Wall clock time and date at job start Mon Mar 30 2020 20:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99741 * 2 1 4 4 C 1.53004 * 109.47173 * 269.99886 * 3 2 1 5 5 C 1.50698 * 109.47269 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00248 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00036 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00007 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00280 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47124 * 59.99228 * 9 7 5 11 11 H 1.48496 * 109.47305 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47060 * 299.99743 * 9 7 5 13 13 C 1.34772 * 120.00332 * 180.02562 * 2 1 3 14 14 O 1.21288 * 119.99991 * 185.12679 * 13 2 1 15 15 C 1.50695 * 120.00054 * 5.11754 * 13 2 1 16 16 H 1.09007 * 110.67889 * 311.98141 * 15 13 2 17 17 C 1.54991 * 110.62022 * 74.94360 * 15 13 2 18 18 C 1.54811 * 102.09558 * 155.52173 * 17 15 13 19 19 C 1.54102 * 104.18620 * 339.12408 * 18 17 15 20 20 O 1.43744 * 107.29250 * 357.96801 * 19 18 17 21 21 H 1.08998 * 109.46868 * 265.16630 * 1 2 3 22 22 H 1.09000 * 109.47259 * 25.16993 * 1 2 3 23 23 H 1.08999 * 109.46471 * 145.16745 * 1 2 3 24 24 H 1.09003 * 109.47412 * 29.99510 * 3 2 1 25 25 H 1.08997 * 109.47647 * 149.99761 * 3 2 1 26 26 H 1.08998 * 109.47026 * 300.00377 * 4 3 2 27 27 H 1.09003 * 109.47055 * 60.00151 * 4 3 2 28 28 H 0.96993 * 120.00301 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.90512 * 37.32495 * 17 15 13 30 30 H 1.08998 * 110.90950 * 273.72715 * 17 15 13 31 31 H 1.08999 * 110.49077 * 220.44677 * 18 17 15 32 32 H 1.09002 * 110.48256 * 97.79486 * 18 17 15 33 33 H 1.08999 * 109.87396 * 117.39325 * 19 18 17 34 34 H 1.08997 * 109.87670 * 238.54193 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2054 3.0159 -1.4426 6 1 3.4747 3.4840 -0.5073 7 6 3.5495 3.6132 -2.6366 8 7 3.2211 3.0435 -3.7756 9 14 4.4834 5.2310 -2.6367 10 1 5.7812 5.0534 -1.9372 11 1 4.7307 5.6597 -4.0368 12 1 3.6810 6.2658 -1.9362 13 6 2.1390 -1.1671 -0.0005 14 8 3.3482 -1.1692 0.0933 15 6 1.3901 -2.4696 -0.1175 16 1 0.5506 -2.4947 0.5774 17 6 0.9013 -2.6895 -1.5718 18 6 0.7671 -4.2303 -1.6395 19 6 1.6637 -4.7381 -0.4937 20 8 2.2746 -3.5871 0.1132 21 1 -0.3633 -0.0866 1.0240 22 1 -0.3634 0.9301 -0.4371 23 1 -0.3632 -0.8436 -0.5870 24 1 1.6083 2.0284 0.5138 25 1 3.1499 1.1386 0.5138 26 1 3.0416 0.9508 -1.9563 27 1 1.5001 1.8408 -1.9564 28 1 3.4635 3.4635 -4.6156 29 1 1.6403 -2.3316 -2.2888 30 1 -0.0625 -2.2074 -1.7354 31 1 1.1263 -4.6028 -2.5988 32 1 -0.2679 -4.5305 -1.4757 33 1 1.0595 -5.2685 0.2424 34 1 2.4332 -5.4001 -0.8908 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167567234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:50:15 Heat of formation + Delta-G solvation = -109.667809 kcal Electronic energy + Delta-G solvation = -16081.882090 eV Core-core repulsion = 13399.724236 eV Total energy + Delta-G solvation = -2682.157854 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41951 -39.51805 -36.97451 -35.22333 -33.24534 -32.27633 -30.37783 -27.88600 -26.80177 -24.60984 -22.92098 -22.42893 -20.28484 -18.79198 -18.42352 -17.57106 -16.91439 -16.64753 -16.21405 -16.07730 -15.56324 -14.70315 -14.54236 -14.33606 -14.29881 -13.90439 -13.42464 -13.21905 -12.88798 -12.82022 -12.66013 -12.53495 -12.27564 -11.90038 -11.85185 -11.69062 -11.44927 -10.94254 -10.59413 -10.54190 -9.57293 -8.23837 -6.36301 1.38645 1.43258 1.50160 1.53057 1.87034 2.40194 3.01682 3.09685 3.38820 3.62012 3.88786 4.03397 4.12645 4.22957 4.34960 4.37074 4.53620 4.65589 4.78433 4.80872 4.83190 4.90935 4.97907 5.03204 5.16471 5.26668 5.45814 5.57441 5.77610 5.84811 6.16492 6.45550 6.78573 7.17250 7.33225 8.88266 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.043393 B = 0.005840 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.113725 B = 4793.433214 C = 4887.657974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.610 5.610 3 C 0.131 3.869 4 C 0.026 3.974 5 C -0.547 4.547 6 H 0.064 0.936 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.258 1.258 13 C 0.500 3.500 14 O -0.587 6.587 15 C 0.067 3.933 16 H 0.132 0.868 17 C -0.145 4.145 18 C -0.142 4.142 19 C 0.034 3.966 20 O -0.393 6.393 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.048 0.952 26 H -0.029 1.029 27 H 0.005 0.995 28 H 0.265 0.735 29 H 0.047 0.953 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.215 -12.460 5.992 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.343 5.343 3 C 0.008 3.992 4 C -0.012 4.012 5 C -0.585 4.585 6 H 0.083 0.917 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.183 1.183 13 C 0.288 3.712 14 O -0.467 6.467 15 C 0.007 3.993 16 H 0.149 0.851 17 C -0.183 4.183 18 C -0.179 4.179 19 C -0.042 4.042 20 O -0.312 6.312 21 H 0.104 0.896 22 H 0.097 0.903 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.066 0.934 26 H -0.011 1.011 27 H 0.024 0.976 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.402 -12.442 5.983 17.905 hybrid contribution 0.790 0.862 -0.542 1.289 sum -10.613 -11.580 5.440 16.623 Atomic orbital electron populations 1.22248 0.76695 1.04872 1.03826 1.48048 1.08957 1.05228 1.72093 1.21469 0.96037 0.83569 0.98081 1.19188 0.95253 0.94524 0.92249 1.21534 1.36897 1.06970 0.93114 0.91736 1.26006 0.96759 1.01895 0.95017 1.70100 1.47955 1.41161 0.98043 0.85431 0.78996 0.78883 0.77315 1.19760 1.20676 1.18271 1.21108 0.87645 0.86504 0.75911 1.90670 1.16982 1.87958 1.51044 1.23134 0.92156 0.84296 0.99758 0.85083 1.23169 1.03080 0.98700 0.93310 1.22957 1.02530 0.92656 0.99786 1.23522 0.97441 0.87876 0.95345 1.88978 1.46164 1.18157 1.77943 0.89565 0.90308 0.88960 0.88854 0.93372 1.01091 0.97620 0.92668 0.93387 0.86265 0.89595 0.86693 0.89438 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.48 9.97 127.77 1.27 2.76 16 2 N -0.61 -22.26 2.87 -846.75 -2.43 -24.70 16 3 C 0.13 5.81 5.36 86.38 0.46 6.28 16 4 C 0.03 1.43 5.30 29.85 0.16 1.59 16 5 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 6 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 9 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 C 0.50 20.07 7.02 87.66 0.62 20.68 16 14 O -0.59 -30.76 16.14 15.00 0.24 -30.52 16 15 C 0.07 1.89 2.77 30.53 0.08 1.98 16 16 H 0.13 2.57 7.59 -2.38 -0.02 2.55 16 17 C -0.14 -3.36 6.13 31.89 0.20 -3.17 16 18 C -0.14 -2.28 7.01 31.59 0.22 -2.06 16 19 C 0.03 0.68 7.70 72.36 0.56 1.24 16 20 O -0.39 -12.68 10.82 -130.93 -1.42 -14.10 16 21 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.08 1.85 8.04 -2.39 -0.02 1.83 16 23 H 0.09 1.59 4.91 -2.39 -0.01 1.58 16 24 H 0.09 3.59 8.07 -2.39 -0.02 3.57 16 25 H 0.05 2.37 7.36 -2.39 -0.02 2.36 16 26 H -0.03 -1.90 8.14 -2.39 -0.02 -1.91 16 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.05 1.49 8.05 -2.39 -0.02 1.47 16 30 H 0.12 2.00 6.49 -2.39 -0.02 1.98 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -81.84 283.35 4.04 -77.80 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.07 Total: 4.26 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 4.26 Total: -2.07 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.15 Total: -82.58 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -1.17 Total: -44.62 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -81.84 4.04 -77.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167567234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.863 kcal (2) G-P(sol) polarization free energy of solvation -81.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds