Wall clock time and date at job start Mon Mar 30 2020 20:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99459 * 2 1 4 4 H 1.48496 * 109.47148 * 269.99447 * 3 2 1 5 5 H 1.48501 * 109.47388 * 29.99792 * 3 2 1 6 6 H 1.48507 * 109.46995 * 149.99465 * 3 2 1 7 7 C 1.37874 * 120.00571 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47391 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.46994 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99853 * 179.97438 * 12 11 10 14 14 H 1.09009 * 110.05720 * 46.95479 * 13 12 11 15 15 C 1.54263 * 110.03199 * 285.54087 * 13 12 11 16 16 C 1.54891 * 104.19432 * 217.10476 * 15 13 12 17 17 C 1.54895 * 102.91381 * 37.85044 * 16 15 13 18 18 C 1.53868 * 110.03136 * 168.36886 * 13 12 11 19 19 H 1.09000 * 110.03564 * 238.56902 * 18 13 12 20 20 C 1.52995 * 110.03514 * 359.95293 * 18 13 12 21 21 O 1.42900 * 109.47390 * 181.69076 * 20 18 13 22 22 H 0.96995 * 120.00206 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47422 * 59.99117 * 9 7 2 24 24 H 1.09006 * 109.47108 * 299.99371 * 9 7 2 25 25 H 1.09006 * 109.47180 * 59.99432 * 10 9 7 26 26 H 1.09000 * 109.47165 * 300.00262 * 10 9 7 27 27 H 1.08993 * 109.47132 * 59.99694 * 11 10 9 28 28 H 1.09001 * 109.46767 * 299.99722 * 11 10 9 29 29 H 1.00895 * 110.99392 * 303.94793 * 12 11 10 30 30 H 1.08994 * 110.49093 * 98.42744 * 15 13 12 31 31 H 1.09005 * 110.59710 * 335.83758 * 15 13 12 32 32 H 1.09004 * 110.75351 * 156.25131 * 16 15 13 33 33 H 1.08995 * 110.75542 * 279.44207 * 16 15 13 34 34 H 1.08998 * 110.48909 * 80.82921 * 17 16 15 35 35 H 1.09002 * 110.48153 * 203.46983 * 17 16 15 36 36 H 1.09000 * 109.47228 * 301.69258 * 20 18 13 37 37 H 1.08996 * 109.47233 * 61.68972 * 20 18 13 38 38 H 0.96699 * 113.99909 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4353 -6.1036 0.0018 13 6 1.7351 -7.3949 0.0030 14 1 0.9422 -7.3910 -0.7451 15 6 1.1422 -7.6732 1.3998 16 6 1.3238 -9.1994 1.5922 17 6 2.7033 -9.4687 0.9413 18 6 2.7285 -8.5334 -0.2878 19 1 2.4178 -9.0820 -1.1769 20 6 4.1342 -7.9639 -0.4883 21 8 5.0391 -9.0262 -0.7963 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6243 -2.5567 0.8904 25 1 2.8722 -3.6042 0.8905 26 1 2.8722 -3.6042 -0.8894 27 1 0.8536 -5.0450 -0.8885 28 1 0.8542 -5.0445 0.8914 29 1 3.0700 -6.0368 -0.7796 30 1 0.0852 -7.4086 1.4252 31 1 1.6905 -7.1243 2.1654 32 1 1.3398 -9.4559 2.6515 33 1 0.5384 -9.7501 1.0747 34 1 3.5073 -9.2117 1.6310 35 1 2.7826 -10.5112 0.6331 36 1 4.1222 -7.2473 -1.3096 37 1 4.4576 -7.4645 0.4249 38 1 5.9514 -8.7377 -0.9362 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231305615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:51:27 Heat of formation + Delta-G solvation = -97.194785 kcal Electronic energy + Delta-G solvation = -15833.811713 eV Core-core repulsion = 13288.027824 eV Total energy + Delta-G solvation = -2545.783889 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26734 -37.35678 -36.56998 -35.00068 -32.78845 -30.99295 -28.91064 -26.94990 -25.26390 -24.22863 -22.08494 -21.41795 -19.94218 -18.60183 -18.25220 -17.18468 -16.56625 -16.40731 -16.16353 -15.53277 -15.19748 -14.89312 -14.37515 -14.19622 -13.88419 -13.35472 -13.25559 -12.80287 -12.54463 -12.50613 -12.10069 -11.94691 -11.93300 -11.86232 -11.70588 -11.48758 -11.39929 -11.35542 -11.04997 -10.80560 -10.55594 -9.37743 -8.20292 -6.31532 1.40152 1.41656 1.52963 2.40996 3.09956 3.12946 3.35535 3.63101 3.74915 4.11942 4.22966 4.33830 4.40167 4.46842 4.49578 4.60206 4.64836 4.71287 4.82102 4.88100 4.93219 4.97988 5.08128 5.11588 5.20848 5.24346 5.27682 5.31925 5.50608 5.52232 5.74605 5.85541 6.07822 6.26937 6.46186 6.85559 6.92933 7.37934 8.91733 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.004502 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.525996 B = 6218.011424 C = 6686.137537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.071 3.929 12 N -0.683 5.683 13 C 0.086 3.914 14 H 0.040 0.960 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.103 4.103 18 C -0.089 4.089 19 H 0.075 0.925 20 C 0.089 3.911 21 O -0.591 6.591 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.009 1.009 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.020 0.980 28 H 0.061 0.939 29 H 0.343 0.657 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -18.237 0.168 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.058 4.058 12 N -0.317 5.317 13 C -0.024 4.024 14 H 0.058 0.942 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.141 4.141 18 C -0.107 4.107 19 H 0.094 0.906 20 C 0.011 3.989 21 O -0.399 6.399 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 6.008 -18.471 0.899 19.444 hybrid contribution 0.108 1.507 -1.049 1.839 sum 6.116 -16.964 -0.150 18.033 Atomic orbital electron populations 1.70097 1.07852 1.27782 1.51763 1.25996 0.95768 1.03422 0.94693 0.85434 0.78669 0.78344 0.78522 1.19705 1.20723 1.18716 1.21700 0.93557 0.92387 1.50467 0.92185 1.18976 0.94454 0.93196 0.94689 1.21369 0.97987 0.92864 1.00728 1.21846 0.94085 0.90297 0.99548 1.60832 1.19766 1.01117 1.50022 1.22200 0.94506 0.88204 0.97459 0.94166 1.22428 1.00004 0.97028 0.96067 1.22473 0.97244 0.94653 1.01338 1.22277 0.97290 0.98825 0.95666 1.21849 0.93571 0.95660 0.99665 0.90616 1.22102 0.89142 0.88326 0.99345 1.86387 1.23413 1.36400 1.93678 0.92770 0.99200 0.99084 0.92800 0.93106 0.96171 0.91999 0.83582 0.92166 0.91526 0.90522 0.90819 0.91880 0.91130 0.93574 0.92575 0.75558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.32 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.81 5.41 30.59 0.17 -3.64 16 11 C 0.07 2.47 5.51 86.30 0.48 2.95 16 12 N -0.68 -19.03 5.37 -487.83 -2.62 -21.66 16 13 C 0.09 2.09 3.21 45.64 0.15 2.24 16 14 H 0.04 1.01 8.04 -2.38 -0.02 0.99 16 15 C -0.12 -2.73 5.81 31.67 0.18 -2.54 16 16 C -0.12 -2.21 6.90 31.89 0.22 -1.99 16 17 C -0.10 -2.01 6.18 31.74 0.20 -1.81 16 18 C -0.09 -1.88 3.20 -10.00 -0.03 -1.91 16 19 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 20 C 0.09 1.81 5.17 71.98 0.37 2.18 16 21 O -0.59 -11.41 13.44 -148.98 -2.00 -13.42 16 22 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 23 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 24 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 25 H 0.05 2.25 8.14 -2.38 -0.02 2.24 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 28 H 0.06 2.22 7.63 -2.39 -0.02 2.20 16 29 H 0.34 8.80 6.14 -89.70 -0.55 8.25 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.74 8.06 -2.38 -0.02 1.72 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.30 7.82 -2.39 -0.02 1.28 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 0.90 6.53 -2.39 -0.02 0.89 16 37 H 0.06 1.22 7.83 -2.39 -0.02 1.21 16 38 H 0.40 4.26 9.12 -74.06 -0.68 3.59 16 Total: -1.00 -65.58 302.48 0.06 -65.52 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.20 Total: 14.09 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 2.57 Total: -33.85 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.34 Total: -78.93 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -2.00 Total: -13.42 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.58 0.06 -65.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231305615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.672 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds