Wall clock time and date at job start Mon Mar 30 2020 20:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99748 * 2 1 4 4 C 1.53002 * 109.47718 * 270.00212 * 3 2 1 5 5 C 1.50698 * 109.47644 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99550 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00046 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46967 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47161 * 119.99738 * 9 7 5 12 12 H 1.48496 * 109.47121 * 239.99766 * 9 7 5 13 13 C 1.34770 * 120.00071 * 180.02562 * 2 1 3 14 14 O 1.21283 * 120.00107 * 175.35059 * 13 2 1 15 15 C 1.50696 * 120.00075 * 355.34322 * 13 2 1 16 16 H 1.09002 * 109.82421 * 50.60974 * 15 13 2 17 17 C 1.54376 * 109.83543 * 289.72137 * 15 13 2 18 18 C 1.55452 * 102.18702 * 219.18215 * 17 15 13 19 19 C 1.54940 * 100.98912 * 34.03783 * 18 17 15 20 20 O 1.43237 * 109.83194 * 171.48943 * 15 13 2 21 21 H 1.09007 * 109.46949 * 95.11405 * 1 2 3 22 22 H 1.08999 * 109.46776 * 215.11410 * 1 2 3 23 23 H 1.09003 * 109.47188 * 335.11521 * 1 2 3 24 24 H 1.09007 * 109.47031 * 150.00044 * 3 2 1 25 25 H 1.09001 * 109.47561 * 30.00532 * 3 2 1 26 26 H 1.09007 * 109.47007 * 59.99817 * 4 3 2 27 27 H 1.09001 * 109.46865 * 300.00745 * 4 3 2 28 28 H 0.96998 * 119.99960 * 180.02562 * 8 7 5 29 29 H 1.09005 * 110.84961 * 337.31978 * 17 15 13 30 30 H 1.09000 * 110.85383 * 100.93355 * 17 15 13 31 31 H 1.09004 * 111.05606 * 276.11534 * 18 17 15 32 32 H 1.09003 * 111.14707 * 151.98998 * 18 17 15 33 33 H 1.09009 * 110.31013 * 204.69283 * 19 18 17 34 34 H 1.08993 * 110.39615 * 82.56853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7106 -1.4425 5 6 3.2065 3.0154 -1.4424 6 1 3.4764 3.4830 -0.5071 7 6 3.5508 3.6127 -2.6364 8 7 3.2216 3.0435 -3.7754 9 14 4.4848 5.2304 -2.6364 10 1 4.7322 5.6591 -1.2362 11 1 5.7821 5.0530 -3.3368 12 1 3.6820 6.2655 -3.3359 13 6 2.1389 -1.1671 -0.0005 14 8 3.3488 -1.1688 -0.0857 15 6 1.3892 -2.4701 0.1048 16 1 0.5870 -2.4957 -0.6326 17 6 0.8010 -2.6228 1.5240 18 6 1.0191 -4.1354 1.8086 19 6 2.3533 -4.3870 1.0622 20 8 2.2856 -3.5656 -0.1143 21 1 -0.3633 -0.0916 -1.0236 22 1 -0.3633 -0.8406 0.5911 23 1 -0.3634 0.9323 0.4324 24 1 3.1500 1.1384 0.5139 25 1 1.6085 2.0284 0.5139 26 1 1.5000 1.8409 -1.9563 27 1 3.0415 0.9509 -1.9564 28 1 3.4642 3.4635 -4.6154 29 1 1.3501 -2.0105 2.2394 30 1 -0.2601 -2.3739 1.5330 31 1 0.2126 -4.7338 1.3847 32 1 1.1252 -4.3231 2.8771 33 1 2.4396 -5.4379 0.7854 34 1 3.1980 -4.0895 1.6833 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167567114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:50:13 Heat of formation + Delta-G solvation = -110.476932 kcal Electronic energy + Delta-G solvation = -16056.606870 eV Core-core repulsion = 13374.413929 eV Total energy + Delta-G solvation = -2682.192940 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.48748 -39.43194 -36.94132 -35.24423 -33.27469 -32.26908 -30.39085 -27.87567 -26.78313 -24.48165 -22.82860 -22.68798 -20.23773 -18.72004 -18.51580 -17.57375 -16.83242 -16.76205 -16.63041 -15.91617 -15.23262 -14.65537 -14.60128 -14.28517 -14.03389 -13.94710 -13.40023 -13.29253 -12.94596 -12.87254 -12.62277 -12.52048 -12.09448 -11.93396 -11.85233 -11.83301 -11.42983 -11.20408 -10.61786 -10.28859 -9.56544 -8.24366 -6.37558 1.37517 1.39878 1.52586 1.56233 2.00587 2.39653 2.93470 3.08997 3.39170 3.56172 3.83531 4.06777 4.17481 4.28630 4.38417 4.44081 4.54126 4.68264 4.76095 4.78693 4.85451 4.93024 4.94702 4.99086 5.19989 5.29660 5.45086 5.58547 5.80444 5.91148 6.15813 6.49134 6.78662 7.21464 7.32420 8.88387 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.054925 B = 0.005548 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.666571 B = 5046.098283 C = 5219.507885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.612 5.612 3 C 0.133 3.867 4 C 0.022 3.978 5 C -0.544 4.544 6 H 0.066 0.934 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.973 3.027 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.481 3.519 14 O -0.589 6.589 15 C 0.068 3.932 16 H 0.124 0.876 17 C -0.138 4.138 18 C -0.138 4.138 19 C 0.032 3.968 20 O -0.393 6.393 21 H 0.054 0.946 22 H 0.107 0.893 23 H 0.091 0.909 24 H 0.047 0.953 25 H 0.095 0.905 26 H 0.001 0.999 27 H -0.032 1.032 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.326 -12.212 13.182 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.345 5.345 3 C 0.011 3.989 4 C -0.016 4.016 5 C -0.582 4.582 6 H 0.085 0.915 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.797 3.203 10 H -0.181 1.181 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.270 3.730 14 O -0.469 6.469 15 C 0.007 3.993 16 H 0.142 0.858 17 C -0.175 4.175 18 C -0.175 4.175 19 C -0.043 4.043 20 O -0.311 6.311 21 H 0.073 0.927 22 H 0.125 0.875 23 H 0.109 0.891 24 H 0.065 0.935 25 H 0.113 0.887 26 H 0.019 0.981 27 H -0.013 1.013 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.595 -12.237 12.790 20.630 hybrid contribution 0.895 0.946 -0.621 1.443 sum -9.699 -11.290 12.169 19.226 Atomic orbital electron populations 1.22254 0.76840 1.05610 1.02866 1.48131 1.08894 1.05414 1.72085 1.21454 0.95932 0.83809 0.97730 1.19213 0.95049 0.94613 0.92696 1.21600 1.36614 1.06852 0.93162 0.91531 1.26068 0.96844 1.02071 0.95006 1.70137 1.48079 1.41200 0.98127 0.85281 0.77880 0.78298 0.78855 1.18144 1.20825 1.19665 1.21991 0.88101 0.87175 0.75783 1.90666 1.17203 1.87956 1.51078 1.22853 0.91146 0.83348 1.01999 0.85829 1.23236 1.04010 0.98495 0.91772 1.23309 0.96863 0.94453 1.02908 1.23742 0.98557 0.95839 0.86196 1.88504 1.66729 1.37995 1.37899 0.92687 0.87518 0.89068 0.93452 0.88730 0.98101 1.01336 0.92704 0.91049 0.84995 0.87677 0.87283 0.87448 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 9.99 127.77 1.28 2.80 16 2 N -0.61 -22.44 2.87 -846.73 -2.43 -24.88 16 3 C 0.13 5.95 5.35 86.38 0.46 6.42 16 4 C 0.02 1.27 5.30 29.85 0.16 1.43 16 5 C -0.54 -32.50 9.11 25.60 0.23 -32.26 16 6 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -59.80 13.29 21.45 0.28 -59.51 16 9 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 C 0.48 19.23 6.87 87.66 0.60 19.83 16 14 O -0.59 -30.98 16.17 15.63 0.25 -30.72 16 15 C 0.07 1.88 3.08 30.31 0.09 1.97 16 16 H 0.12 2.85 7.70 -2.39 -0.02 2.83 16 17 C -0.14 -2.30 5.55 31.90 0.18 -2.13 16 18 C -0.14 -1.80 7.16 32.10 0.23 -1.57 16 19 C 0.03 0.70 7.78 72.65 0.57 1.27 16 20 O -0.39 -12.82 10.58 -130.31 -1.38 -14.20 16 21 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.11 1.54 4.73 -2.39 -0.01 1.53 16 23 H 0.09 1.85 7.84 -2.39 -0.02 1.83 16 24 H 0.05 2.31 7.49 -2.38 -0.02 2.29 16 25 H 0.09 3.61 7.86 -2.39 -0.02 3.59 16 26 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 27 H -0.03 -2.14 8.14 -2.39 -0.02 -2.16 16 28 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.07 1.39 7.84 -2.38 -0.02 1.37 16 30 H 0.13 1.17 6.75 -2.39 -0.02 1.15 16 31 H 0.10 0.93 8.14 -2.38 -0.02 0.92 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -84.88 282.67 4.08 -80.80 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 1.07 Total: 2.58 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.26 Total: -1.90 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.15 Total: -84.39 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.13 Total: -44.92 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -84.88 4.08 -80.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167567114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.680 kcal (2) G-P(sol) polarization free energy of solvation -84.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds