Wall clock time and date at job start Mon Mar 30 2020 20:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47360 * 2 1 4 4 C 1.46899 * 111.00216 * 169.99671 * 3 2 1 5 5 C 1.53240 * 109.33832 * 187.25134 * 4 3 2 6 6 N 1.47086 * 108.52260 * 306.17153 * 5 4 3 7 7 C 1.34778 * 120.87781 * 231.18816 * 6 5 4 8 8 O 1.21581 * 119.99712 * 184.98755 * 7 6 5 9 9 N 1.34771 * 120.00256 * 4.71361 * 7 6 5 10 10 C 1.37188 * 120.00017 * 175.18575 * 9 7 6 11 11 H 1.08001 * 120.00439 * 0.02562 * 10 9 7 12 12 C 1.38881 * 119.99852 * 179.97438 * 10 9 7 13 13 N 1.31479 * 119.99593 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00279 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47345 * 89.99720 * 14 12 10 16 16 H 1.48504 * 109.47057 * 209.99994 * 14 12 10 17 17 H 1.48506 * 109.46906 * 329.99765 * 14 12 10 18 18 C 1.47079 * 118.23680 * 51.45960 * 6 5 4 19 19 C 1.46904 * 110.99775 * 294.30074 * 3 2 1 20 20 H 1.09003 * 109.47314 * 300.00474 * 1 2 3 21 21 H 1.09003 * 109.46813 * 60.00323 * 1 2 3 22 22 H 1.09003 * 109.47049 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47400 * 239.99704 * 2 1 3 24 24 H 1.09004 * 109.46701 * 119.99137 * 2 1 3 25 25 H 1.08994 * 109.49411 * 67.29396 * 4 3 2 26 26 H 1.08997 * 109.49227 * 307.21213 * 4 3 2 27 27 H 1.09000 * 109.62954 * 186.46215 * 5 4 3 28 28 H 1.09005 * 109.62953 * 65.88225 * 5 4 3 29 29 H 0.97008 * 120.00005 * 355.17779 * 9 7 6 30 30 H 0.97001 * 119.99508 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.63221 * 68.25349 * 18 6 5 32 32 H 1.08997 * 109.62784 * 188.83531 * 18 6 5 33 33 H 1.09003 * 109.49164 * 292.70238 * 19 3 2 34 34 H 1.09002 * 109.49586 * 52.78416 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4685 1.4311 0.2382 5 6 3.9082 2.8889 0.4109 6 7 3.4446 3.6579 -0.7540 7 6 4.2948 4.4377 -1.4509 8 8 3.8773 5.1362 -2.3542 9 7 5.6068 4.4474 -1.1428 10 6 6.4871 5.1637 -1.9134 11 1 6.1288 5.7203 -2.7668 12 6 7.8390 5.1741 -1.5956 13 7 8.6827 5.8603 -2.3345 14 14 8.4589 4.2121 -0.1193 15 1 8.8232 2.8361 -0.5425 16 1 9.6537 4.8887 0.4463 17 1 7.3925 4.1467 0.9121 18 6 2.0274 3.5581 -1.1345 19 6 1.6631 2.0694 -1.2500 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8932 -0.5137 0.8901 25 1 3.9910 0.9919 -0.6115 26 1 3.7066 0.8699 1.1418 27 1 4.9953 2.9385 0.4734 28 1 3.4673 3.2991 1.3195 29 1 5.9287 3.9478 -0.3760 30 1 9.6270 5.8672 -2.1128 31 1 1.4092 4.0314 -0.3717 32 1 1.8705 4.0503 -2.0943 33 1 2.2107 1.6213 -2.0791 34 1 0.5918 1.9711 -1.4257 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264374.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:50:41 Heat of formation + Delta-G solvation = -31.558820 kcal Electronic energy + Delta-G solvation = -16319.226915 eV Core-core repulsion = 13672.748871 eV Total energy + Delta-G solvation = -2646.478043 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28535 -39.24748 -36.21734 -35.86654 -33.75744 -32.16908 -31.50696 -27.94484 -26.44264 -24.60000 -23.19649 -21.94846 -20.98764 -20.14632 -18.56085 -17.28747 -16.53116 -16.34566 -16.31475 -15.96297 -15.58948 -15.14386 -15.02892 -14.66501 -14.16895 -14.03574 -13.44476 -13.00478 -12.84385 -12.80791 -12.47886 -12.32442 -12.26317 -12.07634 -11.88041 -11.62208 -11.58271 -10.94722 -10.31142 -9.70777 -9.25035 -8.37012 -5.97843 1.26242 1.34078 1.41165 1.92973 2.22692 2.23858 2.89179 3.18892 3.34967 3.88282 3.97145 4.01981 4.22600 4.26758 4.37554 4.50100 4.56457 4.65151 4.75010 4.79000 4.84936 5.03507 5.04503 5.16527 5.36007 5.41335 5.69462 5.80356 6.01391 6.08218 6.27547 6.77639 6.88360 7.47865 8.01064 8.81162 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.007178 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.213364 B = 3899.934522 C = 4401.698109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 N -0.539 5.539 4 C 0.046 3.954 5 C 0.110 3.890 6 N -0.638 5.638 7 C 0.668 3.332 8 O -0.658 6.658 9 N -0.612 5.612 10 C -0.314 4.314 11 H 0.056 0.944 12 C -0.016 4.016 13 N -0.941 5.941 14 Si 0.958 3.042 15 H -0.255 1.255 16 H -0.271 1.271 17 H -0.237 1.237 18 C 0.136 3.864 19 C 0.049 3.951 20 H 0.062 0.938 21 H 0.052 0.948 22 H 0.072 0.928 23 H 0.027 0.973 24 H 0.089 0.911 25 H 0.026 0.974 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.385 0.615 30 H 0.278 0.722 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.021 0.979 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 -15.492 11.305 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.083 4.083 5 C -0.013 4.013 6 N -0.378 5.378 7 C 0.370 3.630 8 O -0.543 6.543 9 N -0.259 5.259 10 C -0.443 4.443 11 H 0.074 0.926 12 C -0.214 4.214 13 N -0.582 5.582 14 Si 0.779 3.221 15 H -0.179 1.179 16 H -0.196 1.196 17 H -0.161 1.161 18 C 0.013 3.987 19 C -0.080 4.080 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.046 0.954 24 H 0.107 0.893 25 H 0.044 0.956 26 H 0.134 0.866 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.223 0.777 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.223 -14.703 11.003 22.629 hybrid contribution 1.261 -0.344 -0.479 1.392 sum -11.962 -15.047 10.525 21.915 Atomic orbital electron populations 1.21782 0.93716 1.02385 1.02365 1.22176 0.97042 0.87391 1.01235 1.62022 1.13210 1.16888 1.34272 1.22490 0.88030 0.95647 1.02158 1.21901 0.99221 0.91592 0.88552 1.47262 1.09545 1.48768 1.32196 1.15929 0.81594 0.82357 0.83113 1.90722 1.77569 1.48741 1.37254 1.41192 1.04690 1.49892 1.30162 1.18861 0.88676 1.27130 1.09639 0.92585 1.25935 0.94871 0.98688 1.01905 1.69817 1.04080 1.42964 1.41387 0.85467 0.79421 0.79069 0.78192 1.17934 1.19572 1.16088 1.21624 0.79470 0.96447 1.01173 1.22568 1.02196 0.92995 0.90223 0.91859 0.92880 0.90904 0.95422 0.89279 0.95591 0.86562 0.90815 0.89089 0.77676 0.91260 0.90094 0.91261 0.96107 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.84 71.98 0.71 -1.19 16 2 C 0.05 0.78 5.68 86.30 0.49 1.27 16 3 N -0.54 -11.33 4.63 -894.31 -4.14 -15.47 16 4 C 0.05 1.01 5.62 86.38 0.49 1.49 16 5 C 0.11 3.04 6.59 86.35 0.57 3.61 16 6 N -0.64 -23.66 3.00 -835.03 -2.51 -26.17 16 7 C 0.67 33.49 8.26 179.06 1.48 34.96 16 8 O -0.66 -39.38 15.41 -3.97 -0.06 -39.44 16 9 N -0.61 -31.17 5.01 -320.72 -1.61 -32.77 16 10 C -0.31 -19.20 10.16 84.01 0.85 -18.34 16 11 H 0.06 4.04 7.40 -2.91 -0.02 4.02 16 12 C -0.02 -0.94 5.50 84.90 0.47 -0.47 16 13 N -0.94 -58.18 13.96 21.66 0.30 -57.88 16 14 Si 0.96 40.09 27.74 68.60 1.90 41.99 16 15 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.24 -8.50 6.52 99.48 0.65 -7.85 16 18 C 0.14 4.24 6.61 86.50 0.57 4.81 16 19 C 0.05 1.19 5.48 86.54 0.47 1.66 16 20 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.05 0.73 6.40 -2.39 -0.02 0.71 16 22 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.03 0.47 8.12 -2.39 -0.02 0.45 16 24 H 0.09 1.17 7.97 -2.38 -0.02 1.15 16 25 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.12 1.83 7.99 -2.39 -0.02 1.81 16 27 H 0.07 2.07 5.63 -2.39 -0.01 2.06 16 28 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.39 16.60 3.26 -92.70 -0.30 16.30 16 30 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.07 2.51 7.09 -2.39 -0.02 2.49 16 33 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 2.11 6.16 -2.39 -0.01 2.10 16 Total: -1.00 -77.08 271.40 0.72 -76.36 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.73 Total: 25.57 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: 6.10 Total: 27.80 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -7.95 Total: -132.28 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.06 Total: -39.44 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.90 Total: 41.99 kcal Total: -77.08 0.72 -76.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264374.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.798 kcal (2) G-P(sol) polarization free energy of solvation -77.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds