Wall clock time and date at job start Mon Mar 30 2020 20:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99931 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47053 * 34.99936 * 12 11 10 14 14 C 1.52993 * 109.46970 * 275.00078 * 12 11 10 15 15 C 1.53002 * 109.47149 * 299.99661 * 14 12 11 16 16 C 1.52995 * 109.47347 * 300.00407 * 15 14 12 17 17 C 1.52993 * 109.47328 * 59.99703 * 16 15 14 18 18 C 1.52995 * 109.47029 * 154.99975 * 12 11 10 19 19 H 1.09001 * 109.47014 * 180.02562 * 18 12 11 20 20 C 1.53003 * 109.47358 * 299.99751 * 18 12 11 21 21 O 1.42896 * 109.47146 * 185.00154 * 20 18 12 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 1.00894 * 110.99798 * 56.04180 * 11 10 9 28 28 H 1.08995 * 109.47865 * 60.00100 * 14 12 11 29 29 H 1.09001 * 109.46953 * 179.97438 * 14 12 11 30 30 H 1.09001 * 109.46940 * 60.00302 * 15 14 12 31 31 H 1.09000 * 109.47050 * 180.02562 * 15 14 12 32 32 H 1.08997 * 109.46938 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.47014 * 299.99849 * 16 15 14 34 34 H 1.09001 * 109.46953 * 60.00109 * 17 16 15 35 35 H 1.09000 * 109.47606 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47082 * 305.00633 * 20 18 12 37 37 H 1.09000 * 109.47010 * 65.00004 * 20 18 12 38 38 H 0.96704 * 113.99535 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 2.4352 -6.0760 -0.0018 13 1 3.3181 -5.8288 0.5878 14 6 2.8537 -6.3924 -1.4389 15 6 1.6144 -6.7393 -2.2664 16 6 0.9194 -7.9586 -1.6574 17 6 0.5009 -7.6422 -0.2203 18 6 1.7402 -7.2953 0.6072 19 1 2.4263 -8.1423 0.6072 20 6 1.3216 -6.9789 2.0445 21 8 0.7780 -8.1526 2.6517 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 0.8745 -4.9841 -0.7827 28 1 3.3489 -5.5238 -1.8729 29 1 3.5401 -7.2392 -1.4394 30 1 0.9285 -5.8922 -2.2660 31 1 1.9127 -6.9652 -3.2902 32 1 0.0363 -8.2054 -2.2467 33 1 1.6054 -8.8057 -1.6579 34 1 -0.1851 -6.7951 -0.2198 35 1 0.0061 -8.5110 0.2138 36 1 2.1912 -6.6460 2.6112 37 1 0.5686 -6.1908 2.0384 38 1 0.4905 -8.0252 3.5661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231041534.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:51:20 Heat of formation + Delta-G solvation = -82.886719 kcal Electronic energy + Delta-G solvation = -16374.674954 eV Core-core repulsion = 13829.511510 eV Total energy + Delta-G solvation = -2545.163445 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.42677 -36.37599 -34.59808 -32.70416 -31.37179 -30.21137 -27.86541 -25.16115 -23.92985 -22.21297 -21.28563 -20.39399 -18.74807 -17.06286 -16.25763 -15.74774 -15.16796 -14.63648 -14.46622 -14.12571 -13.90206 -13.37941 -12.94935 -12.76176 -12.29021 -12.17844 -11.84883 -11.56909 -11.33720 -11.10689 -10.98299 -10.86537 -10.59193 -10.31569 -10.15599 -9.99239 -9.87677 -9.64462 -9.31613 -9.14866 -8.35174 -7.73601 -5.99806 -4.02380 3.33002 3.37451 3.39740 4.35276 4.43411 4.71064 4.89355 4.98944 5.03685 5.27147 5.36062 5.44733 5.57400 5.60913 5.64074 5.71705 5.78859 5.85179 6.03132 6.09929 6.15377 6.25198 6.27471 6.38231 6.40364 6.43793 6.57486 6.65031 6.99585 7.51993 7.74524 7.78029 7.84004 7.99352 8.09692 8.44176 9.04847 9.61347 11.11559 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033909 B = 0.005737 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.542220 B = 4879.029903 C = 5241.854530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.685 5.685 12 C 0.090 3.910 13 H 0.073 0.927 14 C -0.147 4.147 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.110 4.110 18 C -0.068 4.068 19 H 0.067 0.933 20 C 0.085 3.915 21 O -0.583 6.583 22 H 0.261 0.739 23 H 0.024 0.976 24 H 0.012 0.988 25 H 0.015 0.985 26 H 0.056 0.944 27 H 0.338 0.662 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -15.083 -0.164 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.021 4.021 13 H 0.091 0.909 14 C -0.186 4.186 15 C -0.159 4.159 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.087 4.087 19 H 0.086 0.914 20 C 0.008 3.992 21 O -0.388 6.388 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.675 -15.200 -0.074 15.434 hybrid contribution 0.765 1.324 -0.410 1.583 sum 3.440 -13.876 -0.484 14.305 Atomic orbital electron populations 1.69963 1.06027 1.26684 1.50601 1.25001 0.94834 0.99185 0.95309 0.86655 0.79571 0.83160 0.78578 1.21266 1.20241 1.20314 1.21148 0.92924 0.91080 1.50946 0.92868 1.19049 0.94012 0.90470 0.97584 1.22175 0.96985 0.88648 0.98486 1.60781 1.19262 1.01745 1.49904 1.21490 0.95050 0.91200 0.94348 0.90862 1.22151 0.97930 1.01465 0.97076 1.21538 0.97394 0.98448 0.98569 1.21538 0.99831 0.97601 0.96567 1.21486 0.97529 1.01770 0.93966 1.21054 0.97395 0.97025 0.93277 0.91426 1.22175 0.97533 0.86686 0.92856 1.86407 1.84083 1.37053 1.31223 0.92946 0.95767 0.96936 0.96680 0.92549 0.84175 0.91767 0.92015 0.91574 0.92273 0.92294 0.92491 0.91142 0.91870 0.94412 0.91676 0.77977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 10 C 0.07 1.35 5.42 -3.82 -0.02 1.33 16 11 N -0.68 -11.80 5.10 -106.73 -0.54 -12.34 16 12 C 0.09 1.29 2.30 -67.72 -0.16 1.14 16 13 H 0.07 1.08 7.80 -51.93 -0.41 0.68 16 14 C -0.15 -1.91 5.52 -26.73 -0.15 -2.06 16 15 C -0.12 -1.50 5.67 -26.73 -0.15 -1.65 16 16 C -0.12 -1.36 5.92 -26.74 -0.16 -1.52 16 17 C -0.11 -1.42 4.86 -26.73 -0.13 -1.55 16 18 C -0.07 -0.91 2.25 -90.62 -0.20 -1.12 16 19 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 20 C 0.08 1.16 6.19 37.16 0.23 1.39 16 21 O -0.58 -7.41 13.19 -35.23 -0.46 -7.87 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.67 8.14 -51.92 -0.42 0.25 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.01 0.31 7.43 -51.93 -0.39 -0.08 16 26 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 27 H 0.34 5.82 5.56 -39.29 -0.22 5.60 16 28 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.89 6.26 -51.93 -0.32 0.57 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.00 7.21 -51.93 -0.37 0.62 16 35 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 38 H 0.37 3.17 9.12 45.56 0.42 3.59 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -30.28 296.04 -7.96 -38.23 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.83 Total: 4.14 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.29 Total: -17.07 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.19 Total: -38.57 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.46 Total: -7.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.28 -7.96 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231041534.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.653 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds