Wall clock time and date at job start Mon Mar 30 2020 20:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47160 * 2 1 4 4 O 1.42904 * 109.47069 * 119.99845 * 2 1 3 5 5 C 1.53001 * 109.47177 * 239.99754 * 2 1 3 6 6 C 1.52999 * 109.47093 * 174.99793 * 5 2 1 7 7 N 1.46904 * 109.47088 * 179.97438 * 6 5 2 8 8 C 1.46898 * 110.99820 * 294.30507 * 7 6 5 9 9 C 1.53242 * 109.33811 * 172.74646 * 8 7 6 10 10 N 1.47077 * 108.52149 * 53.82884 * 9 8 7 11 11 C 1.36939 * 120.88326 * 128.79224 * 10 9 8 12 12 H 1.07998 * 120.00303 * 206.93557 * 11 10 9 13 13 C 1.38809 * 119.99782 * 26.93945 * 11 10 9 14 14 N 1.31618 * 120.00038 * 17.11750 * 13 11 10 15 15 Si 1.86804 * 119.99819 * 197.11827 * 13 11 10 16 16 H 1.48504 * 109.46985 * 94.12941 * 15 13 11 17 17 H 1.48497 * 109.46866 * 214.12457 * 15 13 11 18 18 H 1.48500 * 109.47262 * 334.12661 * 15 13 11 19 19 C 1.47085 * 118.23732 * 308.81972 * 10 9 8 20 20 C 1.46900 * 110.99714 * 170.00430 * 7 6 5 21 21 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47353 * 300.00329 * 1 2 3 23 23 H 1.08998 * 109.46855 * 60.00358 * 1 2 3 24 24 H 0.96698 * 113.99832 * 300.00269 * 4 2 1 25 25 H 1.08999 * 109.47059 * 54.99857 * 5 2 1 26 26 H 1.08998 * 109.47305 * 295.00345 * 5 2 1 27 27 H 1.09008 * 109.47061 * 60.00339 * 6 5 2 28 28 H 1.08998 * 109.47496 * 300.00435 * 6 5 2 29 29 H 1.09004 * 109.49616 * 292.70121 * 8 7 6 30 30 H 1.08997 * 109.49802 * 52.78531 * 8 7 6 31 31 H 1.09004 * 109.62995 * 294.11991 * 9 8 7 32 32 H 1.09000 * 109.63040 * 173.53419 * 9 8 7 33 33 H 0.97000 * 120.00329 * 180.02562 * 14 13 11 34 34 H 1.09008 * 109.62271 * 291.47251 * 19 10 9 35 35 H 1.09006 * 109.62787 * 170.89625 * 19 10 9 36 36 H 1.09002 * 109.49220 * 307.20731 * 20 7 6 37 37 H 1.08990 * 109.49434 * 67.29482 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5649 -0.6133 -1.3137 7 7 4.0546 -1.3064 -2.5128 8 6 3.8027 -2.7510 -2.4256 9 6 4.1598 -3.4099 -3.7622 10 7 5.5394 -3.0392 -4.1120 11 6 6.4596 -3.9950 -4.4513 12 1 7.5115 -3.8148 -4.2858 13 6 6.0402 -5.1953 -5.0081 14 7 4.8317 -5.2970 -5.5194 15 14 7.1912 -6.6665 -5.0317 16 1 6.9333 -7.5158 -3.8411 17 1 6.9562 -7.4590 -6.2653 18 1 8.5989 -6.1942 -5.0074 19 6 5.9048 -1.6147 -4.0870 20 6 5.4790 -1.0264 -2.7377 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.7210 -0.2701 1.9980 25 1 1.6054 -0.2618 -2.1369 26 1 1.7517 -1.7715 -1.2056 27 1 3.9995 -1.0728 -0.4259 28 1 3.8532 0.4369 -1.3573 29 1 4.4160 -3.1800 -1.6332 30 1 2.7494 -2.9239 -2.2048 31 1 3.4786 -3.0587 -4.5372 32 1 4.0845 -4.4932 -3.6680 33 1 4.5385 -6.1359 -5.9082 34 1 5.3913 -1.0909 -4.8933 35 1 6.9832 -1.5111 -4.2077 36 1 5.6414 0.0514 -2.7433 37 1 6.0689 -1.4794 -1.9410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133781925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:51:05 Heat of formation + Delta-G solvation = -29.201571 kcal Electronic energy + Delta-G solvation = -16512.796835 eV Core-core repulsion = 13904.535442 eV Total energy + Delta-G solvation = -2608.261393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.44728 -37.35011 -34.53492 -32.36383 -31.03669 -29.83463 -28.78274 -26.01020 -23.40687 -22.57469 -21.77877 -20.53179 -18.99804 -17.51556 -16.69941 -15.35853 -14.70000 -14.63058 -14.47713 -14.07992 -13.46532 -13.39473 -13.26527 -13.01152 -12.61531 -12.27180 -12.03461 -11.45712 -11.41932 -11.04223 -10.95095 -10.71142 -10.52687 -10.32455 -10.16584 -10.08141 -9.95228 -9.65242 -9.47510 -8.44868 -7.69051 -6.59750 -5.72512 -3.13654 3.41558 3.48242 3.49800 4.19794 4.40502 4.55290 4.90114 4.92471 5.16397 5.37752 5.44831 5.52441 5.62679 5.64594 5.68977 5.93614 5.98421 6.02489 6.06154 6.23747 6.29251 6.33597 6.41146 6.48232 6.64837 6.79273 7.00515 7.33388 7.57773 7.71439 7.74881 7.80477 7.90399 8.49629 9.27241 9.90865 10.50019 11.36320 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.045461 B = 0.005672 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.760677 B = 4935.489539 C = 5147.428250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.101 3.899 3 H 0.052 0.948 4 O -0.565 6.565 5 C -0.110 4.110 6 C 0.058 3.942 7 N -0.535 5.535 8 C 0.034 3.966 9 C 0.178 3.822 10 N -0.596 5.596 11 C -0.251 4.251 12 H 0.066 0.934 13 C 0.001 3.999 14 N -0.904 5.904 15 Si 0.902 3.098 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.149 3.851 20 C 0.045 3.955 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.372 0.628 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.253 0.747 34 H 0.025 0.975 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 10.630 10.523 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.042 3.958 3 H 0.070 0.930 4 O -0.370 6.370 5 C -0.147 4.147 6 C -0.070 4.070 7 N -0.260 5.260 8 C -0.095 4.095 9 C 0.052 3.948 10 N -0.319 5.319 11 C -0.381 4.381 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.732 3.268 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.204 1.204 19 C 0.022 3.978 20 C -0.085 4.085 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.218 0.782 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.696 10.264 9.553 15.539 hybrid contribution 0.621 -0.685 1.104 1.440 sum -6.075 9.580 10.656 15.564 Atomic orbital electron populations 1.22504 0.96667 1.02881 1.02169 1.21843 0.92487 0.95252 0.86263 0.92962 1.86610 1.77012 1.57628 1.15789 1.21643 0.96187 1.01732 0.95180 1.22011 0.94576 0.98399 0.92046 1.61980 1.17442 1.10564 1.36026 1.22920 0.99082 0.86632 1.00847 1.20858 0.84980 0.99128 0.89811 1.44123 1.08789 1.00167 1.78842 1.19226 0.89159 0.95277 1.34406 0.91672 1.25020 0.97018 0.99683 0.98019 1.70041 1.18676 1.25221 1.40901 0.86274 0.80389 0.83061 0.77063 1.21547 1.21771 1.20437 1.20981 0.97466 0.86389 0.92944 1.22594 0.87553 0.98753 0.99580 0.91740 0.92710 0.91479 0.78214 0.89945 0.90951 0.94866 0.91984 0.95853 0.91994 0.95645 0.89564 0.93686 0.95714 0.92716 0.92215 0.95574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.53 37.16 0.35 -1.29 16 2 C 0.10 1.09 3.58 -26.73 -0.10 1.00 16 3 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 4 O -0.57 -6.59 12.86 -35.23 -0.45 -7.05 16 5 C -0.11 -1.50 4.85 -26.73 -0.13 -1.63 16 6 C 0.06 0.91 4.86 -3.82 -0.02 0.90 16 7 N -0.54 -10.23 4.63 -234.32 -1.08 -11.32 16 8 C 0.03 0.72 5.46 -3.70 -0.02 0.70 16 9 C 0.18 4.52 5.42 -3.60 -0.02 4.50 16 10 N -0.60 -15.79 3.04 -172.01 -0.52 -16.31 16 11 C -0.25 -7.15 9.63 -15.06 -0.14 -7.30 16 12 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 13 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 14 N -0.90 -26.94 11.19 55.49 0.62 -26.32 16 15 Si 0.90 22.20 29.59 -169.99 -5.03 17.17 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.15 3.33 6.69 -3.60 -0.02 3.31 16 20 C 0.04 0.86 5.62 -3.70 -0.02 0.84 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.37 2.59 9.08 45.56 0.41 3.00 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.09 6.40 -51.93 -0.33 0.76 16 27 H 0.03 0.57 7.81 -51.92 -0.41 0.16 16 28 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.20 6.16 -51.93 -0.32 0.88 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 33 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.05 1.17 7.95 -51.93 -0.41 0.76 16 36 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 292.16 15.07 4.40 4.40 Total: -1.00 -31.74 292.16 -7.83 -39.57 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.56 Total: -1.12 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.21 Total: 0.97 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.99 Total: -53.94 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.45 Total: -7.05 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.74 -7.83 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133781925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.366 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds