 * 111.00166 * 69.39775 * 14 12 11 28 28 H 0.96998 * 120.00504 * 0.02562 * 16 15 12 29 29 H 0.96999 * 120.00146 * 179.97438 * 16 15 12 30 30 H 1.08999 * 115.54823 * 151.16602 * 18 10 9 31 31 H 1.09006 * 117.49372 * 359.97438 * 19 18 10 32 32 H 1.08996 * 117.50260 * 145.01625 * 19 18 10 33 33 H 1.08996 * 117.50256 * 214.97956 * 20 18 10 34 34 H 1.09003 * 117.49833 * 359.97438 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2017 -3.6133 0.1146 11 6 1.5148 -4.8551 0.4944 12 6 2.5514 -5.9310 0.8242 13 1 3.2424 -6.0383 -0.0121 14 7 1.8702 -7.2103 1.0636 15 6 3.3160 -5.5301 2.0594 16 7 4.3213 -4.6369 1.9694 17 8 3.0268 -6.0112 3.1344 18 6 2.9567 -3.7897 -1.1332 19 6 2.7408 -2.7574 -2.2415 20 6 2.1683 -4.1694 -2.3882 21 1 -0.4850 0.8400 -0.0004 22 1 0.6882 -2.5945 -0.9269 23 1 0.5636 -2.5211 0.8472 24 1 0.8903 -4.6720 1.3688 25 1 0.8911 -5.1929 -0.3332 26 1 1.1609 -7.1146 1.7748 27 1 1.4783 -7.5768 0.2090 28 1 4.5525 -4.2519 1.1096 29 1 4.8132 -4.3786 2.7645 30 1 3.9575 -4.2070 -1.0221 31 1 2.0382 -1.9474 -2.0449 32 1 3.5994 -2.4957 -2.8598 33 1 2.6505 -4.8361 -3.1031 34 1 1.0894 -4.2887 -2.2880 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127924760.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:48:58 Heat of formation + Delta-G solvation = -31.077287 kcal Electronic energy + Delta-G solvation = -16510.787076 eV Core-core repulsion = 13864.329913 eV Total energy + Delta-G solvation = -2646.457162 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85646 -39.53446 -35.98023 -34.96410 -34.35031 -33.38516 -29.82631 -27.31522 -24.90362 -24.56880 -22.90815 -21.41583 -20.11798 -18.54626 -18.36308 -18.01301 -17.33069 -16.68610 -16.14832 -15.85156 -15.51699 -15.33795 -14.55344 -14.28577 -14.12565 -13.81900 -13.36793 -13.29020 -12.69681 -12.65488 -12.35233 -11.99233 -11.79270 -11.48602 -11.25873 -10.92933 -10.79309 -10.58450 -10.40459 -9.72975 -8.99860 -8.16204 -6.21520 1.41555 1.44251 1.55488 1.80261 2.41680 2.73307 2.98860 3.16348 3.23269 3.81902 3.94819 4.01498 4.19822 4.22737 4.23863 4.33468 4.60653 4.78718 4.88301 5.04400 5.13906 5.19688 5.34606 5.67757 5.71148 5.97423 6.06066 6.10143 6.34525 6.52955 6.56555 6.66941 6.91825 7.44474 7.53308 8.94566 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.029109 B = 0.008312 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.675960 B = 3367.879757 C = 3701.052206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.002 4.002 3 Si 0.961 3.039 4 H -0.258 1.258 5 H -0.283 1.283 6 H -0.289 1.289 7 C -0.490 4.490 8 H 0.070 0.930 9 C 0.206 3.794 10 N -0.501 5.501 11 C 0.036 3.964 12 C 0.093 3.907 13 H 0.123 0.877 14 N -0.827 5.827 15 C 0.532 3.468 16 N -0.825 5.825 17 O -0.597 6.597 18 C 0.023 3.977 19 C -0.187 4.187 20 C -0.209 4.209 21 H 0.260 0.740 22 H -0.025 1.025 23 H -0.010 1.010 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.347 0.653 27 H 0.360 0.640 28 H 0.413 0.587 29 H 0.402 0.598 30 H 0.142 0.858 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.606 -9.152 -4.409 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.199 4.199 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.215 1.215 7 C -0.528 4.528 8 H 0.088 0.912 9 C 0.079 3.921 10 N -0.224 5.224 11 C -0.095 4.095 12 C -0.023 4.023 13 H 0.141 0.859 14 N -0.358 5.358 15 C 0.316 3.684 16 N -0.387 5.387 17 O -0.478 6.478 18 C -0.086 4.086 19 C -0.224 4.224 20 C -0.248 4.248 21 H 0.069 0.931 22 H -0.007 1.007 23 H 0.008 0.992 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.244 0.756 29 H 0.232 0.768 30 H 0.160 0.840 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.215 -9.607 -3.220 13.044 hybrid contribution -1.479 1.879 -0.841 2.535 sum 6.736 -7.728 -4.061 11.027 Atomic orbital electron populations 1.70096 1.07724 1.27431 1.52756 1.25818 0.95535 1.02889 0.95685 0.85449 0.79450 0.79325 0.77105 1.18138 1.20945 1.21533 1.21351 0.93746 0.90099 1.47651 0.91158 1.19441 0.90219 0.89169 0.93229 1.62117 1.27279 1.03047 1.29943 1.22823 0.95931 0.91246 0.99509 1.21239 0.96288 0.88803 0.95972 0.85894 1.58631 1.37745 1.24753 1.14713 1.20609 0.79782 0.77787 0.90174 1.43622 1.35480 1.44596 1.14996 1.90649 1.68574 1.57055 1.31476 1.22883 0.98627 1.03836 0.83259 1.23446 1.04124 0.93526 1.01321 1.23339 0.99178 0.99447 1.02847 0.93112 1.00695 0.99219 0.93476 0.93474 0.84010 0.82507 0.75567 0.76787 0.84032 0.89018 0.87648 0.86369 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.88 13.29 21.45 0.28 -54.60 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.49 -25.27 6.61 25.60 0.17 -25.10 16 8 H 0.07 3.51 7.69 -2.91 -0.02 3.48 16 9 C 0.21 10.01 4.27 85.56 0.36 10.37 16 10 N -0.50 -18.22 3.80 -875.53 -3.33 -21.55 16 11 C 0.04 1.15 4.47 86.30 0.39 1.54 16 12 C 0.09 2.49 3.19 44.17 0.14 2.63 16 13 H 0.12 2.72 6.97 -2.38 -0.02 2.70 16 14 N -0.83 -20.26 8.92 -171.80 -1.53 -21.79 16 15 C 0.53 17.07 7.17 87.66 0.63 17.69 16 16 N -0.82 -21.54 8.62 -173.54 -1.50 -23.04 16 17 O -0.60 -23.86 17.22 -3.02 -0.05 -23.91 16 18 C 0.02 0.68 4.70 44.91 0.21 0.89 16 19 C -0.19 -6.28 8.81 30.62 0.27 -6.01 16 20 C -0.21 -5.89 9.27 30.62 0.28 -5.60 16 21 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 22 H -0.02 -1.29 6.10 -2.39 -0.01 -1.30 16 23 H -0.01 -0.58 7.82 -2.39 -0.02 -0.60 16 24 H 0.05 1.76 7.88 -2.39 -0.02 1.74 16 25 H 0.05 1.44 7.01 -2.39 -0.02 1.42 16 26 H 0.35 9.12 8.72 -89.69 -0.78 8.34 16 27 H 0.36 6.71 9.08 -89.69 -0.81 5.90 16 28 H 0.41 9.42 7.47 -92.71 -0.69 8.73 16 29 H 0.40 9.62 8.93 -92.71 -0.83 8.80 16 30 H 0.14 3.20 7.21 -2.39 -0.02 3.18 16 31 H 0.09 4.03 4.81 -2.38 -0.01 4.02 16 32 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.07 2.13 7.13 -2.39 -0.02 2.12 16 Total: -1.00 -66.53 278.06 -3.14 -69.67 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -1.96 Total: 33.75 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 2.92 Total: -3.24 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -6.07 Total: -120.97 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -66.53 -3.14 -69.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127924760.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.595 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds