Wall clock time and date at job start Mon Mar 30 2020 20:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99697 * 2 1 4 4 C 1.53001 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.50559 * 305.08950 * 4 3 2 6 6 C 1.53092 * 109.50614 * 184.99634 * 4 3 2 7 7 N 1.47022 * 109.25708 * 183.21398 * 6 4 3 8 8 C 1.46896 * 111.00137 * 182.39181 * 7 6 4 9 9 H 1.09002 * 109.47220 * 300.00361 * 8 7 6 10 10 C 1.52997 * 109.46848 * 60.00291 * 8 7 6 11 11 C 1.50701 * 109.47239 * 180.02562 * 8 7 6 12 12 H 1.07999 * 119.99742 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00221 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99615 * 359.97438 * 13 11 8 15 15 Si 1.86792 * 119.99983 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.47285 * 89.99870 * 15 13 11 17 17 H 1.48503 * 109.47250 * 209.99665 * 15 13 11 18 18 H 1.48499 * 109.47267 * 329.99827 * 15 13 11 19 19 C 1.47018 * 110.74855 * 58.61961 * 7 6 4 20 20 C 1.53099 * 109.25730 * 301.38395 * 19 7 6 21 21 O 1.43010 * 109.26026 * 56.85030 * 20 19 7 22 22 H 1.09004 * 109.46699 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47376 * 300.00310 * 1 2 3 24 24 H 1.09000 * 109.47029 * 60.00225 * 1 2 3 25 25 H 1.00893 * 111.00143 * 236.04620 * 2 1 3 26 26 H 1.09002 * 109.47036 * 59.99706 * 3 2 1 27 27 H 1.09007 * 109.46976 * 299.99438 * 3 2 1 28 28 H 1.08996 * 109.50521 * 63.28962 * 6 4 3 29 29 H 1.08997 * 109.51033 * 303.14973 * 6 4 3 30 30 H 1.08998 * 109.47533 * 179.97438 * 10 8 7 31 31 H 1.08996 * 109.47853 * 300.00000 * 10 8 7 32 32 H 1.09002 * 109.47153 * 60.00028 * 10 8 7 33 33 H 0.96997 * 119.99545 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.50710 * 61.31951 * 19 7 6 35 35 H 1.08996 * 109.50389 * 181.45269 * 19 7 6 36 36 H 1.09008 * 109.50777 * 296.91082 * 20 19 7 37 37 H 1.09001 * 109.54309 * 176.80990 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5249 1.3308 0.0006 5 1 3.8726 0.7308 0.8416 6 6 4.0741 2.7543 0.1263 7 7 5.5418 2.7163 0.0489 8 6 6.1130 4.0585 0.2224 9 1 5.7385 4.7168 -0.5615 10 6 5.7081 4.6122 1.5900 11 6 7.6155 3.9800 0.1366 12 1 8.0978 3.0282 -0.0306 13 6 8.3745 5.1231 0.2714 14 7 7.7870 6.2822 0.4745 15 14 10.2368 5.0256 0.1657 16 1 10.6628 5.2077 -1.2452 17 1 10.8369 6.0931 1.0057 18 1 10.6915 3.6984 0.6527 19 6 5.9811 2.1167 -1.2195 20 6 5.4127 0.6996 -1.3317 21 8 3.9877 0.7529 -1.2230 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8306 -0.5261 -0.7813 26 1 1.6458 1.8948 0.8900 27 1 1.6459 1.8948 -0.8901 28 1 3.7711 3.1780 1.0837 29 1 3.6826 3.3684 -0.6846 30 1 6.1322 5.6079 1.7190 31 1 4.6213 4.6691 1.6518 32 1 6.0825 3.9538 2.3739 33 1 8.3210 7.0864 0.5690 34 1 5.6201 2.7206 -2.0519 35 1 7.0700 2.0751 -1.2444 36 1 5.8160 0.0810 -0.5298 37 1 5.6885 0.2713 -2.2954 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126336621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:50:53 Heat of formation + Delta-G solvation = -38.570995 kcal Electronic energy + Delta-G solvation = -16712.304193 eV Core-core repulsion = 14103.636511 eV Total energy + Delta-G solvation = -2608.667681 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.21284 -36.18508 -35.33736 -32.65318 -31.34138 -29.54792 -27.18576 -25.71420 -24.86410 -23.16493 -21.93842 -20.32878 -19.38919 -16.51998 -16.18789 -15.96372 -15.55051 -14.64154 -14.45759 -14.27067 -13.93149 -13.46090 -13.29510 -13.16672 -12.48324 -12.15313 -11.78001 -11.58689 -11.46724 -11.01092 -10.93827 -10.78834 -10.63643 -10.38135 -10.21777 -9.99490 -9.81949 -9.05945 -8.83483 -8.47413 -8.45489 -7.25660 -6.04137 -4.09145 3.28550 3.35433 3.39237 4.08106 4.19092 4.39405 4.87344 5.16763 5.27680 5.30990 5.38058 5.47857 5.54197 5.70418 5.74556 5.77200 5.81237 5.89350 6.05138 6.09099 6.39159 6.55405 6.62625 6.81345 6.94417 7.02605 7.08827 7.37142 7.46878 7.55130 7.67624 7.78828 8.13872 8.27412 8.53872 8.96580 9.56064 11.02751 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.051534 B = 0.006131 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.202831 B = 4565.784640 C = 4969.430925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.068 3.932 4 C 0.096 3.904 5 H 0.072 0.928 6 C 0.024 3.976 7 N -0.530 5.530 8 C 0.212 3.788 9 H -0.002 1.002 10 C -0.133 4.133 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.028 3.972 20 C 0.066 3.934 21 O -0.394 6.394 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.019 0.981 25 H 0.349 0.651 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.028 0.972 30 H 0.086 0.914 31 H 0.008 0.992 32 H 0.035 0.965 33 H 0.261 0.739 34 H 0.028 0.972 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 -8.936 -1.850 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.324 5.324 3 C -0.061 4.061 4 C 0.038 3.962 5 H 0.090 0.910 6 C -0.106 4.106 7 N -0.256 5.256 8 C 0.107 3.893 9 H 0.016 0.984 10 C -0.191 4.191 11 C -0.544 4.544 12 H 0.081 0.919 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.101 4.101 20 C -0.011 4.011 21 O -0.313 6.313 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.167 0.833 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.027 0.973 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.408 -9.159 -0.890 13.160 hybrid contribution 0.712 1.059 -1.438 1.922 sum -8.697 -8.100 -2.327 12.111 Atomic orbital electron populations 1.22184 0.88211 1.01598 1.00238 1.60388 1.07251 1.14249 1.50548 1.21986 0.93233 0.89864 1.01060 1.22173 0.92466 0.94025 0.87549 0.91033 1.22679 0.91125 0.95361 1.01392 1.62364 1.04840 1.26291 1.32094 1.19263 0.94379 0.82116 0.93588 0.98437 1.21834 0.95760 1.03322 0.98146 1.21124 0.90388 0.93879 1.48976 0.91879 1.24935 0.98765 0.95329 0.95172 1.69894 1.35259 0.98447 1.49592 0.86509 0.85280 0.77821 0.77882 1.20779 1.21224 1.19799 1.22616 1.02133 0.93999 0.91338 1.22699 0.80194 0.96994 1.01167 1.87803 1.22115 1.82294 1.39089 0.91609 0.91832 0.96226 0.83311 0.89752 0.94639 0.89966 0.95424 0.89582 0.97323 0.94589 0.92944 0.95416 0.88726 0.92780 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 60.07 0.64 0.92 16 2 N -0.69 -8.70 6.86 -121.12 -0.83 -9.53 16 3 C 0.07 0.93 5.39 -3.82 -0.02 0.91 16 4 C 0.10 1.56 3.04 -26.68 -0.08 1.48 16 5 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 6 C 0.02 0.45 4.62 -3.71 -0.02 0.43 16 7 N -0.53 -11.58 4.59 -227.72 -1.04 -12.63 16 8 C 0.21 5.40 2.06 -68.87 -0.14 5.26 16 9 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 10 C -0.13 -3.24 8.74 37.16 0.32 -2.92 16 11 C -0.51 -13.74 7.90 -34.44 -0.27 -14.01 16 12 H 0.06 1.70 6.42 -52.49 -0.34 1.36 16 13 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 14 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 15 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.03 0.55 5.36 -3.71 -0.02 0.53 16 20 C 0.07 1.09 7.01 37.21 0.26 1.35 16 21 O -0.39 -6.63 10.00 -35.23 -0.35 -6.98 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 25 H 0.35 4.36 8.38 -39.30 -0.33 4.03 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.52 6.19 -51.93 -0.32 1.20 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 31 H 0.01 0.17 6.35 -51.93 -0.33 -0.16 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.97 6.18 -51.93 -0.32 1.65 16 36 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -28.66 289.34 -7.84 -36.50 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.16 Total: 1.41 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 0.58 Total: -4.52 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -1.25 Total: -46.91 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.35 Total: -6.98 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.66 -7.84 -36.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126336621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.072 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds