Wall clock time and date at job start Mon Mar 30 2020 20:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48502 * 109.46874 * 94.69811 * 3 2 1 5 5 H 1.48498 * 109.47069 * 214.70120 * 3 2 1 6 6 H 1.48501 * 109.47075 * 334.70053 * 3 2 1 7 7 C 1.40041 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99893 * 8.99049 * 7 2 1 9 9 C 1.46372 * 120.00304 * 188.99135 * 7 2 1 10 10 O 1.21691 * 119.99979 * 13.24807 * 9 7 2 11 11 N 1.34784 * 120.00278 * 193.24972 * 9 7 2 12 12 C 1.47074 * 120.87647 * 354.88733 * 11 9 7 13 13 C 1.53696 * 108.27743 * 128.75931 * 12 11 9 14 14 N 1.46894 * 109.25751 * 54.07725 * 13 12 11 15 15 C 1.46902 * 111.00097 * 172.61102 * 14 13 12 16 16 C 1.52994 * 109.47050 * 294.30174 * 15 14 13 17 17 N 1.46902 * 109.47050 * 180.02562 * 16 15 14 18 18 C 1.46900 * 111.27189 * 296.76250 * 14 13 12 19 19 C 1.47074 * 120.88239 * 175.17093 * 11 9 7 20 20 H 0.96994 * 120.00332 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.62963 * 248.52125 * 12 11 9 22 22 H 1.08996 * 109.63328 * 9.10465 * 12 11 9 23 23 H 1.09004 * 109.64383 * 294.07729 * 13 12 11 24 24 H 1.08997 * 109.42641 * 173.94592 * 13 12 11 25 25 H 1.08996 * 109.47109 * 54.30584 * 15 14 13 26 26 H 1.08999 * 109.46939 * 174.30697 * 15 14 13 27 27 H 1.09000 * 109.47771 * 299.99763 * 16 15 14 28 28 H 1.08995 * 109.47393 * 59.99998 * 16 15 14 29 29 H 1.00900 * 110.99885 * 56.05159 * 17 16 15 30 30 H 1.00908 * 111.00033 * 180.02562 * 17 16 15 31 31 H 1.08998 * 109.48928 * 303.14251 * 18 14 13 32 32 H 1.08994 * 109.51779 * 183.07848 * 18 14 13 33 33 H 1.09006 * 109.62945 * 350.89063 * 19 11 9 34 34 H 1.09003 * 109.63203 * 111.47595 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5874 1.9891 1.3954 5 1 3.4850 1.4710 -0.7970 6 1 1.3919 2.6794 -0.5983 7 6 2.0070 -1.2127 0.0005 8 1 1.4770 -2.1425 -0.1452 9 6 3.4572 -1.2204 0.1986 10 8 4.0219 -0.2196 0.5993 11 7 4.1673 -2.3358 -0.0627 12 6 3.4942 -3.5879 -0.4401 13 6 4.1472 -4.1173 -1.7268 14 7 5.5977 -4.2293 -1.5233 15 6 6.2396 -4.8949 -2.6648 16 6 5.7623 -6.3463 -2.7432 17 7 6.4046 -7.0120 -3.8844 18 6 6.2036 -2.9150 -1.2714 19 6 5.6352 -2.3348 0.0281 20 1 -0.4850 0.8400 -0.0004 21 1 3.6076 -4.3200 0.3595 22 1 2.4360 -3.3958 -0.6172 23 1 3.9473 -3.4298 -2.5488 24 1 3.7364 -5.0984 -1.9646 25 1 5.9738 -4.3747 -3.5851 26 1 7.3217 -4.8748 -2.5356 27 1 6.0281 -6.8665 -1.8230 28 1 4.6802 -6.3665 -2.8724 29 1 7.4097 -6.9503 -3.8201 30 1 6.1051 -7.9728 -3.9580 31 1 5.9750 -2.2444 -2.0997 32 1 7.2842 -3.0239 -1.1791 33 1 5.9932 -1.3138 0.1606 34 1 5.9504 -2.9488 0.8718 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216694916.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:50:39 Heat of formation + Delta-G solvation = -32.941877 kcal Electronic energy + Delta-G solvation = -16224.912365 eV Core-core repulsion = 13578.374348 eV Total energy + Delta-G solvation = -2646.538017 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.12908 -37.24688 -35.06465 -33.06178 -32.83833 -30.79252 -28.40665 -26.72705 -24.85189 -23.28773 -21.60744 -20.65938 -18.85692 -16.86900 -16.41392 -15.86705 -15.38250 -15.11173 -14.73468 -14.43405 -14.02461 -13.86076 -13.46554 -13.29739 -12.47929 -12.21951 -12.07260 -11.69295 -11.60431 -11.31536 -11.04228 -10.76409 -10.72141 -10.45049 -10.30879 -9.42417 -9.02393 -8.91723 -8.26510 -7.89155 -7.48561 -6.62134 -4.83633 3.45340 3.49523 3.73136 3.82345 4.18324 4.28525 4.57932 4.63804 4.85260 5.11735 5.28743 5.41136 5.46381 5.51025 5.62781 5.70607 5.80240 5.85105 5.88117 6.00371 6.17526 6.33373 6.40496 6.57546 6.85060 7.03632 7.14676 7.23178 7.25422 7.63387 7.88421 8.31617 8.72500 9.14878 10.04154 10.38648 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.047027 B = 0.006651 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.258059 B = 4209.136338 C = 4511.192560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.102 3.898 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.322 1.322 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.554 3.446 10 O -0.617 6.617 11 N -0.635 5.635 12 C 0.126 3.874 13 C 0.039 3.961 14 N -0.538 5.538 15 C 0.057 3.943 16 C 0.063 3.937 17 N -0.853 5.853 18 C 0.046 3.954 19 C 0.125 3.875 20 H 0.282 0.718 21 H 0.054 0.946 22 H 0.101 0.899 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.338 0.662 30 H 0.343 0.657 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 -11.387 -5.225 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.116 4.116 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.254 1.254 7 C -0.569 4.569 8 H 0.108 0.892 9 C 0.363 3.637 10 O -0.510 6.510 11 N -0.369 5.369 12 C 0.001 3.999 13 C -0.090 4.090 14 N -0.263 5.263 15 C -0.072 4.072 16 C -0.068 4.068 17 N -0.383 5.383 18 C -0.083 4.083 19 C 0.000 4.000 20 H 0.092 0.908 21 H 0.072 0.928 22 H 0.119 0.881 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.750 -10.586 -5.038 15.248 hybrid contribution 0.576 0.334 -0.041 0.667 sum 10.326 -10.252 -5.079 15.412 Atomic orbital electron populations 1.69557 1.07940 1.30001 1.38304 1.25756 0.94718 1.02048 0.89064 0.85222 0.77714 0.77397 0.79679 1.20437 1.19097 1.25366 1.20774 0.89139 0.95796 1.51217 0.89154 1.18339 0.88314 0.80318 0.76698 1.90193 1.72559 1.33552 1.54675 1.47742 1.04584 1.11095 1.73479 1.21687 0.98216 0.85837 0.94130 1.22701 0.87345 1.00436 0.98508 1.61915 1.04127 1.21122 1.39183 1.21999 0.98690 0.94119 0.92389 1.21780 0.99585 0.94116 0.91318 1.58649 1.12296 1.21426 1.45929 1.22493 0.98414 0.88882 0.98523 1.21299 0.82508 1.01131 0.95027 0.90805 0.92810 0.88072 0.94239 0.90385 0.94230 0.91361 0.94623 0.90760 0.84958 0.84514 0.94583 0.90680 0.89454 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.59 13.92 55.55 0.77 -22.82 16 2 C 0.10 2.93 5.52 -17.37 -0.10 2.83 16 3 Si 0.97 25.78 25.88 -169.99 -4.40 21.38 16 4 H -0.28 -7.62 7.11 56.52 0.40 -7.21 16 5 H -0.27 -7.42 6.62 56.52 0.37 -7.05 16 6 H -0.32 -8.11 7.11 56.52 0.40 -7.71 16 7 C -0.53 -15.09 9.35 -35.64 -0.33 -15.43 16 8 H 0.09 2.51 6.02 -52.48 -0.32 2.20 16 9 C 0.55 14.97 7.32 -12.99 -0.10 14.88 16 10 O -0.62 -18.13 11.82 5.20 0.06 -18.07 16 11 N -0.63 -14.05 3.00 -173.84 -0.52 -14.57 16 12 C 0.13 2.33 6.54 -3.37 -0.02 2.31 16 13 C 0.04 0.61 5.48 -3.47 -0.02 0.59 16 14 N -0.54 -7.83 4.63 -234.03 -1.08 -8.92 16 15 C 0.06 0.69 5.22 -3.83 -0.02 0.67 16 16 C 0.06 0.66 6.72 -3.83 -0.03 0.64 16 17 N -0.85 -7.61 9.62 -10.37 -0.10 -7.71 16 18 C 0.05 0.71 5.62 -3.70 -0.02 0.69 16 19 C 0.12 2.34 6.58 -3.60 -0.02 2.32 16 20 H 0.28 7.40 8.29 -40.82 -0.34 7.06 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.10 2.01 5.41 -51.93 -0.28 1.73 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 25 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 26 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.83 6.40 -51.93 -0.33 0.49 16 29 H 0.34 2.54 8.99 -39.29 -0.35 2.19 16 30 H 0.34 2.44 9.08 -39.29 -0.36 2.09 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.98 7.99 -51.93 -0.41 0.57 16 33 H 0.09 1.78 7.09 -51.93 -0.37 1.41 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 270.29 15.07 4.07 4.07 Total: -1.00 -32.09 270.29 -6.70 -38.79 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.85 Total: -1.65 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -0.66 Total: 9.49 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.93 Total: -54.01 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.06 Total: -18.07 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -4.40 Total: 21.38 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.09 -6.70 -38.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216694916.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.851 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds