Wall clock time and date at job start Mon Mar 30 2020 20:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99459 * 2 1 4 4 H 1.48496 * 109.47148 * 269.99447 * 3 2 1 5 5 H 1.48501 * 109.47388 * 29.99792 * 3 2 1 6 6 H 1.48507 * 109.46995 * 149.99465 * 3 2 1 7 7 C 1.37874 * 120.00571 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47391 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.46994 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99853 * 179.97438 * 12 11 10 14 14 H 1.09009 * 110.05720 * 46.95479 * 13 12 11 15 15 C 1.54263 * 110.03199 * 285.54087 * 13 12 11 16 16 C 1.54891 * 104.19432 * 217.10476 * 15 13 12 17 17 C 1.54895 * 102.91381 * 37.85044 * 16 15 13 18 18 C 1.53868 * 110.03136 * 168.36886 * 13 12 11 19 19 H 1.09000 * 110.03564 * 238.56902 * 18 13 12 20 20 C 1.52995 * 110.03514 * 359.95293 * 18 13 12 21 21 O 1.42900 * 109.47390 * 181.69076 * 20 18 13 22 22 H 0.96995 * 120.00206 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47422 * 59.99117 * 9 7 2 24 24 H 1.09006 * 109.47108 * 299.99371 * 9 7 2 25 25 H 1.09006 * 109.47180 * 59.99432 * 10 9 7 26 26 H 1.09000 * 109.47165 * 300.00262 * 10 9 7 27 27 H 1.08993 * 109.47132 * 59.99694 * 11 10 9 28 28 H 1.09001 * 109.46767 * 299.99722 * 11 10 9 29 29 H 1.00895 * 110.99392 * 303.94793 * 12 11 10 30 30 H 1.08994 * 110.49093 * 98.42744 * 15 13 12 31 31 H 1.09005 * 110.59710 * 335.83758 * 15 13 12 32 32 H 1.09004 * 110.75351 * 156.25131 * 16 15 13 33 33 H 1.08995 * 110.75542 * 279.44207 * 16 15 13 34 34 H 1.08998 * 110.48909 * 80.82921 * 17 16 15 35 35 H 1.09002 * 110.48153 * 203.46983 * 17 16 15 36 36 H 1.09000 * 109.47228 * 301.69258 * 20 18 13 37 37 H 1.08996 * 109.47233 * 61.68972 * 20 18 13 38 38 H 0.96699 * 113.99909 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4353 -6.1036 0.0018 13 6 1.7351 -7.3949 0.0030 14 1 0.9422 -7.3910 -0.7451 15 6 1.1422 -7.6732 1.3998 16 6 1.3238 -9.1994 1.5922 17 6 2.7033 -9.4687 0.9413 18 6 2.7285 -8.5334 -0.2878 19 1 2.4178 -9.0820 -1.1769 20 6 4.1342 -7.9639 -0.4883 21 8 5.0391 -9.0262 -0.7963 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6243 -2.5567 0.8904 25 1 2.8722 -3.6042 0.8905 26 1 2.8722 -3.6042 -0.8894 27 1 0.8536 -5.0450 -0.8885 28 1 0.8542 -5.0445 0.8914 29 1 3.0700 -6.0368 -0.7796 30 1 0.0852 -7.4086 1.4252 31 1 1.6905 -7.1243 2.1654 32 1 1.3398 -9.4559 2.6515 33 1 0.5384 -9.7501 1.0747 34 1 3.5073 -9.2117 1.6310 35 1 2.7826 -10.5112 0.6331 36 1 4.1222 -7.2473 -1.3096 37 1 4.4576 -7.4645 0.4249 38 1 5.9514 -8.7377 -0.9362 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231305615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:51:28 Heat of formation + Delta-G solvation = -75.713839 kcal Electronic energy + Delta-G solvation = -15832.880229 eV Core-core repulsion = 13288.027824 eV Total energy + Delta-G solvation = -2544.852405 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.28896 -36.38746 -35.16010 -33.13776 -31.09277 -30.00255 -27.45634 -25.38550 -24.33850 -22.49683 -20.74233 -20.07515 -18.93009 -17.53785 -16.28014 -16.12480 -15.32242 -15.09611 -14.58723 -14.45211 -13.83491 -13.70344 -13.30850 -12.51793 -12.32208 -12.01236 -11.56123 -11.23493 -11.09754 -10.99527 -10.96806 -10.87762 -10.64037 -10.58602 -10.52927 -10.42213 -9.96296 -9.68262 -9.32108 -9.04116 -8.33522 -8.17277 -5.98572 -4.00742 3.32691 3.38830 3.42527 4.03847 4.37315 4.48829 4.53821 4.66197 4.99133 5.25707 5.31902 5.37227 5.44781 5.48200 5.50756 5.70321 5.74065 5.82891 5.85645 5.91369 5.97174 6.05129 6.15076 6.25353 6.33893 6.39585 6.72285 6.79660 7.14374 7.36188 7.55019 7.60925 7.69684 7.84804 8.01870 8.45106 9.06512 9.63254 11.12905 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.004502 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.525996 B = 6218.011424 C = 6686.137537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.057 3.943 12 N -0.688 5.688 13 C 0.087 3.913 14 H 0.043 0.957 15 C -0.115 4.115 16 C -0.127 4.127 17 C -0.106 4.106 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.085 3.915 21 O -0.580 6.580 22 H 0.260 0.740 23 H 0.013 0.987 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.023 0.977 28 H 0.068 0.932 29 H 0.336 0.664 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -17.715 0.287 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.071 4.071 12 N -0.321 5.321 13 C -0.023 4.023 14 H 0.061 0.939 15 C -0.153 4.153 16 C -0.165 4.165 17 C -0.144 4.144 18 C -0.108 4.108 19 H 0.092 0.908 20 C 0.007 3.993 21 O -0.385 6.385 22 H 0.070 0.930 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.742 -17.930 1.023 18.575 hybrid contribution 0.498 1.384 -1.078 1.823 sum 5.239 -16.547 -0.054 17.357 Atomic orbital electron populations 1.69964 1.06071 1.26553 1.51032 1.25027 0.94839 0.99251 0.95381 0.86599 0.79877 0.83498 0.78060 1.20714 1.21226 1.19857 1.21255 0.93035 0.91076 1.50346 0.92702 1.19066 0.94026 0.91385 0.97108 1.21621 0.99173 0.93079 1.00589 1.22157 0.94212 0.90768 0.99972 1.60903 1.20382 1.01252 1.49569 1.22133 0.94212 0.88830 0.97116 0.93946 1.22428 1.00427 0.95560 0.96878 1.22499 0.97206 0.96264 1.00496 1.22299 0.97241 0.98656 0.96156 1.21863 0.93620 0.96156 0.99189 0.90844 1.22215 0.89248 0.88253 0.99559 1.86433 1.22053 1.36281 1.93725 0.93040 0.96854 0.96565 0.92587 0.93804 0.95824 0.91349 0.84359 0.91947 0.90169 0.91564 0.91849 0.91380 0.91872 0.93916 0.91861 0.77649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.22 5.41 -26.73 -0.14 -2.36 16 11 C 0.06 1.00 5.51 -3.82 -0.02 0.97 16 12 N -0.69 -9.90 5.37 -105.54 -0.57 -10.46 16 13 C 0.09 1.11 3.21 -66.60 -0.21 0.89 16 14 H 0.04 0.56 8.04 -51.92 -0.42 0.14 16 15 C -0.11 -1.39 5.81 -25.07 -0.15 -1.54 16 16 C -0.13 -1.29 6.90 -24.73 -0.17 -1.46 16 17 C -0.11 -1.13 6.18 -24.96 -0.15 -1.29 16 18 C -0.09 -1.02 3.20 -89.40 -0.29 -1.31 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 20 C 0.08 0.94 5.17 37.16 0.19 1.13 16 21 O -0.58 -6.18 13.44 -35.23 -0.47 -6.65 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.02 0.42 8.12 -51.93 -0.42 -0.01 16 28 H 0.07 1.22 7.63 -51.93 -0.40 0.82 16 29 H 0.34 4.54 6.14 -39.29 -0.24 4.30 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.45 6.53 -51.93 -0.34 0.12 16 37 H 0.06 0.74 7.83 -51.93 -0.41 0.33 16 38 H 0.38 2.42 9.12 45.56 0.42 2.83 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -30.99 302.48 -8.24 -39.23 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.98 Total: 1.24 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -1.49 Total: -18.21 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.17 Total: -36.97 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.47 Total: -6.65 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.99 -8.24 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231305615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.487 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds