Wall clock time and date at job start Mon Mar 30 2020 20:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99931 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47053 * 34.99936 * 12 11 10 14 14 C 1.52993 * 109.46970 * 275.00078 * 12 11 10 15 15 C 1.53002 * 109.47149 * 299.99661 * 14 12 11 16 16 C 1.52995 * 109.47347 * 300.00407 * 15 14 12 17 17 C 1.52993 * 109.47328 * 59.99703 * 16 15 14 18 18 C 1.52995 * 109.47029 * 154.99975 * 12 11 10 19 19 H 1.09001 * 109.47014 * 180.02562 * 18 12 11 20 20 C 1.53003 * 109.47358 * 299.99751 * 18 12 11 21 21 O 1.42896 * 109.47146 * 185.00154 * 20 18 12 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 1.00894 * 110.99798 * 56.04180 * 11 10 9 28 28 H 1.08995 * 109.47865 * 60.00100 * 14 12 11 29 29 H 1.09001 * 109.46953 * 179.97438 * 14 12 11 30 30 H 1.09001 * 109.46940 * 60.00302 * 15 14 12 31 31 H 1.09000 * 109.47050 * 180.02562 * 15 14 12 32 32 H 1.08997 * 109.46938 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.47014 * 299.99849 * 16 15 14 34 34 H 1.09001 * 109.46953 * 60.00109 * 17 16 15 35 35 H 1.09000 * 109.47606 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47082 * 305.00633 * 20 18 12 37 37 H 1.09000 * 109.47010 * 65.00004 * 20 18 12 38 38 H 0.96704 * 113.99535 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 2.4352 -6.0760 -0.0018 13 1 3.3181 -5.8288 0.5878 14 6 2.8537 -6.3924 -1.4389 15 6 1.6144 -6.7393 -2.2664 16 6 0.9194 -7.9586 -1.6574 17 6 0.5009 -7.6422 -0.2203 18 6 1.7402 -7.2953 0.6072 19 1 2.4263 -8.1423 0.6072 20 6 1.3216 -6.9789 2.0445 21 8 0.7780 -8.1526 2.6517 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 0.8745 -4.9841 -0.7827 28 1 3.3489 -5.5238 -1.8729 29 1 3.5401 -7.2392 -1.4394 30 1 0.9285 -5.8922 -2.2660 31 1 1.9127 -6.9652 -3.2902 32 1 0.0363 -8.2054 -2.2467 33 1 1.6054 -8.8057 -1.6579 34 1 -0.1851 -6.7951 -0.2198 35 1 0.0061 -8.5110 0.2138 36 1 2.1912 -6.6460 2.6112 37 1 0.5686 -6.1908 2.0384 38 1 0.4905 -8.0252 3.5661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231041534.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:51:19 Heat of formation + Delta-G solvation = -103.905553 kcal Electronic energy + Delta-G solvation = -16375.586399 eV Core-core repulsion = 13829.511510 eV Total energy + Delta-G solvation = -2546.074890 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56511 -37.45174 -36.22364 -34.59578 -32.46325 -31.72110 -29.45992 -26.43229 -25.70298 -23.29703 -22.74136 -21.87892 -19.90081 -18.45571 -18.06880 -17.03507 -16.46654 -16.30617 -15.78673 -15.38657 -15.13540 -14.68563 -14.44654 -14.23659 -13.78143 -13.37731 -13.15776 -12.95654 -12.82703 -12.79656 -12.40855 -12.37997 -12.11195 -11.82194 -11.51239 -11.32233 -11.22469 -11.08251 -10.91720 -10.68246 -10.55685 -9.15963 -8.20206 -6.31691 1.40044 1.43138 1.51120 2.40455 3.13179 3.35475 3.39611 3.84398 3.89263 4.02502 4.22217 4.37919 4.49185 4.52629 4.53845 4.59277 4.68244 4.70695 4.76563 4.81920 5.02112 5.08042 5.10380 5.13041 5.26221 5.28037 5.36540 5.45504 5.49533 5.59241 5.69921 5.80961 6.17090 6.33349 6.59147 6.85944 6.94743 7.37612 8.91696 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033909 B = 0.005737 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.542220 B = 4879.029903 C = 5241.854530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.034 3.966 10 C 0.086 3.914 11 N -0.686 5.686 12 C 0.090 3.910 13 H 0.072 0.928 14 C -0.143 4.143 15 C -0.121 4.121 16 C -0.112 4.112 17 C -0.107 4.107 18 C -0.065 4.065 19 H 0.080 0.920 20 C 0.089 3.911 21 O -0.590 6.590 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.012 1.012 25 H 0.017 0.983 26 H 0.056 0.944 27 H 0.338 0.662 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -15.817 -0.452 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.208 1.208 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.043 4.043 11 N -0.319 5.319 12 C -0.020 4.020 13 H 0.090 0.910 14 C -0.182 4.182 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.084 4.084 19 H 0.098 0.902 20 C 0.011 3.989 21 O -0.398 6.398 22 H 0.072 0.928 23 H 0.012 0.988 24 H 0.006 0.994 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.068 -15.958 -0.349 16.472 hybrid contribution 0.283 1.491 -0.282 1.544 sum 4.351 -14.467 -0.631 15.120 Atomic orbital electron populations 1.70104 1.07831 1.27837 1.51417 1.25972 0.95747 1.03346 0.94635 0.85489 0.78254 0.78039 0.79182 1.20820 1.19150 1.19174 1.21598 0.93509 0.92324 1.50935 0.92201 1.18895 0.94284 0.92348 0.94848 1.21768 0.95515 0.88534 0.98506 1.60689 1.19701 1.01332 1.50146 1.21558 0.94439 0.90327 0.95674 0.90976 1.22106 0.98536 1.01811 0.95749 1.21536 0.96754 0.98157 0.99439 1.21504 1.00479 0.97559 0.95406 1.21435 0.96973 1.00941 0.95071 1.21026 0.97676 0.96640 0.93038 0.90177 1.22049 0.96970 0.86479 0.93383 1.86362 1.84080 1.36490 1.32827 0.92762 0.98825 0.99350 0.96450 0.92555 0.84181 0.92928 0.89905 0.93382 0.90751 0.91348 0.91058 0.93008 0.91873 0.94150 0.93813 0.75902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.30 9.11 25.60 0.23 -31.07 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.81 5.23 29.85 0.16 1.96 16 10 C 0.09 3.59 5.42 86.30 0.47 4.05 16 11 N -0.69 -23.86 5.10 -491.57 -2.51 -26.36 16 12 C 0.09 2.49 2.30 44.91 0.10 2.59 16 13 H 0.07 2.03 7.80 -2.38 -0.02 2.01 16 14 C -0.14 -3.45 5.52 30.59 0.17 -3.29 16 15 C -0.12 -2.77 5.67 30.59 0.17 -2.60 16 16 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 17 C -0.11 -2.63 4.86 30.59 0.15 -2.48 16 18 C -0.06 -1.64 2.25 -10.79 -0.02 -1.66 16 19 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 20 C 0.09 2.35 6.19 71.98 0.45 2.80 16 21 O -0.59 -14.16 13.19 -148.98 -1.97 -16.13 16 22 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 23 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 24 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 25 H 0.02 0.71 7.43 -2.39 -0.02 0.70 16 26 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 27 H 0.34 11.88 5.56 -89.70 -0.50 11.38 16 28 H 0.05 1.40 7.45 -2.39 -0.02 1.38 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.28 6.26 -2.39 -0.01 1.26 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.47 7.21 -2.39 -0.02 1.45 16 35 H 0.06 1.56 7.82 -2.39 -0.02 1.54 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.04 1.34 7.76 -2.39 -0.02 1.32 16 38 H 0.39 6.11 9.12 -74.05 -0.68 5.44 16 Total: -1.00 -64.68 296.04 0.21 -64.47 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.14 Total: 19.92 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 2.52 Total: -31.32 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.22 Total: -83.35 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -1.97 Total: -16.13 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.68 0.21 -64.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231041534.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.435 kcal (2) G-P(sol) polarization free energy of solvation -64.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds