Wall clock time and date at job start Mon Mar 30 2020 20:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48502 * 109.46874 * 94.69811 * 3 2 1 5 5 H 1.48498 * 109.47069 * 214.70120 * 3 2 1 6 6 H 1.48501 * 109.47075 * 334.70053 * 3 2 1 7 7 C 1.40041 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99893 * 8.99049 * 7 2 1 9 9 C 1.46372 * 120.00304 * 188.99135 * 7 2 1 10 10 O 1.21691 * 119.99979 * 13.24807 * 9 7 2 11 11 N 1.34784 * 120.00278 * 193.24972 * 9 7 2 12 12 C 1.47074 * 120.87647 * 354.88733 * 11 9 7 13 13 C 1.53696 * 108.27743 * 128.75931 * 12 11 9 14 14 N 1.46894 * 109.25751 * 54.07725 * 13 12 11 15 15 C 1.46902 * 111.00097 * 172.61102 * 14 13 12 16 16 C 1.52994 * 109.47050 * 294.30174 * 15 14 13 17 17 N 1.46902 * 109.47050 * 180.02562 * 16 15 14 18 18 C 1.46900 * 111.27189 * 296.76250 * 14 13 12 19 19 C 1.47074 * 120.88239 * 175.17093 * 11 9 7 20 20 H 0.96994 * 120.00332 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.62963 * 248.52125 * 12 11 9 22 22 H 1.08996 * 109.63328 * 9.10465 * 12 11 9 23 23 H 1.09004 * 109.64383 * 294.07729 * 13 12 11 24 24 H 1.08997 * 109.42641 * 173.94592 * 13 12 11 25 25 H 1.08996 * 109.47109 * 54.30584 * 15 14 13 26 26 H 1.08999 * 109.46939 * 174.30697 * 15 14 13 27 27 H 1.09000 * 109.47771 * 299.99763 * 16 15 14 28 28 H 1.08995 * 109.47393 * 59.99998 * 16 15 14 29 29 H 1.00900 * 110.99885 * 56.05159 * 17 16 15 30 30 H 1.00908 * 111.00033 * 180.02562 * 17 16 15 31 31 H 1.08998 * 109.48928 * 303.14251 * 18 14 13 32 32 H 1.08994 * 109.51779 * 183.07848 * 18 14 13 33 33 H 1.09006 * 109.62945 * 350.89063 * 19 11 9 34 34 H 1.09003 * 109.63203 * 111.47595 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5874 1.9891 1.3954 5 1 3.4850 1.4710 -0.7970 6 1 1.3919 2.6794 -0.5983 7 6 2.0070 -1.2127 0.0005 8 1 1.4770 -2.1425 -0.1452 9 6 3.4572 -1.2204 0.1986 10 8 4.0219 -0.2196 0.5993 11 7 4.1673 -2.3358 -0.0627 12 6 3.4942 -3.5879 -0.4401 13 6 4.1472 -4.1173 -1.7268 14 7 5.5977 -4.2293 -1.5233 15 6 6.2396 -4.8949 -2.6648 16 6 5.7623 -6.3463 -2.7432 17 7 6.4046 -7.0120 -3.8844 18 6 6.2036 -2.9150 -1.2714 19 6 5.6352 -2.3348 0.0281 20 1 -0.4850 0.8400 -0.0004 21 1 3.6076 -4.3200 0.3595 22 1 2.4360 -3.3958 -0.6172 23 1 3.9473 -3.4298 -2.5488 24 1 3.7364 -5.0984 -1.9646 25 1 5.9738 -4.3747 -3.5851 26 1 7.3217 -4.8748 -2.5356 27 1 6.0281 -6.8665 -1.8230 28 1 4.6802 -6.3665 -2.8724 29 1 7.4097 -6.9503 -3.8201 30 1 6.1051 -7.9728 -3.9580 31 1 5.9750 -2.2444 -2.0997 32 1 7.2842 -3.0239 -1.1791 33 1 5.9932 -1.3138 0.1606 34 1 5.9504 -2.9488 0.8718 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216694916.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:50:39 Heat of formation + Delta-G solvation = -59.636635 kcal Electronic energy + Delta-G solvation = -16226.069936 eV Core-core repulsion = 13578.374348 eV Total energy + Delta-G solvation = -2647.695589 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70937 -38.90624 -36.31427 -35.02544 -34.38110 -32.22051 -29.78715 -28.55874 -26.20409 -24.70196 -22.93783 -21.98569 -20.57984 -18.74396 -18.11596 -17.17990 -16.78299 -16.35664 -16.15725 -16.05472 -15.63885 -15.20508 -14.78606 -14.58221 -14.21539 -14.00988 -13.96524 -13.26960 -12.92716 -12.79370 -12.65018 -12.41871 -12.24442 -12.17476 -11.62100 -11.41919 -11.23803 -10.01367 -9.63842 -9.55798 -9.18145 -8.81262 -7.02700 1.30172 1.34879 1.58001 2.06076 2.30867 2.57253 2.86150 3.28949 3.78667 3.90878 4.01615 4.06977 4.22269 4.32991 4.37959 4.47588 4.58998 4.65450 4.75302 4.80279 4.92002 4.96848 5.04642 5.12359 5.15556 5.65837 5.89564 5.99881 6.01705 6.21651 6.26563 6.60700 6.62517 7.11482 7.94894 8.24109 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.047027 B = 0.006651 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.258059 B = 4209.136338 C = 4511.192560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.071 3.929 3 Si 1.011 2.989 4 H -0.291 1.291 5 H -0.289 1.289 6 H -0.297 1.297 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.548 3.452 10 O -0.647 6.647 11 N -0.636 5.636 12 C 0.122 3.878 13 C 0.048 3.952 14 N -0.535 5.535 15 C 0.060 3.940 16 C 0.070 3.930 17 N -0.858 5.858 18 C 0.055 3.945 19 C 0.121 3.879 20 H 0.292 0.708 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.020 0.980 24 H 0.107 0.893 25 H 0.028 0.972 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.348 0.652 30 H 0.354 0.646 31 H 0.019 0.981 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.218 -12.872 -5.826 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.145 4.145 3 Si 0.843 3.157 4 H -0.219 1.219 5 H -0.216 1.216 6 H -0.227 1.227 7 C -0.588 4.588 8 H 0.105 0.895 9 C 0.356 3.644 10 O -0.542 6.542 11 N -0.369 5.369 12 C -0.001 4.001 13 C -0.080 4.080 14 N -0.260 5.260 15 C -0.068 4.068 16 C -0.061 4.061 17 N -0.390 5.390 18 C -0.074 4.074 19 C -0.002 4.002 20 H 0.103 0.897 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.039 0.961 24 H 0.125 0.875 25 H 0.046 0.954 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.037 0.963 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.988 -12.118 -5.664 17.311 hybrid contribution 0.246 0.692 0.146 0.748 sum 11.234 -11.426 -5.519 16.948 Atomic orbital electron populations 1.69550 1.08217 1.31114 1.38890 1.26216 0.95280 1.03683 0.89283 0.84619 0.76296 0.76388 0.78384 1.21862 1.21611 1.22693 1.21008 0.90236 0.95855 1.51739 0.89510 1.18303 0.88286 0.81286 0.76530 1.90162 1.73058 1.35054 1.55884 1.47755 1.06190 1.10899 1.72069 1.21832 0.97377 0.84642 0.96234 1.22578 0.88294 1.01235 0.95918 1.61924 1.03348 1.20285 1.40471 1.22049 0.99492 0.94613 0.90680 1.21640 0.99254 0.93136 0.92092 1.58604 1.13057 1.22279 1.45106 1.22399 1.00153 0.88988 0.95892 1.21491 0.80337 1.00760 0.97658 0.89739 0.91062 0.89866 0.96134 0.87524 0.95397 0.89624 0.94180 0.91431 0.83908 0.83256 0.96312 0.87285 0.91450 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.20 13.92 21.83 0.30 -47.90 16 2 C 0.07 4.12 5.52 85.30 0.47 4.59 16 3 Si 1.01 53.48 25.88 68.60 1.78 55.25 16 4 H -0.29 -15.92 7.11 99.48 0.71 -15.21 16 5 H -0.29 -16.31 6.62 99.48 0.66 -15.65 16 6 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 7 C -0.55 -31.69 9.35 24.83 0.23 -31.46 16 8 H 0.09 4.93 6.02 -2.91 -0.02 4.91 16 9 C 0.55 29.99 7.32 86.36 0.63 30.62 16 10 O -0.65 -38.53 11.82 -4.32 -0.05 -38.58 16 11 N -0.64 -27.97 3.00 -822.13 -2.47 -30.44 16 12 C 0.12 4.42 6.54 86.50 0.57 4.99 16 13 C 0.05 1.43 5.48 86.54 0.47 1.91 16 14 N -0.54 -14.13 4.63 -894.35 -4.14 -18.27 16 15 C 0.06 1.26 5.22 86.30 0.45 1.71 16 16 C 0.07 1.25 6.72 86.30 0.58 1.83 16 17 N -0.86 -12.74 9.62 -186.73 -1.80 -14.54 16 18 C 0.05 1.58 5.62 86.38 0.49 2.07 16 19 C 0.12 4.41 6.58 86.35 0.57 4.97 16 20 H 0.29 15.17 8.29 -92.71 -0.77 14.41 16 21 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 22 H 0.08 3.32 5.41 -2.39 -0.01 3.30 16 23 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.11 2.56 6.16 -2.39 -0.01 2.55 16 25 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 26 H 0.09 1.55 7.97 -2.39 -0.02 1.53 16 27 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 1.30 6.40 -2.39 -0.02 1.29 16 29 H 0.35 4.12 8.99 -89.69 -0.81 3.31 16 30 H 0.35 4.02 9.08 -89.69 -0.81 3.21 16 31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 2.46 7.99 -2.39 -0.02 2.45 16 33 H 0.07 2.73 7.09 -2.38 -0.02 2.71 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -68.32 270.29 -2.47 -70.79 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -0.55 Total: 2.47 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 4.46 Total: 21.23 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -8.10 Total: -111.15 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.05 Total: -38.58 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 1.78 Total: 55.25 kcal Total: -68.32 -2.47 -70.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216694916.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.149 kcal (2) G-P(sol) polarization free energy of solvation -68.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds