Wall clock time and date at job start Mon Mar 30 2020 20:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00035 * 2 1 4 4 O 1.20826 * 120.00173 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99852 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.53371 * 300.10133 * 5 3 2 7 7 C 1.53041 * 109.50247 * 60.19882 * 5 3 2 8 8 N 1.46842 * 109.52303 * 179.11956 * 7 5 3 9 9 C 1.46898 * 110.99638 * 174.16027 * 8 7 5 10 10 C 1.46839 * 111.19848 * 298.25577 * 8 7 5 11 11 C 1.53036 * 109.52203 * 61.74814 * 10 8 7 12 12 C 1.53112 * 109.50311 * 179.97438 * 5 3 2 13 13 H 1.08999 * 109.57813 * 302.34406 * 12 5 3 14 14 C 1.50706 * 109.52265 * 62.50490 * 12 5 3 15 15 H 1.07998 * 119.99629 * 359.67952 * 14 12 5 16 16 C 1.37875 * 119.99955 * 179.68523 * 14 12 5 17 17 N 1.31515 * 119.99932 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99908 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47474 * 89.99404 * 18 16 14 20 20 H 1.48504 * 109.47121 * 209.99526 * 18 16 14 21 21 H 1.48499 * 109.47026 * 329.99368 * 18 16 14 22 22 H 1.09006 * 109.46798 * 300.00102 * 1 2 3 23 23 H 1.09001 * 109.47365 * 59.99532 * 1 2 3 24 24 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46276 * 59.10172 * 7 5 3 26 26 H 1.09004 * 109.44956 * 299.13001 * 7 5 3 27 27 H 1.09007 * 109.46924 * 188.16286 * 9 8 7 28 28 H 1.08999 * 109.47729 * 308.16208 * 9 8 7 29 29 H 1.09000 * 109.47492 * 68.16486 * 9 8 7 30 30 H 1.08997 * 109.46735 * 301.73056 * 10 8 7 31 31 H 1.09009 * 109.46140 * 181.75747 * 10 8 7 32 32 H 1.09000 * 109.50481 * 180.88297 * 11 10 8 33 33 H 1.08996 * 109.53928 * 60.77814 * 11 10 8 34 34 H 0.97003 * 119.99476 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9569 0.7795 0.8895 7 6 4.1146 0.5853 -1.2509 8 7 5.5799 0.6802 -1.2614 9 6 6.1493 -0.0897 -2.3754 10 6 6.0210 2.0800 -1.3094 11 6 5.5298 2.8141 -0.0596 12 6 4.0014 2.7428 -0.0002 13 1 3.5787 3.2485 -0.8683 14 6 3.5152 3.4128 1.2592 15 1 2.9476 2.8501 1.9855 16 6 3.7948 4.7441 1.4838 17 7 4.4863 5.4291 0.5994 18 14 3.1916 5.5747 3.0445 19 1 4.2185 5.4357 4.1080 20 1 2.9484 7.0150 2.7764 21 1 1.9281 4.9339 3.4896 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 3.7127 1.0723 -2.1394 26 1 3.8186 -0.4638 -1.2464 27 1 7.2344 -0.1228 -2.2770 28 1 5.7516 -1.1043 -2.3567 29 1 5.8845 0.3869 -3.3193 30 1 5.6102 2.5600 -2.1975 31 1 7.1098 2.1166 -1.3476 32 1 5.8440 3.8569 -0.1031 33 1 5.9513 2.3437 0.8287 34 1 4.6834 6.3656 0.7577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149859750.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:49:50 Heat of formation + Delta-G solvation = -85.415477 kcal Electronic energy + Delta-G solvation = -16720.587788 eV Core-core repulsion = 14039.481593 eV Total energy + Delta-G solvation = -2681.106194 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.93312 -37.98411 -35.75225 -33.76689 -31.60442 -30.24624 -27.33373 -26.86172 -24.40367 -23.13863 -21.56357 -20.26540 -18.65915 -16.73558 -16.52551 -16.03547 -15.54730 -14.72304 -14.44359 -14.29784 -13.85335 -13.17381 -12.77270 -12.60934 -12.47222 -11.89539 -11.76966 -11.73897 -11.35161 -10.93934 -10.74112 -10.53433 -10.47008 -10.23238 -10.02069 -9.70982 -9.51446 -9.15052 -8.75744 -8.24838 -7.85225 -5.91190 -3.92736 3.06222 3.36711 3.38226 3.43173 3.48712 4.46583 4.52718 5.37629 5.40527 5.43594 5.49508 5.55619 5.62057 5.65534 5.78137 5.89568 6.01428 6.07080 6.09723 6.19931 6.46661 6.52431 6.66483 7.02718 7.06537 7.29116 7.49547 7.58235 7.82163 7.97343 8.11751 8.44224 8.62452 9.03407 9.68672 11.16164 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.012178 C = 0.007974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.213883 B = 2298.710798 C = 3510.396059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.374 6.374 3 C 0.459 3.541 4 O -0.473 6.473 5 C -0.066 4.066 6 H 0.103 0.897 7 C 0.069 3.931 8 N -0.540 5.540 9 C 0.027 3.973 10 C 0.052 3.948 11 C -0.106 4.106 12 C 0.065 3.935 13 H 0.032 0.968 14 C -0.490 4.490 15 H 0.051 0.949 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.276 1.276 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.029 0.971 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.019 0.981 30 H 0.025 0.975 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 -10.352 -4.065 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.292 6.292 3 C 0.300 3.700 4 O -0.356 6.356 5 C -0.085 4.085 6 H 0.121 0.879 7 C -0.059 4.059 8 N -0.265 5.265 9 C -0.122 4.122 10 C -0.076 4.076 11 C -0.144 4.144 12 C 0.046 3.954 13 H 0.050 0.950 14 C -0.528 4.528 15 H 0.069 0.931 16 C -0.139 4.139 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.201 1.201 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.109 0.891 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.671 -10.041 -3.664 10.710 hybrid contribution -0.903 0.906 0.078 1.282 sum -1.574 -9.135 -3.586 9.939 Atomic orbital electron populations 1.23077 0.78171 1.02487 1.02117 1.86543 1.22113 1.35290 1.85284 1.24077 0.92371 0.80709 0.72862 1.90689 1.66494 1.35851 1.42562 1.21376 0.84971 1.02802 0.99400 0.87881 1.21969 0.87825 0.99771 0.96312 1.61949 1.08177 1.13175 1.43207 1.22326 1.00180 0.97889 0.91800 1.22363 0.98905 0.86440 0.99861 1.21718 0.97678 1.01382 0.93639 1.18665 0.92212 0.85947 0.98550 0.94995 1.20955 1.32838 0.95182 1.03841 0.93115 1.24849 0.95265 0.97214 0.96540 1.69849 1.40098 1.08824 1.34776 0.86612 0.79133 0.78670 0.83695 1.20823 1.21357 1.20116 0.92364 0.92578 0.89061 0.95243 0.90869 0.91678 0.91954 0.96214 0.95628 0.92095 0.88034 0.93304 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.68 10.49 -39.25 -0.41 -7.09 16 3 C 0.46 9.83 6.84 36.01 0.25 10.07 16 4 O -0.47 -11.80 14.61 -18.75 -0.27 -12.07 16 5 C -0.07 -1.40 2.26 -91.69 -0.21 -1.60 16 6 H 0.10 2.16 8.14 -51.93 -0.42 1.74 16 7 C 0.07 1.25 4.68 -3.83 -0.02 1.24 16 8 N -0.54 -9.47 4.91 -242.96 -1.19 -10.67 16 9 C 0.03 0.36 9.62 60.06 0.58 0.94 16 10 C 0.05 0.99 5.46 -3.84 -0.02 0.97 16 11 C -0.11 -2.45 5.12 -26.65 -0.14 -2.58 16 12 C 0.06 1.62 1.32 -91.65 -0.12 1.50 16 13 H 0.03 0.90 8.04 -51.93 -0.42 0.48 16 14 C -0.49 -13.69 7.09 -34.44 -0.24 -13.94 16 15 H 0.05 1.44 7.45 -52.49 -0.39 1.05 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 17 N -0.90 -25.81 11.35 55.43 0.63 -25.18 16 18 Si 0.89 22.16 29.54 -169.99 -5.02 17.13 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 22 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 23 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 24 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.75 8.02 -51.93 -0.42 0.34 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.06 8.12 -51.92 -0.42 0.63 16 32 H 0.10 2.61 6.15 -51.93 -0.32 2.29 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 277.85 15.07 4.19 4.19 Total: -1.00 -30.72 277.85 -6.36 -37.07 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.32 Total: -3.19 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 1.05 Total: -0.20 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.56 Total: -35.85 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.69 Total: -19.16 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.72 -6.36 -37.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149859750.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.344 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds